RNA–Protein interactions for RNA: ENST00000339950.4

USP1-201, Transcript of ubiquitin specific peptidase 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP1, Length 3,996 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP1-201ENST00000339950 OR13C3Q8NGS6 347 aa10.88□□□□□ -0.67
USP1-201ENST00000339950 OR13C9Q8NGT0 318 aa10.88□□□□□ -0.67
USP1-201ENST00000339950 OR2T27Q8NH04 317 aa10.88□□□□□ -0.67
USP1-201ENST00000339950 RBPMSQ93062 196 aaKnown RBP10.88□□□□□ -0.67
USP1-201ENST00000339950 C10orf90Q96M02 699 aa10.88□□□□□ -0.67
USP1-201ENST00000339950 ZNF768Q9H5H4 540 aaKnown RBP10.88□□□□□ -0.67
USP1-201ENST00000339950 HRASLSQ9HDD0 168 aa10.88□□□□□ -0.67
USP1-201ENST00000339950 IFT46Q9NQC8 304 aa10.88□□□□□ -0.67
USP1-201ENST00000339950 ZMIZ1Q9ULJ6 1067 aa10.88□□□□□ -0.67
USP1-201ENST00000339950 PLRG1O43660 514 aaKnown RBP10.88□□□□□ -0.67
USP1-201ENST00000339950 ICOSLGO75144 302 aa10.88□□□□□ -0.67
USP1-201ENST00000339950 CFDP00746 253 aaPredicted RBP10.88□□□□□ -0.67
USP1-201ENST00000339950 CBFBQ13951 182 aa10.88□□□□□ -0.67
USP1-201ENST00000339950 OPCMLQ14982 345 aa10.88□□□□□ -0.67
USP1-201ENST00000339950 RSPO4Q2I0M5 234 aaPredicted RBP10.88□□□□□ -0.67
USP1-201ENST00000339950 PRICKLE4Q2TBC4 344 aa10.88□□□□□ -0.67
USP1-201ENST00000339950 KLHL24Q6TFL4 600 aa10.88□□□□□ -0.67
USP1-201ENST00000339950 SLC29A4Q7RTT9 530 aa10.88□□□□□ -0.67
USP1-201ENST00000339950 NUP54Q7Z3B4 507 aa10.88□□□□□ -0.67
USP1-201ENST00000339950 TMEM185AQ8NFB2 350 aa10.88□□□□□ -0.67
USP1-201ENST00000339950 YIPF5Q969M3 257 aa10.88□□□□□ -0.67
USP1-201ENST00000339950 KIAA1143Q96AT1 154 aaPredicted RBP10.88□□□□□ -0.67
USP1-201ENST00000339950 MARVELD1Q9BSK0 173 aa10.88□□□□□ -0.67
USP1-201ENST00000339950 CHMP1AQ9HD42 196 aaPredicted RBP10.88□□□□□ -0.67
USP1-201ENST00000339950 EPHA6Q9UF33 1036 aa10.88□□□□□ -0.67
USP1-201ENST00000339950 KLHDC2Q9Y2U9 406 aa10.88□□□□□ -0.67
USP1-201ENST00000339950 ZNF264O43296 627 aa10.87□□□□□ -0.67
USP1-201ENST00000339950 CYB5AP00167 134 aa10.87□□□□□ -0.67
USP1-201ENST00000339950 HCKP08631 526 aa10.87□□□□□ -0.67
USP1-201ENST00000339950 TRAPPC2P0DI81 140 aa10.87□□□□□ -0.67
USP1-201ENST00000339950 TRAPPC2BP0DI82 140 aa10.87□□□□□ -0.67
USP1-201ENST00000339950 CD1CP29017 333 aa10.87□□□□□ -0.67
USP1-201ENST00000339950 PRSS3P35030 304 aa10.87□□□□□ -0.67
USP1-201ENST00000339950 BLKP51451 505 aa10.87□□□□□ -0.67
USP1-201ENST00000339950 CAMK2DQ13557 499 aa10.87□□□□□ -0.67
USP1-201ENST00000339950 PHF19Q5T6S3 580 aa10.87□□□□□ -0.67
USP1-201ENST00000339950 UNQ6126/PRO20091Q6UXV3 157 aa10.87□□□□□ -0.67
USP1-201ENST00000339950 LANCL3Q6ZV70 420 aa10.87□□□□□ -0.67
USP1-201ENST00000339950 AIFM2Q9BRQ8 373 aa10.87□□□□□ -0.67
USP1-201ENST00000339950 MED18Q9BUE0 208 aa10.87□□□□□ -0.67
USP1-201ENST00000339950 PARP12Q9H0J9 701 aaKnown RBP10.87□□□□□ -0.67
USP1-201ENST00000339950 LMAN1LQ9HAT1 526 aa10.87□□□□□ -0.67
USP1-201ENST00000339950 SLCO1C1Q9NYB5 712 aa10.87□□□□□ -0.67
USP1-201ENST00000339950 ELF5Q9UKW6 265 aaPredicted RBP10.87□□□□□ -0.67
USP1-201ENST00000339950 COA3Q9Y2R0 106 aaPredicted RBP10.87□□□□□ -0.67
USP1-201ENST00000339950 ZNF337Q9Y3M9 751 aa10.87□□□□□ -0.67
USP1-201ENST00000339950 TANC1Q9C0D5 1861 aa10.87□□□□□ -0.67
USP1-201ENST00000339950 APC2O95996 2303 aa10.87□□□□□ -0.67
USP1-201ENST00000339950 PYCARD-AS1I3L0S3 204 aa10.87□□□□□ -0.67
USP1-201ENST00000339950 M0R036 132 aa10.87□□□□□ -0.67
USP1-201ENST00000339950 RAB3DO95716 219 aa10.87□□□□□ -0.67
USP1-201ENST00000339950 SCGB1D2O95969 90 aa10.87□□□□□ -0.67
USP1-201ENST00000339950 CD3DP04234 171 aa10.87□□□□□ -0.67
USP1-201ENST00000339950 DCNP07585 359 aaKnown RBP10.87□□□□□ -0.67
USP1-201ENST00000339950 SLC35E2P0CK97 266 aa10.87□□□□□ -0.67
USP1-201ENST00000339950 CCR9P51686 369 aa10.87□□□□□ -0.67
USP1-201ENST00000339950 S100A10P60903 97 aa10.87□□□□□ -0.67
USP1-201ENST00000339950 DUSP6Q16828 381 aa10.87□□□□□ -0.67
USP1-201ENST00000339950 NKAPLQ5M9Q1 402 aa10.87□□□□□ -0.67
USP1-201ENST00000339950 RPL22L1Q6P5R6 122 aaKnown RBP10.87□□□□□ -0.67
USP1-201ENST00000339950 TMEM205Q6UW68 189 aa10.87□□□□□ -0.67
USP1-201ENST00000339950 TCTE3Q8IZS6 198 aa10.87□□□□□ -0.67
USP1-201ENST00000339950 ZNF454Q8N9F8 522 aa10.87□□□□□ -0.67
USP1-201ENST00000339950 SMIM19Q96E16 107 aa10.87□□□□□ -0.67
USP1-201ENST00000339950 S100A13Q99584 98 aa10.87□□□□□ -0.67
USP1-201ENST00000339950 NT5DC2Q9H857 520 aa10.87□□□□□ -0.67
USP1-201ENST00000339950 FSCN3Q9NQT6 498 aa10.87□□□□□ -0.67
USP1-201ENST00000339950 TRAV8-7A0A075B6U6 113 aa10.87□□□□□ -0.67
USP1-201ENST00000339950 IGHV5-51A0A0C4DH38 117 aa10.87□□□□□ -0.67
USP1-201ENST00000339950 A0A1W2PQF6 199 aa10.87□□□□□ -0.67
USP1-201ENST00000339950 TCRBV16S1A1N1A0A5B0 115 aa10.87□□□□□ -0.67
USP1-201ENST00000339950 OR5K3A6NET4 321 aa10.87□□□□□ -0.67
USP1-201ENST00000339950 IFITM5A6NNB3 132 aa10.87□□□□□ -0.67
USP1-201ENST00000339950 AKR7A3O95154 331 aa10.87□□□□□ -0.67
USP1-201ENST00000339950 GABRG2P18507 467 aa10.87□□□□□ -0.67
USP1-201ENST00000339950 S1PR1P21453 382 aa10.87□□□□□ -0.67
USP1-201ENST00000339950 RAB38P57729 211 aa10.87□□□□□ -0.67
USP1-201ENST00000339950 CXADRP78310 365 aa10.87□□□□□ -0.67
USP1-201ENST00000339950 RPL13AP3Q6NVV1 102 aa10.87□□□□□ -0.67
USP1-201ENST00000339950 BEST3Q8N1M1 668 aa10.87□□□□□ -0.67
USP1-201ENST00000339950 OR4D10Q8NGI6 311 aa10.87□□□□□ -0.67
USP1-201ENST00000339950 GPR148Q8TDV2 347 aa10.87□□□□□ -0.67
USP1-201ENST00000339950 GSX2Q9BZM3 304 aa10.87□□□□□ -0.67
USP1-201ENST00000339950 PRR13Q9NZ81 148 aa10.87□□□□□ -0.67
USP1-201ENST00000339950 TXNL1O43396 289 aa10.86□□□□□ -0.67
USP1-201ENST00000339950 MPIG6BO95866 241 aa10.86□□□□□ -0.67
USP1-201ENST00000339950 CD14P08571 375 aa10.86□□□□□ -0.67
USP1-201ENST00000339950 H2BFMP0C1H6 154 aa10.86□□□□□ -0.67
USP1-201ENST00000339950 FOSL2P15408 326 aa10.86□□□□□ -0.67
USP1-201ENST00000339950 CCNOP22674 350 aa10.86□□□□□ -0.67
USP1-201ENST00000339950 CFL1P23528 166 aaKnown RBP10.86□□□□□ -0.67
USP1-201ENST00000339950 KIR2DL1P43626 348 aaPredicted RBP10.86□□□□□ -0.67
USP1-201ENST00000339950 EFNB2P52799 333 aa10.86□□□□□ -0.67
USP1-201ENST00000339950 TMEM255AQ5JRV8 349 aa10.86□□□□□ -0.67
USP1-201ENST00000339950 TMEM225Q6GV28 225 aa10.86□□□□□ -0.67
USP1-201ENST00000339950 LCN10Q6JVE6 187 aa10.86□□□□□ -0.67
USP1-201ENST00000339950 BTN2A1Q7KYR7 527 aa10.86□□□□□ -0.67
USP1-201ENST00000339950 LPAR4Q99677 370 aa10.86□□□□□ -0.67
USP1-201ENST00000339950 FOXQ1Q9C009 403 aa10.86□□□□□ -0.67
USP1-201ENST00000339950 MFFQ9GZY8 342 aa10.86□□□□□ -0.67
Retrieved 100 of 20,778 RNA–protein pairs in 33.6 ms