RNA–Protein interactions for RNA: ENST00000338585.6

MCF2-201, Transcript of MCF.2 cell line derived transforming sequence, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene MCF2, Length 2,826 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MCF2-201ENST00000338585 TMEM251Q8N6I4 163 aa3.7□□□□□ -1.82
MCF2-201ENST00000338585 ZNF248Q8NDW4 579 aa3.7□□□□□ -1.82
MCF2-201ENST00000338585 OR2T4Q8NH00 348 aa3.7□□□□□ -1.82
MCF2-201ENST00000338585 KCNE4Q8WWG9 221 aa3.7□□□□□ -1.82
MCF2-201ENST00000338585 HTRA1Q92743 480 aa3.7□□□□□ -1.82
MCF2-201ENST00000338585 C4orf36Q96KX1 117 aa3.7□□□□□ -1.82
MCF2-201ENST00000338585 KLHL15Q96M94 604 aa3.7□□□□□ -1.82
MCF2-201ENST00000338585 DCLRE1CQ96SD1 692 aaKnown RBP3.7□□□□□ -1.82
MCF2-201ENST00000338585 ARHGAP9Q9BRR9 750 aa3.7□□□□□ -1.82
MCF2-201ENST00000338585 JAM3Q9BX67 310 aa3.7□□□□□ -1.82
MCF2-201ENST00000338585 KRTAP4-8Q9BYQ9 185 aa3.7□□□□□ -1.82
MCF2-201ENST00000338585 VSX1Q9NZR4 365 aaPredicted RBP3.7□□□□□ -1.82
MCF2-201ENST00000338585 B9D1Q9UPM9 204 aa3.7□□□□□ -1.82
MCF2-201ENST00000338585 GRIP1Q9Y3R0 1128 aa3.7□□□□□ -1.82
MCF2-201ENST00000338585 KCNMB2Q9Y691 235 aa3.7□□□□□ -1.82
MCF2-201ENST00000338585 ZFHX4Q86UP3 3567 aa3.69□□□□□ -1.82
MCF2-201ENST00000338585 SLC35F4A4IF30 521 aa3.69□□□□□ -1.82
MCF2-201ENST00000338585 J3QLW9 94 aa3.69□□□□□ -1.82
MCF2-201ENST00000338585 M0R3G1 203 aa3.69□□□□□ -1.82
MCF2-201ENST00000338585 DVL2O14641 736 aa3.69□□□□□ -1.82
MCF2-201ENST00000338585 SMAD9O15198 467 aaKnown RBP3.69□□□□□ -1.82
MCF2-201ENST00000338585 CXCL13O43927 109 aa3.69□□□□□ -1.82
MCF2-201ENST00000338585 WISP2O76076 250 aa3.69□□□□□ -1.82
MCF2-201ENST00000338585 GLSO94925 669 aaPredicted RBP3.69□□□□□ -1.82
MCF2-201ENST00000338585 OR2T7P0C7T2 308 aa3.69□□□□□ -1.82
MCF2-201ENST00000338585 CPEP16870 476 aa3.69□□□□□ -1.82
MCF2-201ENST00000338585 ZNF19P17023 458 aa3.69□□□□□ -1.82
MCF2-201ENST00000338585 POU3F2P20265 443 aaPredicted RBP3.69□□□□□ -1.82
MCF2-201ENST00000338585 PEX19P40855 299 aa3.69□□□□□ -1.82
MCF2-201ENST00000338585 EIF1AXP47813 144 aaKnown RBP3.69□□□□□ -1.82
MCF2-201ENST00000338585 TNFSF10P50591 281 aa3.69□□□□□ -1.82
MCF2-201ENST00000338585 DAP3P51398 398 aaKnown RBP3.69□□□□□ -1.82
MCF2-201ENST00000338585 SLC35A1P78382 337 aa3.69□□□□□ -1.82
MCF2-201ENST00000338585 PLGLB1Q02325 96 aa3.69□□□□□ -1.82
MCF2-201ENST00000338585 SRYQ05066 204 aa3.69□□□□□ -1.82
MCF2-201ENST00000338585 POU4F2Q12837 409 aa3.69□□□□□ -1.82
MCF2-201ENST00000338585 CAMK2DQ13557 499 aa3.69□□□□□ -1.82
MCF2-201ENST00000338585 INSL4Q14641 139 aa3.69□□□□□ -1.82
MCF2-201ENST00000338585 ZNF766Q5HY98 468 aa3.69□□□□□ -1.82
MCF2-201ENST00000338585 HBMQ6B0K9 141 aa3.69□□□□□ -1.82
MCF2-201ENST00000338585 VASNQ6EMK4 673 aa3.69□□□□□ -1.82
MCF2-201ENST00000338585 TRILQ7L0X0 811 aa3.69□□□□□ -1.82
MCF2-201ENST00000338585 POMGNT2Q8NAT1 580 aa3.69□□□□□ -1.82
MCF2-201ENST00000338585 ADPRHL1Q8NDY3 354 aa3.69□□□□□ -1.82
MCF2-201ENST00000338585 OR2T27Q8NH04 317 aa3.69□□□□□ -1.82
MCF2-201ENST00000338585 OR52N1Q8NH53 320 aa3.69□□□□□ -1.82
MCF2-201ENST00000338585 ROBO4Q8WZ75 1007 aa3.69□□□□□ -1.82
MCF2-201ENST00000338585 HAS2Q92819 552 aa3.69□□□□□ -1.82
MCF2-201ENST00000338585 SCMH1Q96GD3 660 aa3.69□□□□□ -1.82
MCF2-201ENST00000338585 ZNF845Q96IR2 970 aaPredicted RBP3.69□□□□□ -1.82
MCF2-201ENST00000338585 ADGRG7Q96K78 797 aa3.69□□□□□ -1.82
MCF2-201ENST00000338585 ZNF385AQ96PM9 386 aaKnown RBP3.69□□□□□ -1.82
MCF2-201ENST00000338585 KCNK17Q96T54 332 aa3.69□□□□□ -1.82
MCF2-201ENST00000338585 AMELYQ99218 206 aa3.69□□□□□ -1.82
MCF2-201ENST00000338585 TM9SF2Q99805 663 aa3.69□□□□□ -1.82
MCF2-201ENST00000338585 EXOSC4Q9NPD3 245 aaKnown RBP3.69□□□□□ -1.82
MCF2-201ENST00000338585 FANCFQ9NPI8 374 aa3.69□□□□□ -1.82
MCF2-201ENST00000338585 MRPL22Q9NWU5 206 aaKnown RBP3.69□□□□□ -1.82
MCF2-201ENST00000338585 NDUFB11Q9NX14 153 aa3.69□□□□□ -1.82
MCF2-201ENST00000338585 B4GALT7Q9UBV7 327 aa3.69□□□□□ -1.82
MCF2-201ENST00000338585 TRAPPC4Q9Y296 219 aa3.69□□□□□ -1.82
MCF2-201ENST00000338585 COA3Q9Y2R0 106 aaPredicted RBP3.69□□□□□ -1.82
MCF2-201ENST00000338585 KLF13Q9Y2Y9 288 aaPredicted RBP3.69□□□□□ -1.82
MCF2-201ENST00000338585 CAB39Q9Y376 341 aaPredicted RBP3.69□□□□□ -1.82
MCF2-201ENST00000338585 LIPGQ9Y5X9 500 aa3.69□□□□□ -1.82
MCF2-201ENST00000338585 DNAJC13O75165 2243 aa3.69□□□□□ -1.82
MCF2-201ENST00000338585 TNRC6AQ8NDV7 1962 aaKnown RBP3.69□□□□□ -1.82
MCF2-201ENST00000338585 FRYQ5TBA9 3013 aa3.69□□□□□ -1.82
MCF2-201ENST00000338585 CACNA1CQ13936 2221 aa3.69□□□□□ -1.82
MCF2-201ENST00000338585 A0A087WV48 116 aa3.69□□□□□ -1.82
MCF2-201ENST00000338585 NPIPB13A6NJU9 1138 aa3.69□□□□□ -1.82
MCF2-201ENST00000338585 NPIPB4C9JG80 1138 aa3.69□□□□□ -1.82
MCF2-201ENST00000338585 WNT11O96014 354 aa3.69□□□□□ -1.82
MCF2-201ENST00000338585 HLA-DQA2P01906 255 aa3.69□□□□□ -1.82
MCF2-201ENST00000338585 HPNP05981 417 aa3.69□□□□□ -1.82
MCF2-201ENST00000338585 CD46P15529 392 aa3.69□□□□□ -1.82
MCF2-201ENST00000338585 ZNF43P17038 809 aa3.69□□□□□ -1.82
MCF2-201ENST00000338585 CELP19835 753 aa3.69□□□□□ -1.82
MCF2-201ENST00000338585 FKBP2P26885 142 aaKnown RBP3.69□□□□□ -1.82
MCF2-201ENST00000338585 PSMB10P40306 273 aa3.69□□□□□ -1.82
MCF2-201ENST00000338585 CRYBB2P43320 205 aa3.69□□□□□ -1.82
MCF2-201ENST00000338585 CARD18P57730 90 aa3.69□□□□□ -1.82
MCF2-201ENST00000338585 PPIAP62937 165 aaKnown RBP3.69□□□□□ -1.82
MCF2-201ENST00000338585 ACTC1P68032 377 aa3.69□□□□□ -1.82
MCF2-201ENST00000338585 ACTA1P68133 377 aa3.69□□□□□ -1.82
MCF2-201ENST00000338585 LSAMPQ13449 338 aa3.69□□□□□ -1.82
MCF2-201ENST00000338585 TPBGQ13641 420 aa3.69□□□□□ -1.82
MCF2-201ENST00000338585 C3AR1Q16581 482 aa3.69□□□□□ -1.82
MCF2-201ENST00000338585 ZNF239Q16600 458 aaKnown RBP3.69□□□□□ -1.82
MCF2-201ENST00000338585 TMPRSS11AQ6ZMR5 421 aa3.69□□□□□ -1.82
MCF2-201ENST00000338585 LRRC69Q6ZNQ3 347 aa3.69□□□□□ -1.82
MCF2-201ENST00000338585 SLC16A9Q7RTY1 509 aa3.69□□□□□ -1.82
MCF2-201ENST00000338585 DPY19L4Q7Z388 723 aa3.69□□□□□ -1.82
MCF2-201ENST00000338585 ZFP62Q8NB50 900 aaPredicted RBP3.69□□□□□ -1.82
MCF2-201ENST00000338585 OR6N2Q8NGY6 317 aa3.69□□□□□ -1.82
MCF2-201ENST00000338585 OR10D3Q8NH80 312 aa3.69□□□□□ -1.82
MCF2-201ENST00000338585 NSMAFQ92636 917 aa3.69□□□□□ -1.82
MCF2-201ENST00000338585 PELI1Q96FA3 418 aa3.69□□□□□ -1.82
MCF2-201ENST00000338585 OXGR1Q96P68 337 aa3.69□□□□□ -1.82
MCF2-201ENST00000338585 MRPL13Q9BYD1 178 aaKnown RBP3.69□□□□□ -1.82
Retrieved 100 of 20,778 RNA–protein pairs in 39.8 ms