RNA–Protein interactions for RNA: ENST00000324288.12

CIITA-201, Transcript of class II major histocompatibility complex transactivator, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene CIITA, Length 11,952 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CIITA-201ENST00000324288 MAN2B1O00754 1011 aa7.32□□□□□ -1.24
CIITA-201ENST00000324288 NFYBP25208 207 aa7.32□□□□□ -1.24
CIITA-201ENST00000324288 LRRC56Q8IYG6 542 aaPredicted RBP7.32□□□□□ -1.24
CIITA-201ENST00000324288 OR51S1Q8NGJ8 323 aa7.32□□□□□ -1.24
CIITA-201ENST00000324288 PRKRAO75569 313 aaKnown RBP7.32□□□□□ -1.24
CIITA-201ENST00000324288 ACSM1Q08AH1 577 aa7.32□□□□□ -1.24
CIITA-201ENST00000324288 TAF9Q16594 264 aa7.32□□□□□ -1.24
CIITA-201ENST00000324288 Q1RN00 199 aa7.32□□□□□ -1.24
CIITA-201ENST00000324288 CTU2Q2VPK5 515 aaKnown RBP7.32□□□□□ -1.24
CIITA-201ENST00000324288 USP51Q70EK9 711 aa7.32□□□□□ -1.24
CIITA-201ENST00000324288 ADAMTS14Q8WXS8 1223 aa7.32□□□□□ -1.24
CIITA-201ENST00000324288 OR8B4Q96RC9 309 aa7.32□□□□□ -1.24
CIITA-201ENST00000324288 ZIC5Q96T25 663 aa7.32□□□□□ -1.24
CIITA-201ENST00000324288 BANF2Q9H503 90 aa7.32□□□□□ -1.24
CIITA-201ENST00000324288 IL26Q9NPH9 171 aa7.32□□□□□ -1.24
CIITA-201ENST00000324288 SLC6A14Q9UN76 642 aa7.32□□□□□ -1.24
CIITA-201ENST00000324288 ZNF337Q9Y3M9 751 aa7.32□□□□□ -1.24
CIITA-201ENST00000324288 TMEM184BQ9Y519 407 aaPredicted RBP7.32□□□□□ -1.24
CIITA-201ENST00000324288 G3V3Q6 166 aa7.32□□□□□ -1.24
CIITA-201ENST00000324288 HTRA3P83110 453 aa7.32□□□□□ -1.24
CIITA-201ENST00000324288 ACVR1CQ8NER5 493 aa7.32□□□□□ -1.24
CIITA-201ENST00000324288 OR5D14Q8NGL3 314 aa7.32□□□□□ -1.24
CIITA-201ENST00000324288 GPR119Q8TDV5 335 aa7.32□□□□□ -1.24
CIITA-201ENST00000324288 BPIFA2Q96DR5 249 aa7.32□□□□□ -1.24
CIITA-201ENST00000324288 C10orf90Q96M02 699 aa7.32□□□□□ -1.24
CIITA-201ENST00000324288 SPHK1Q9NYA1 384 aa7.32□□□□□ -1.24
CIITA-201ENST00000324288 DOPEY1Q5JWR5 2465 aa7.32□□□□□ -1.24
CIITA-201ENST00000324288 SLX4Q8IY92 1834 aa7.32□□□□□ -1.24
CIITA-201ENST00000324288 A0A1B0GTW7 788 aa7.32□□□□□ -1.24
CIITA-201ENST00000324288 H7BYZ3 331 aa7.32□□□□□ -1.24
CIITA-201ENST00000324288 ALPLP05186 524 aa7.32□□□□□ -1.24
CIITA-201ENST00000324288 CNR1P21554 472 aa7.32□□□□□ -1.24
CIITA-201ENST00000324288 HSF1Q00613 529 aa7.32□□□□□ -1.24
CIITA-201ENST00000324288 MISPQ8IVT2 679 aa7.32□□□□□ -1.24
CIITA-201ENST00000324288 ACOT4Q8N9L9 421 aa7.32□□□□□ -1.24
CIITA-201ENST00000324288 DECR2Q9NUI1 292 aa7.32□□□□□ -1.24
CIITA-201ENST00000324288 SLC2A8Q9NY64 477 aa7.32□□□□□ -1.24
CIITA-201ENST00000324288 VASPP50552 380 aaPredicted RBP7.32□□□□□ -1.24
CIITA-201ENST00000324288 SLC35A2P78381 396 aa7.32□□□□□ -1.24
CIITA-201ENST00000324288 OR8G2PQ6IF36 304 aa7.32□□□□□ -1.24
CIITA-201ENST00000324288 ZNF813Q6ZN06 617 aa7.32□□□□□ -1.24
CIITA-201ENST00000324288 SCCPDHQ8NBX0 429 aa7.32□□□□□ -1.24
CIITA-201ENST00000324288 OR6T1Q8NGN1 323 aa7.32□□□□□ -1.24
CIITA-201ENST00000324288 RPUSD4Q96CM3 377 aaKnown RBP7.32□□□□□ -1.24
CIITA-201ENST00000324288 ALG12Q9BV10 488 aa7.32□□□□□ -1.24
CIITA-201ENST00000324288 C1orf123Q9NWV4 160 aa7.32□□□□□ -1.24
CIITA-201ENST00000324288 FLVCR2Q9UPI3 526 aa7.32□□□□□ -1.24
CIITA-201ENST00000324288 MROH6A6NGR9 719 aa7.32□□□□□ -1.24
CIITA-201ENST00000324288 RFPL4AA6NLU0 287 aa7.32□□□□□ -1.24
CIITA-201ENST00000324288 RFPL4AL1F8VTS6 287 aa7.32□□□□□ -1.24
CIITA-201ENST00000324288 ACP2P11117 423 aa7.32□□□□□ -1.24
CIITA-201ENST00000324288 HNRNPA3P51991 378 aaKnown RBP7.32□□□□□ -1.24
CIITA-201ENST00000324288 HCCSP53701 268 aa7.32□□□□□ -1.24
CIITA-201ENST00000324288 RUNX3Q13761 415 aa7.32□□□□□ -1.24
CIITA-201ENST00000324288 RETREG3Q86VR2 466 aa7.32□□□□□ -1.24
CIITA-201ENST00000324288 CD200R1Q8TD46 325 aa7.32□□□□□ -1.24
CIITA-201ENST00000324288 ZNF384Q8TF68 577 aa7.32□□□□□ -1.24
CIITA-201ENST00000324288 FOXJ1Q92949 421 aa7.32□□□□□ -1.24
CIITA-201ENST00000324288 CBLCQ9ULV8 474 aa7.32□□□□□ -1.24
CIITA-201ENST00000324288 PRPH2P23942 346 aa7.31□□□□□ -1.24
CIITA-201ENST00000324288 PCSK6P29122 969 aa7.31□□□□□ -1.24
CIITA-201ENST00000324288 HOXA11P31270 313 aaPredicted RBP7.31□□□□□ -1.24
CIITA-201ENST00000324288 C1orf220Q5T0J3 134 aa7.31□□□□□ -1.24
CIITA-201ENST00000324288 LINC00696Q6ZRV3 163 aa7.31□□□□□ -1.24
CIITA-201ENST00000324288 PIANPQ8IYJ0 282 aa7.31□□□□□ -1.24
CIITA-201ENST00000324288 UMODL1-AS1Q8N2C9 162 aa7.31□□□□□ -1.24
CIITA-201ENST00000324288 NMNAT3Q96T66 252 aa7.31□□□□□ -1.24
CIITA-201ENST00000324288 LOC102725191A0A1B0GVB3 256 aa7.31□□□□□ -1.24
CIITA-201ENST00000324288 F2P00734 622 aa7.31□□□□□ -1.24
CIITA-201ENST00000324288 IDUAP35475 653 aa7.31□□□□□ -1.24
CIITA-201ENST00000324288 ZNF252P-AS1Q0IIN9 211 aa7.31□□□□□ -1.24
CIITA-201ENST00000324288 FAM74A1Q5RGS3 127 aa7.31□□□□□ -1.24
CIITA-201ENST00000324288 FRMPD2BQ6IN97 320 aa7.31□□□□□ -1.24
CIITA-201ENST00000324288 RPUSD3Q6P087 351 aaKnown RBP7.31□□□□□ -1.24
CIITA-201ENST00000324288 EID2Q8N6I1 236 aa7.31□□□□□ -1.24
CIITA-201ENST00000324288 CDRT4Q8N9R6 151 aa7.31□□□□□ -1.24
CIITA-201ENST00000324288 CABLES2Q9BTV7 478 aa7.31□□□□□ -1.24
CIITA-201ENST00000324288 MED19A0JLT2 244 aaPredicted RBP7.31□□□□□ -1.24
CIITA-201ENST00000324288 PDGFBP01127 241 aaPredicted RBP7.31□□□□□ -1.24
CIITA-201ENST00000324288 CD68P34810 354 aaPredicted RBP7.31□□□□□ -1.24
CIITA-201ENST00000324288 CNN3Q15417 329 aaKnown RBP7.31□□□□□ -1.24
CIITA-201ENST00000324288 TBCEQ15813 527 aaPredicted RBP7.31□□□□□ -1.24
CIITA-201ENST00000324288 FOXB2Q5VYV0 432 aa7.31□□□□□ -1.24
CIITA-201ENST00000324288 PM20D1Q6GTS8 502 aa7.31□□□□□ -1.24
CIITA-201ENST00000324288 SCARB1Q8WTV0 552 aa7.31□□□□□ -1.24
CIITA-201ENST00000324288 LMAN1LQ9HAT1 526 aa7.31□□□□□ -1.24
CIITA-201ENST00000324288 ANTXRLA6NF34 631 aa7.31□□□□□ -1.24
CIITA-201ENST00000324288 CLDN24A6NM45 220 aa7.31□□□□□ -1.24
CIITA-201ENST00000324288 H3BNC9 293 aa7.31□□□□□ -1.24
CIITA-201ENST00000324288 HLA-HP01893 362 aa7.31□□□□□ -1.24
CIITA-201ENST00000324288 GSTP1P09211 210 aaKnown RBP7.31□□□□□ -1.24
CIITA-201ENST00000324288 RPL13AP40429 203 aaKnown RBP7.31□□□□□ -1.24
CIITA-201ENST00000324288 SFXN4Q6P4A7 337 aa7.31□□□□□ -1.24
CIITA-201ENST00000324288 UNC5DQ6UXZ4 953 aa7.31□□□□□ -1.24
CIITA-201ENST00000324288 COMMD1Q8N668 190 aa7.31□□□□□ -1.24
CIITA-201ENST00000324288 AKR1E2Q96JD6 320 aa7.31□□□□□ -1.24
CIITA-201ENST00000324288 AKIRIN1Q9H9L7 192 aaPredicted RBP7.31□□□□□ -1.24
CIITA-201ENST00000324288 TAS2R5Q9NYW4 299 aa7.31□□□□□ -1.24
CIITA-201ENST00000324288 GOLT1BQ9Y3E0 138 aa7.31□□□□□ -1.24
CIITA-201ENST00000324288 SORL1Q92673 2214 aa7.31□□□□□ -1.24
Retrieved 100 of 20,778 RNA–protein pairs in 21.7 ms