RNA–Protein interactions for RNA: ENST00000318006.9

VPS39-201, Transcript of VPS39, HOPS complex subunit, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS39, Length 4,844 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-201ENST00000318006 ADAM19Q9H013 955 aa10.61□□□□□ -0.71
VPS39-201ENST00000318006 ZNF286AQ9HBT8 521 aa10.61□□□□□ -0.71
VPS39-201ENST00000318006 SPACA1Q9HBV2 294 aa10.61□□□□□ -0.71
VPS39-201ENST00000318006 CNTRLQ7Z7A1 2325 aa10.61□□□□□ -0.71
VPS39-201ENST00000318006 KNL1Q8NG31 2342 aa10.61□□□□□ -0.71
VPS39-201ENST00000318006 HOXC8P31273 242 aa10.6□□□□□ -0.71
VPS39-201ENST00000318006 SRPXP78539 464 aa10.6□□□□□ -0.71
VPS39-201ENST00000318006 CNN3Q15417 329 aaKnown RBP10.6□□□□□ -0.71
VPS39-201ENST00000318006 CCSMST1Q4G0I0 132 aa10.6□□□□□ -0.71
VPS39-201ENST00000318006 XAF1Q6GPH4 301 aa10.6□□□□□ -0.71
VPS39-201ENST00000318006 OPN5Q6U736 354 aa10.6□□□□□ -0.71
VPS39-201ENST00000318006 BPHLQ86WA6 291 aaPredicted RBP10.6□□□□□ -0.71
VPS39-201ENST00000318006 OR2A14Q96R47 310 aa10.6□□□□□ -0.71
VPS39-201ENST00000318006 CMSS1Q9BQ75 279 aaKnown RBP10.6□□□□□ -0.71
VPS39-201ENST00000318006 SELENOIQ9C0D9 397 aa10.6□□□□□ -0.71
VPS39-201ENST00000318006 FN3KRPQ9HA64 309 aa10.6□□□□□ -0.71
VPS39-201ENST00000318006 B4GALT7Q9UBV7 327 aa10.6□□□□□ -0.71
VPS39-201ENST00000318006 CCDC163A0A0D9SF12 145 aa10.6□□□□□ -0.71
VPS39-201ENST00000318006 OTOL1A6NHN0 477 aaPredicted RBP10.6□□□□□ -0.71
VPS39-201ENST00000318006 UMAD1C9J7I0 102 aa10.6□□□□□ -0.71
VPS39-201ENST00000318006 ZNF587BE7ETH6 402 aa10.6□□□□□ -0.71
VPS39-201ENST00000318006 LGI1O95970 557 aa10.6□□□□□ -0.71
VPS39-201ENST00000318006 NPPBP16860 134 aa10.6□□□□□ -0.71
VPS39-201ENST00000318006 ARRB2P32121 409 aa10.6□□□□□ -0.71
VPS39-201ENST00000318006 EFNA3P52797 238 aa10.6□□□□□ -0.71
VPS39-201ENST00000318006 REEP5Q00765 189 aa10.6□□□□□ -0.71
VPS39-201ENST00000318006 SCGB2A2Q13296 93 aa10.6□□□□□ -0.71
VPS39-201ENST00000318006 FAM111BQ6SJ93 734 aa10.6□□□□□ -0.71
VPS39-201ENST00000318006 IL22RA1Q8N6P7 574 aa10.6□□□□□ -0.71
VPS39-201ENST00000318006 KCNG3Q8TAE7 436 aa10.6□□□□□ -0.71
VPS39-201ENST00000318006 RNF32Q9H0A6 362 aa10.6□□□□□ -0.71
VPS39-201ENST00000318006 HRASLSQ9HDD0 168 aa10.6□□□□□ -0.71
VPS39-201ENST00000318006 POMT2Q9UKY4 750 aa10.6□□□□□ -0.71
VPS39-201ENST00000318006 SRPK3Q9UPE1 567 aa10.6□□□□□ -0.71
VPS39-201ENST00000318006 ANKRD31Q8N7Z5 1873 aa10.6□□□□□ -0.71
VPS39-201ENST00000318006 CXCL10P02778 98 aa10.6□□□□□ -0.71
VPS39-201ENST00000318006 FOLR1P15328 257 aa10.6□□□□□ -0.71
VPS39-201ENST00000318006 RPS15P62841 145 aaKnown RBP10.6□□□□□ -0.71
VPS39-201ENST00000318006 CST9LP1Q5W188 147 aa10.6□□□□□ -0.71
VPS39-201ENST00000318006 LHX8Q68G74 356 aa10.6□□□□□ -0.71
VPS39-201ENST00000318006 PRICKLE2Q7Z3G6 844 aa10.6□□□□□ -0.71
VPS39-201ENST00000318006 ADGRE4PQ86SQ3 457 aa10.6□□□□□ -0.71
VPS39-201ENST00000318006 RDH10Q8IZV5 341 aa10.6□□□□□ -0.71
VPS39-201ENST00000318006 FAM160A2Q8N612 972 aaPredicted RBP10.6□□□□□ -0.71
VPS39-201ENST00000318006 OR1J2Q8NGS2 313 aa10.6□□□□□ -0.71
VPS39-201ENST00000318006 MITD1Q8WV92 249 aa10.6□□□□□ -0.71
VPS39-201ENST00000318006 TMEM231Q9H6L2 316 aa10.6□□□□□ -0.71
VPS39-201ENST00000318006 SLC39A9Q9NUM3 307 aa10.6□□□□□ -0.71
VPS39-201ENST00000318006 NUMA1Q14980 2115 aa10.6□□□□□ -0.71
VPS39-201ENST00000318006 MYO7AQ13402 2215 aa10.6□□□□□ -0.71
VPS39-201ENST00000318006 A6NLC8 198 aa10.6□□□□□ -0.71
VPS39-201ENST00000318006 RGS13O14921 159 aa10.6□□□□□ -0.71
VPS39-201ENST00000318006 GNB3P16520 340 aa10.6□□□□□ -0.71
VPS39-201ENST00000318006 CD53P19397 219 aa10.6□□□□□ -0.71
VPS39-201ENST00000318006 RFX2P48378 723 aa10.6□□□□□ -0.71
VPS39-201ENST00000318006 CD300CQ08708 224 aa10.6□□□□□ -0.71
VPS39-201ENST00000318006 CLINT1Q14677 625 aa10.6□□□□□ -0.71
VPS39-201ENST00000318006 ADIRFQ15847 76 aa10.6□□□□□ -0.71
VPS39-201ENST00000318006 KIAA0895LQ68EN5 471 aa10.6□□□□□ -0.71
VPS39-201ENST00000318006 FAHD1Q6P587 224 aa10.6□□□□□ -0.71
VPS39-201ENST00000318006 TMEM179BQ7Z7N9 219 aa10.6□□□□□ -0.71
VPS39-201ENST00000318006 GLCCI1Q86VQ1 547 aa10.6□□□□□ -0.71
VPS39-201ENST00000318006 OR9A4Q8NGU2 314 aa10.6□□□□□ -0.71
VPS39-201ENST00000318006 ASB13Q8WXK3 278 aa10.6□□□□□ -0.71
VPS39-201ENST00000318006 VSX1Q9NZR4 365 aaPredicted RBP10.6□□□□□ -0.71
VPS39-201ENST00000318006 CSAG2Q9Y5P2 127 aa10.6□□□□□ -0.71
VPS39-201ENST00000318006 COL11A2P13942 1736 aaPredicted RBP10.59□□□□□ -0.71
VPS39-201ENST00000318006 OR5H14A6NHG9 310 aa10.59□□□□□ -0.71
VPS39-201ENST00000318006 NUDT21O43809 227 aaKnown RBP10.59□□□□□ -0.71
VPS39-201ENST00000318006 HLA-HP01893 362 aa10.59□□□□□ -0.71
VPS39-201ENST00000318006 TK1P04183 234 aa10.59□□□□□ -0.71
VPS39-201ENST00000318006 LPLP06858 475 aa10.59□□□□□ -0.71
VPS39-201ENST00000318006 FABP1P07148 127 aa10.59□□□□□ -0.71
VPS39-201ENST00000318006 NFYBP25208 207 aa10.59□□□□□ -0.71
VPS39-201ENST00000318006 CXCL12P48061 93 aa10.59□□□□□ -0.71
VPS39-201ENST00000318006 ERVK-16P61578 105 aa10.59□□□□□ -0.71
VPS39-201ENST00000318006 BAMBIQ13145 260 aa10.59□□□□□ -0.71
VPS39-201ENST00000318006 MLC1Q15049 377 aa10.59□□□□□ -0.71
VPS39-201ENST00000318006 TMEM184AQ6ZMB5 413 aa10.59□□□□□ -0.71
VPS39-201ENST00000318006 PRR22Q8IZ63 422 aa10.59□□□□□ -0.71
VPS39-201ENST00000318006 SLC43A2Q8N370 569 aa10.59□□□□□ -0.71
VPS39-201ENST00000318006 OR14L1PQ8NHC6 308 aa10.59□□□□□ -0.71
VPS39-201ENST00000318006 UPRTQ96BW1 309 aa10.59□□□□□ -0.71
VPS39-201ENST00000318006 OR10A5Q9H207 317 aa10.59□□□□□ -0.71
VPS39-201ENST00000318006 OR10A2Q9H208 303 aa10.59□□□□□ -0.71
VPS39-201ENST00000318006 WDR76Q9H967 626 aa10.59□□□□□ -0.71
VPS39-201ENST00000318006 SLC25A37Q9NYZ2 338 aa10.59□□□□□ -0.71
VPS39-201ENST00000318006 TBX21Q9UL17 535 aa10.59□□□□□ -0.71
VPS39-201ENST00000318006 ZNF831Q5JPB2 1677 aa10.59□□□□□ -0.71
VPS39-201ENST00000318006 MDFIC2A0A1B0GVS7 189 aa10.59□□□□□ -0.71
VPS39-201ENST00000318006 PPP5D1E7EU14 171 aa10.59□□□□□ -0.71
VPS39-201ENST00000318006 JTBO76095 146 aa10.59□□□□□ -0.71
VPS39-201ENST00000318006 MBP02144 154 aa10.59□□□□□ -0.71
VPS39-201ENST00000318006 CD1EP15812 388 aa10.59□□□□□ -0.71
VPS39-201ENST00000318006 EPHA5P54756 1037 aa10.59□□□□□ -0.71
VPS39-201ENST00000318006 FABP5Q01469 135 aa10.59□□□□□ -0.71
VPS39-201ENST00000318006 TPBGQ13641 420 aa10.59□□□□□ -0.71
VPS39-201ENST00000318006 GDF7Q7Z4P5 450 aa10.59□□□□□ -0.71
VPS39-201ENST00000318006 ADGRG3Q86Y34 549 aa10.59□□□□□ -0.71
VPS39-201ENST00000318006 NXPE3Q969Y0 559 aa10.59□□□□□ -0.71
Retrieved 100 of 20,778 RNA–protein pairs in 44.5 ms