RNA–Protein interactions for RNA: ENST00000308508.5

CSPG4-201, Transcript of chondroitin sulfate proteoglycan 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CSPG4, Length 8,290 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSPG4-201ENST00000308508 NXPH3O95157 252 aa12.83□□□□□ -0.36
CSPG4-201ENST00000308508 ITGB7P26010 798 aa12.83□□□□□ -0.36
CSPG4-201ENST00000308508 RPUSD3Q6P087 351 aaKnown RBP12.83□□□□□ -0.36
CSPG4-201ENST00000308508 TMEM130Q8N3G9 435 aa12.83□□□□□ -0.36
CSPG4-201ENST00000308508 NECAP1Q8NC96 275 aa12.83□□□□□ -0.36
CSPG4-201ENST00000308508 DYNLRB1Q9NP97 96 aa12.83□□□□□ -0.36
CSPG4-201ENST00000308508 RD3LP0DJH9 198 aa12.83□□□□□ -0.36
CSPG4-201ENST00000308508 CNEP1R1Q8N9A8 125 aa12.83□□□□□ -0.36
CSPG4-201ENST00000308508 HSD17B8Q92506 261 aa12.83□□□□□ -0.36
CSPG4-201ENST00000308508 CHRDL1Q9BU40 450 aa12.83□□□□□ -0.36
CSPG4-201ENST00000308508 SUCNR1Q9BXA5 334 aa12.83□□□□□ -0.36
CSPG4-201ENST00000308508 C12orf10Q9HB07 376 aa12.83□□□□□ -0.36
CSPG4-201ENST00000308508 ZNF727A8MUV8 499 aa12.83□□□□□ -0.36
CSPG4-201ENST00000308508 CALCBP10092 127 aa12.83□□□□□ -0.36
CSPG4-201ENST00000308508 CD70P32970 193 aa12.83□□□□□ -0.36
CSPG4-201ENST00000308508 NKX2-1P43699 371 aaPredicted RBP12.83□□□□□ -0.36
CSPG4-201ENST00000308508 C15orf39Q6ZRI6 1047 aa12.83□□□□□ -0.36
CSPG4-201ENST00000308508 NKX2-4Q9H2Z4 354 aa12.83□□□□□ -0.36
CSPG4-201ENST00000308508 CRYM-AS1A6NIL9 109 aa12.83□□□□□ -0.36
CSPG4-201ENST00000308508 HEPACAM2A8MVW5 462 aa12.83□□□□□ -0.36
CSPG4-201ENST00000308508 TMEM102Q8N9M5 508 aaPredicted RBP12.83□□□□□ -0.36
CSPG4-201ENST00000308508 ZBTB44Q8NCP5 570 aa12.83□□□□□ -0.36
CSPG4-201ENST00000308508 LIPHQ8WWY8 451 aa12.83□□□□□ -0.36
CSPG4-201ENST00000308508 NUDT22Q9BRQ3 303 aa12.83□□□□□ -0.36
CSPG4-201ENST00000308508 VAMP8Q9BV40 100 aa12.83□□□□□ -0.36
CSPG4-201ENST00000308508 BOKQ9UMX3 212 aaPredicted RBP12.83□□□□□ -0.36
CSPG4-201ENST00000308508 TRBV11-1A0A0K0K1C0 115 aa12.83□□□□□ -0.36
CSPG4-201ENST00000308508 ZNF280AP59817 542 aaPredicted RBP12.83□□□□□ -0.36
CSPG4-201ENST00000308508 NHSL2Q5HYW2 709 aa12.83□□□□□ -0.36
CSPG4-201ENST00000308508 SYT13Q7L8C5 426 aa12.83□□□□□ -0.36
CSPG4-201ENST00000308508 ISG20Q96AZ6 181 aaKnown RBP12.83□□□□□ -0.36
CSPG4-201ENST00000308508 LYRM2Q9NU23 88 aaPredicted RBP12.83□□□□□ -0.36
CSPG4-201ENST00000308508 IL17CQ9P0M4 197 aa12.83□□□□□ -0.36
CSPG4-201ENST00000308508 ZFAND5O76080 213 aa12.83□□□□□ -0.36
CSPG4-201ENST00000308508 ELAVL4P26378 380 aaKnown RBP12.83□□□□□ -0.36
CSPG4-201ENST00000308508 CD80P33681 288 aa12.83□□□□□ -0.36
CSPG4-201ENST00000308508 EMP3P54852 163 aa12.83□□□□□ -0.36
CSPG4-201ENST00000308508 TAS2R45P59539 299 aa12.83□□□□□ -0.36
CSPG4-201ENST00000308508 MPPED2Q15777 294 aa12.83□□□□□ -0.36
CSPG4-201ENST00000308508 PLAC9Q5JTB6 97 aa12.83□□□□□ -0.36
CSPG4-201ENST00000308508 CAPNS2Q96L46 248 aa12.83□□□□□ -0.36
CSPG4-201ENST00000308508 C8orf33Q9H7E9 229 aaPredicted RBP12.83□□□□□ -0.36
CSPG4-201ENST00000308508 KCNG2Q9UJ96 466 aa12.83□□□□□ -0.36
CSPG4-201ENST00000308508 GLTPD2A6NH11 291 aa12.82□□□□□ -0.36
CSPG4-201ENST00000308508 G0S2P27469 103 aa12.82□□□□□ -0.36
CSPG4-201ENST00000308508 OR10A3P58181 314 aa12.82□□□□□ -0.36
CSPG4-201ENST00000308508 TPPP2P59282 170 aa12.82□□□□□ -0.36
CSPG4-201ENST00000308508 ZNF626Q68DY1 528 aa12.82□□□□□ -0.36
CSPG4-201ENST00000308508 LRRTM1Q86UE6 522 aa12.82□□□□□ -0.36
CSPG4-201ENST00000308508 ZNF761Q86XN6 746 aaPredicted RBP12.82□□□□□ -0.36
CSPG4-201ENST00000308508 MUCL1Q96DR8 90 aa12.82□□□□□ -0.36
CSPG4-201ENST00000308508 CHRM2P08172 466 aa12.82□□□□□ -0.36
CSPG4-201ENST00000308508 GCAP28676 217 aa12.82□□□□□ -0.36
CSPG4-201ENST00000308508 IQCJQ1A5X6 159 aa12.82□□□□□ -0.36
CSPG4-201ENST00000308508 OR13D1Q8NGV5 346 aa12.82□□□□□ -0.36
CSPG4-201ENST00000308508 SEH1LQ96EE3 360 aa12.82□□□□□ -0.36
CSPG4-201ENST00000308508 CTDSP1Q9GZU7 261 aa12.82□□□□□ -0.36
CSPG4-201ENST00000308508 TOLLIPQ9H0E2 274 aa12.82□□□□□ -0.36
CSPG4-201ENST00000308508 ZNF768Q9H5H4 540 aaKnown RBP12.82□□□□□ -0.36
CSPG4-201ENST00000308508 A0A0A6YYJ9 748 aa12.82□□□□□ -0.36
CSPG4-201ENST00000308508 KIR2DS5A0A0G2JLQ3 304 aa12.82□□□□□ -0.36
CSPG4-201ENST00000308508 A0A0G2JNG1 304 aa12.82□□□□□ -0.36
CSPG4-201ENST00000308508 KIR2DS3K7RE56 304 aa12.82□□□□□ -0.36
CSPG4-201ENST00000308508 NXPH2O95156 264 aa12.82□□□□□ -0.36
CSPG4-201ENST00000308508 GPR75O95800 540 aa12.82□□□□□ -0.36
CSPG4-201ENST00000308508 NME1P15531 152 aaKnown RBP12.82□□□□□ -0.36
CSPG4-201ENST00000308508 WNT7BP56706 349 aa12.82□□□□□ -0.36
CSPG4-201ENST00000308508 REEP5Q00765 189 aa12.82□□□□□ -0.36
CSPG4-201ENST00000308508 ZNF85Q03923 595 aa12.82□□□□□ -0.36
CSPG4-201ENST00000308508 KIR2DS5Q14953 304 aa12.82□□□□□ -0.36
CSPG4-201ENST00000308508 RPL7L1Q6DKI1 246 aaKnown RBP12.82□□□□□ -0.36
CSPG4-201ENST00000308508 Q6ZPB1 254 aaPredicted RBP12.82□□□□□ -0.36
CSPG4-201ENST00000308508 NAXDQ8IW45 347 aa12.82□□□□□ -0.36
CSPG4-201ENST00000308508 CLRN3Q8NCR9 226 aa12.82□□□□□ -0.36
CSPG4-201ENST00000308508 ELF4Q99607 663 aaPredicted RBP12.82□□□□□ -0.36
CSPG4-201ENST00000308508 SLAMF8Q9P0V8 285 aa12.82□□□□□ -0.36
CSPG4-201ENST00000308508 TACR1P25103 407 aa12.82□□□□□ -0.36
CSPG4-201ENST00000308508 ZNF252P-AS1Q0IIN9 211 aa12.82□□□□□ -0.36
CSPG4-201ENST00000308508 MFAP5Q13361 173 aa12.82□□□□□ -0.36
CSPG4-201ENST00000308508 CPXM2Q8N436 756 aa12.82□□□□□ -0.36
CSPG4-201ENST00000308508 OR51A2Q8NGJ7 313 aa12.82□□□□□ -0.36
CSPG4-201ENST00000308508 KCNJ15Q99712 375 aa12.82□□□□□ -0.36
CSPG4-201ENST00000308508 RFPL4AA6NLU0 287 aa12.82□□□□□ -0.36
CSPG4-201ENST00000308508 ZNF732B4DXR9 585 aa12.82□□□□□ -0.36
CSPG4-201ENST00000308508 RFPL4AL1F8VTS6 287 aa12.82□□□□□ -0.36
CSPG4-201ENST00000308508 SLC35A1P78382 337 aa12.82□□□□□ -0.36
CSPG4-201ENST00000308508 PDLIM5Q96HC4 596 aaKnown RBP12.82□□□□□ -0.36
CSPG4-201ENST00000308508 RAB18Q9NP72 206 aa12.82□□□□□ -0.36
CSPG4-201ENST00000308508 A4GALTQ9NPC4 353 aa12.82□□□□□ -0.36
CSPG4-201ENST00000308508 NGBQ9NPG2 151 aa12.82□□□□□ -0.36
CSPG4-201ENST00000308508 A0A0A6YYC8 382 aaPredicted RBP12.82□□□□□ -0.36
CSPG4-201ENST00000308508 H3BQ06 376 aaPredicted RBP12.82□□□□□ -0.36
CSPG4-201ENST00000308508 I3L1I5 382 aaPredicted RBP12.82□□□□□ -0.36
CSPG4-201ENST00000308508 SRP9P49458 86 aaKnown RBP12.82□□□□□ -0.36
CSPG4-201ENST00000308508 RAB7AP51149 207 aa12.82□□□□□ -0.36
CSPG4-201ENST00000308508 SLC46A1Q96NT5 459 aa12.82□□□□□ -0.36
CSPG4-201ENST00000308508 FYTTD1Q96QD9 318 aaKnown RBP12.82□□□□□ -0.36
CSPG4-201ENST00000308508 SYT17Q9BSW7 474 aa12.82□□□□□ -0.36
CSPG4-201ENST00000308508 B3GALT5Q9Y2C3 310 aa12.82□□□□□ -0.36
CSPG4-201ENST00000308508 SDK1Q7Z5N4 2213 aa12.82□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 35.9 ms