RNA–Protein interactions for RNA: ENST00000292510.5

VPS28-201, Transcript of VPS28, ESCRT-I subunit, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS28, Length 979 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-201ENST00000292510 ZNF519Q8TB69 540 aa11.67□□□□□ -0.54
VPS28-201ENST00000292510 MAGEE2Q8TD90 523 aaPredicted RBP11.67□□□□□ -0.54
VPS28-201ENST00000292510 SLCO4A1Q96BD0 722 aa11.67□□□□□ -0.54
VPS28-201ENST00000292510 Q96M85 177 aa11.67□□□□□ -0.54
VPS28-201ENST00000292510 KCNK17Q96T54 332 aa11.67□□□□□ -0.54
VPS28-201ENST00000292510 CCM2LQ9NUG4 571 aaPredicted RBP11.67□□□□□ -0.54
VPS28-201ENST00000292510 ST6GALNAC2Q9UJ37 374 aa11.67□□□□□ -0.54
VPS28-201ENST00000292510 ITGB1BP2Q9UKP3 347 aa11.67□□□□□ -0.54
VPS28-201ENST00000292510 SAMHD1Q9Y3Z3 626 aaKnown RBP11.67□□□□□ -0.54
VPS28-201ENST00000292510 RNF115Q9Y4L5 304 aa11.67□□□□□ -0.54
VPS28-201ENST00000292510 RRP9O43818 475 aaKnown RBP11.66□□□□□ -0.54
VPS28-201ENST00000292510 CCNB2O95067 398 aa11.66□□□□□ -0.54
VPS28-201ENST00000292510 FPR3P25089 353 aa11.66□□□□□ -0.54
VPS28-201ENST00000292510 CD40P25942 277 aa11.66□□□□□ -0.54
VPS28-201ENST00000292510 IFNGR2P38484 337 aa11.66□□□□□ -0.54
VPS28-201ENST00000292510 GSSP48637 474 aa11.66□□□□□ -0.54
VPS28-201ENST00000292510 IST1P53990 364 aa11.66□□□□□ -0.54
VPS28-201ENST00000292510 TAF11Q15544 211 aa11.66□□□□□ -0.54
VPS28-201ENST00000292510 MESTQ5EB52 335 aa11.66□□□□□ -0.54
VPS28-201ENST00000292510 C1orf94Q6P1W5 598 aa11.66□□□□□ -0.54
VPS28-201ENST00000292510 SMARCD3Q6STE5 483 aa11.66□□□□□ -0.54
VPS28-201ENST00000292510 KLHL17Q6TDP4 642 aa11.66□□□□□ -0.54
VPS28-201ENST00000292510 TMEM108Q6UXF1 575 aa11.66□□□□□ -0.54
VPS28-201ENST00000292510 ASRGL1Q7L266 308 aa11.66□□□□□ -0.54
VPS28-201ENST00000292510 ZNF627Q7L945 461 aa11.66□□□□□ -0.54
VPS28-201ENST00000292510 SSX8Q7RTT4 187 aa11.66□□□□□ -0.54
VPS28-201ENST00000292510 FAM122BQ7Z309 247 aa11.66□□□□□ -0.54
VPS28-201ENST00000292510 HDDC2Q7Z4H3 204 aa11.66□□□□□ -0.54
VPS28-201ENST00000292510 FANK1Q8TC84 345 aa11.66□□□□□ -0.54
VPS28-201ENST00000292510 GNPDA2Q8TDQ7 276 aa11.66□□□□□ -0.54
VPS28-201ENST00000292510 NSMAFQ92636 917 aa11.66□□□□□ -0.54
VPS28-201ENST00000292510 AKAP1Q92667 903 aaKnown RBP eCLIP11.66□□□□□ -0.54
VPS28-201ENST00000292510 POP5Q969H6 163 aaKnown RBP11.66□□□□□ -0.54
VPS28-201ENST00000292510 RASD2Q96D21 266 aa11.66□□□□□ -0.54
VPS28-201ENST00000292510 NMD3Q96D46 503 aaKnown RBP11.66□□□□□ -0.54
VPS28-201ENST00000292510 REEP1Q9H902 201 aa11.66□□□□□ -0.54
VPS28-201ENST00000292510 SEC61A2Q9H9S3 476 aa11.66□□□□□ -0.54
VPS28-201ENST00000292510 NOX3Q9HBY0 568 aa11.66□□□□□ -0.54
VPS28-201ENST00000292510 OBP2BQ9NPH6 170 aa11.66□□□□□ -0.54
VPS28-201ENST00000292510 ZNF224Q9NZL3 707 aa11.66□□□□□ -0.54
VPS28-201ENST00000292510 IGHV1-18A0A0C4DH31 117 aa11.65□□□□□ -0.54
VPS28-201ENST00000292510 TEX13CA0A0J9YWL9 993 aa11.65□□□□□ -0.54
VPS28-201ENST00000292510 CENPBD1B2RD01 187 aa11.65□□□□□ -0.54
VPS28-201ENST00000292510 SHISA9B4DS77 424 aa11.65□□□□□ -0.54
VPS28-201ENST00000292510 IMPA2O14732 288 aa11.65□□□□□ -0.54
VPS28-201ENST00000292510 ARHGEF9O43307 516 aa11.65□□□□□ -0.54
VPS28-201ENST00000292510 FKBP6O75344 327 aa11.65□□□□□ -0.54
VPS28-201ENST00000292510 ATE1O95260 518 aa11.65□□□□□ -0.54
VPS28-201ENST00000292510 PPP1R3DO95685 299 aa11.65□□□□□ -0.54
VPS28-201ENST00000292510 GASTP01350 101 aa11.65□□□□□ -0.54
VPS28-201ENST00000292510 HLA-HP01893 362 aa11.65□□□□□ -0.54
VPS28-201ENST00000292510 CELA3BP08861 270 aa11.65□□□□□ -0.54
VPS28-201ENST00000292510 PATE4P0C8F1 98 aa11.65□□□□□ -0.54
VPS28-201ENST00000292510 PTAFRP25105 342 aa11.65□□□□□ -0.54
VPS28-201ENST00000292510 TSPAN31Q12999 210 aa11.65□□□□□ -0.54
VPS28-201ENST00000292510 C1orf146Q5VVC0 180 aa11.65□□□□□ -0.54
VPS28-201ENST00000292510 ZNF770Q6IQ21 691 aaPredicted RBP11.65□□□□□ -0.54
VPS28-201ENST00000292510 TMEM179BQ7Z7N9 219 aa11.65□□□□□ -0.54
VPS28-201ENST00000292510 MDP1Q86V88 176 aa11.65□□□□□ -0.54
VPS28-201ENST00000292510 MYPOPQ86VE0 399 aaPredicted RBP11.65□□□□□ -0.54
VPS28-201ENST00000292510 SKA3Q8IX90 412 aa11.65□□□□□ -0.54
VPS28-201ENST00000292510 ARIH2OSQ8N7S6 290 aa11.65□□□□□ -0.54
VPS28-201ENST00000292510 FGFBP3Q8TAT2 258 aa11.65□□□□□ -0.54
VPS28-201ENST00000292510 UTP4Q969X6 686 aaKnown RBP11.65□□□□□ -0.54
VPS28-201ENST00000292510 SAMD8Q96LT4 415 aa11.65□□□□□ -0.54
VPS28-201ENST00000292510 ZNF570Q96NI8 536 aa11.65□□□□□ -0.54
VPS28-201ENST00000292510 SLC38A2Q96QD8 506 aa11.65□□□□□ -0.54
VPS28-201ENST00000292510 GPX7Q96SL4 187 aaPredicted RBP11.65□□□□□ -0.54
VPS28-201ENST00000292510 SH3GL3Q99963 347 aa11.65□□□□□ -0.54
VPS28-201ENST00000292510 ALG12Q9BV10 488 aa11.65□□□□□ -0.54
VPS28-201ENST00000292510 OR52D1Q9H346 318 aa11.65□□□□□ -0.54
VPS28-201ENST00000292510 MMADHCQ9H3L0 296 aaPredicted RBP11.65□□□□□ -0.54
VPS28-201ENST00000292510 EGLN3Q9H6Z9 239 aa11.65□□□□□ -0.54
VPS28-201ENST00000292510 NRIP3Q9NQ35 241 aa11.65□□□□□ -0.54
VPS28-201ENST00000292510 TMEM38BQ9NVV0 291 aa11.65□□□□□ -0.54
VPS28-201ENST00000292510 STX18Q9P2W9 335 aaKnown RBP11.65□□□□□ -0.54
VPS28-201ENST00000292510 GRHPRQ9UBQ7 328 aa11.65□□□□□ -0.54
VPS28-201ENST00000292510 IER3IP1Q9Y5U9 82 aa11.65□□□□□ -0.54
VPS28-201ENST00000292510 MAGED1Q9Y5V3 778 aaPredicted RBP11.65□□□□□ -0.54
VPS28-201ENST00000292510 MAP1AP78559 2803 aaPredicted RBP11.65□□□□□ -0.54
VPS28-201ENST00000292510 VPS13CQ709C8 3753 aa11.64□□□□□ -0.55
VPS28-201ENST00000292510 A6NIZ1 184 aa11.64□□□□□ -0.55
VPS28-201ENST00000292510 EBAG9O00559 213 aa11.64□□□□□ -0.55
VPS28-201ENST00000292510 SOCS2O14508 198 aa11.64□□□□□ -0.55
VPS28-201ENST00000292510 GNGT2O14610 69 aa11.64□□□□□ -0.55
VPS28-201ENST00000292510 HS3ST1O14792 307 aa11.64□□□□□ -0.55
VPS28-201ENST00000292510 RAF1P04049 648 aa11.64□□□□□ -0.55
VPS28-201ENST00000292510 IGFBP1P08833 259 aaPredicted RBP11.64□□□□□ -0.55
VPS28-201ENST00000292510 CD79AP11912 226 aa11.64□□□□□ -0.55
VPS28-201ENST00000292510 HOXB1P14653 301 aaPredicted RBP11.64□□□□□ -0.55
VPS28-201ENST00000292510 CD53P19397 219 aa11.64□□□□□ -0.55
VPS28-201ENST00000292510 DNASE1P24855 282 aa11.64□□□□□ -0.55
VPS28-201ENST00000292510 CDAP32320 146 aa11.64□□□□□ -0.55
VPS28-201ENST00000292510 ZNF84P51523 738 aa11.64□□□□□ -0.55
VPS28-201ENST00000292510 IDH3GP51553 393 aaPredicted RBP11.64□□□□□ -0.55
VPS28-201ENST00000292510 ZNF133P52736 654 aaPredicted RBP11.64□□□□□ -0.55
VPS28-201ENST00000292510 CDH11P55287 796 aa11.64□□□□□ -0.55
VPS28-201ENST00000292510 RAP1BP61224 184 aa11.64□□□□□ -0.55
VPS28-201ENST00000292510 RAP1AP62834 184 aa11.64□□□□□ -0.55
VPS28-201ENST00000292510 PIGFQ07326 219 aa11.64□□□□□ -0.55
Retrieved 100 of 20,778 RNA–protein pairs in 54.5 ms