RNA–Protein interactions for RNA: ENST00000262803.9

UPF1-201, Transcript of UPF1, RNA helicase and ATPase, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene UPF1, Length 5,348 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-201ENST00000262803 RNLSQ5VYX0 342 aa17.62■□□□□ 0.41
UPF1-201ENST00000262803 ADGRE4PQ86SQ3 457 aa17.62■□□□□ 0.41
UPF1-201ENST00000262803 FRZBQ92765 325 aa17.62■□□□□ 0.41
UPF1-201ENST00000262803 BIN3Q9NQY0 253 aa17.62■□□□□ 0.41
UPF1-201ENST00000262803 SSUH2Q9Y2M2 353 aa17.62■□□□□ 0.41
UPF1-201ENST00000262803 PLCH1Q4KWH8 1693 aa17.62■□□□□ 0.41
UPF1-201ENST00000262803 HMGA1P17096 107 aaKnown RBP17.61■□□□□ 0.41
UPF1-201ENST00000262803 RAB4AP20338 218 aa17.61■□□□□ 0.41
UPF1-201ENST00000262803 SDHBP21912 280 aa17.61■□□□□ 0.41
UPF1-201ENST00000262803 FOXK2Q01167 660 aa17.61■□□□□ 0.41
UPF1-201ENST00000262803 OLIG1Q8TAK6 271 aa17.61■□□□□ 0.41
UPF1-201ENST00000262803 CPNE4Q96A23 557 aaPredicted RBP17.61■□□□□ 0.41
UPF1-201ENST00000262803 CNTNAP3Q9BZ76 1288 aa17.61■□□□□ 0.41
UPF1-201ENST00000262803 KCNG2Q9UJ96 466 aa17.61■□□□□ 0.41
UPF1-201ENST00000262803 OR2A25A4D2G3 310 aa17.61■□□□□ 0.41
UPF1-201ENST00000262803 SOCS6O14544 535 aa17.61■□□□□ 0.41
UPF1-201ENST00000262803 AGPAT2O15120 278 aa17.61■□□□□ 0.41
UPF1-201ENST00000262803 CRYZL1O95825 349 aa17.61■□□□□ 0.41
UPF1-201ENST00000262803 CD53P19397 219 aa17.61■□□□□ 0.41
UPF1-201ENST00000262803 IGFBP6P24592 240 aaPredicted RBP17.61■□□□□ 0.41
UPF1-201ENST00000262803 CCL11P51671 97 aa17.61■□□□□ 0.41
UPF1-201ENST00000262803 NKAIN1Q4KMZ8 207 aa17.61■□□□□ 0.41
UPF1-201ENST00000262803 RTN4RL1Q86UN2 441 aaPredicted RBP17.61■□□□□ 0.41
UPF1-201ENST00000262803 NPAP1Q9NZP6 1156 aa17.61■□□□□ 0.41
UPF1-201ENST00000262803 POLDIP2Q9Y2S7 368 aa17.61■□□□□ 0.41
UPF1-201ENST00000262803 KNL1Q8NG31 2342 aa17.61■□□□□ 0.41
UPF1-201ENST00000262803 LIM2P55344 173 aa17.61■□□□□ 0.41
UPF1-201ENST00000262803 ISL1P61371 349 aa17.61■□□□□ 0.41
UPF1-201ENST00000262803 PLA2G7Q13093 441 aa17.61■□□□□ 0.41
UPF1-201ENST00000262803 ZNF687Q8N1G0 1237 aa17.61■□□□□ 0.41
UPF1-201ENST00000262803 OR2L13Q8N349 312 aa17.61■□□□□ 0.41
UPF1-201ENST00000262803 OR52I1Q8NGK6 324 aa17.61■□□□□ 0.41
UPF1-201ENST00000262803 OR13C9Q8NGT0 318 aa17.61■□□□□ 0.41
UPF1-201ENST00000262803 CSF3RQ99062 836 aa17.61■□□□□ 0.41
UPF1-201ENST00000262803 CDCP1Q9H5V8 836 aa17.61■□□□□ 0.41
UPF1-201ENST00000262803 A0A1B0GUL6 1792 aa17.61■□□□□ 0.41
UPF1-201ENST00000262803 GSTP1P09211 210 aaKnown RBP17.61■□□□□ 0.41
UPF1-201ENST00000262803 HTRA3P83110 453 aa17.61■□□□□ 0.41
UPF1-201ENST00000262803 ACSM1Q08AH1 577 aa17.61■□□□□ 0.41
UPF1-201ENST00000262803 HNF4GQ14541 408 aa17.61■□□□□ 0.41
UPF1-201ENST00000262803 AARDQ4LEZ3 155 aa17.61■□□□□ 0.41
UPF1-201ENST00000262803 SFXN4Q6P4A7 337 aa17.61■□□□□ 0.41
UPF1-201ENST00000262803 LINC00696Q6ZRV3 163 aa17.61■□□□□ 0.41
UPF1-201ENST00000262803 OLIG3Q7RTU3 272 aa17.61■□□□□ 0.41
UPF1-201ENST00000262803 HAS2Q92819 552 aa17.61■□□□□ 0.41
UPF1-201ENST00000262803 METTL17Q9H7H0 456 aaPredicted RBP17.61■□□□□ 0.41
UPF1-201ENST00000262803 FKRPQ9H9S5 495 aa17.61■□□□□ 0.41
UPF1-201ENST00000262803 A0A087WZY1 265 aa17.6■□□□□ 0.41
UPF1-201ENST00000262803 BCL6P41182 706 aa17.6■□□□□ 0.41
UPF1-201ENST00000262803 ADPRHP54922 357 aa17.6■□□□□ 0.41
UPF1-201ENST00000262803 GAB1Q13480 694 aa17.6■□□□□ 0.41
UPF1-201ENST00000262803 DYRK1AQ13627 763 aa17.6■□□□□ 0.41
UPF1-201ENST00000262803 ZNF266Q14584 549 aa17.6■□□□□ 0.41
UPF1-201ENST00000262803 FAM74A1Q5RGS3 127 aa17.6■□□□□ 0.41
UPF1-201ENST00000262803 Q6ZNX1 250 aa17.6■□□□□ 0.41
UPF1-201ENST00000262803 ABHD4Q8TB40 342 aa17.6■□□□□ 0.41
UPF1-201ENST00000262803 TMEM255BQ8WV15 326 aa17.6■□□□□ 0.41
UPF1-201ENST00000262803 AGAP14A8MT82 685 aa17.6■□□□□ 0.41
UPF1-201ENST00000262803 H7C1C5 153 aa17.6■□□□□ 0.41
UPF1-201ENST00000262803 ZNF195O14628 629 aa17.6■□□□□ 0.41
UPF1-201ENST00000262803 NSA2O95478 260 aaKnown RBP17.6■□□□□ 0.41
UPF1-201ENST00000262803 PGFP49763 221 aa17.6■□□□□ 0.41
UPF1-201ENST00000262803 FCRL6Q6DN72 434 aa17.6■□□□□ 0.41
UPF1-201ENST00000262803 IFI44Q8TCB0 444 aa17.6■□□□□ 0.41
UPF1-201ENST00000262803 TCEAL2Q9H3H9 227 aaPredicted RBP17.6■□□□□ 0.41
UPF1-201ENST00000262803 TMEM30AQ9NV96 361 aa17.6■□□□□ 0.41
UPF1-201ENST00000262803 EN2P19622 333 aaPredicted RBP17.6■□□□□ 0.41
UPF1-201ENST00000262803 GDNFP39905 211 aa17.6■□□□□ 0.41
UPF1-201ENST00000262803 AKR1C1Q04828 323 aa17.6■□□□□ 0.41
UPF1-201ENST00000262803 ZNF74Q16587 644 aa17.6■□□□□ 0.41
UPF1-201ENST00000262803 ZNF750Q32MQ0 723 aa17.6■□□□□ 0.41
UPF1-201ENST00000262803 GDF7Q7Z4P5 450 aa17.6■□□□□ 0.41
UPF1-201ENST00000262803 SEMA4CQ9C0C4 833 aa17.6■□□□□ 0.41
UPF1-201ENST00000262803 CLN5O75503 358 aa17.6■□□□□ 0.41
UPF1-201ENST00000262803 MAKP20794 623 aa17.6■□□□□ 0.41
UPF1-201ENST00000262803 CD1CP29017 333 aa17.6■□□□□ 0.41
UPF1-201ENST00000262803 SELENBP1Q13228 472 aa17.6■□□□□ 0.41
UPF1-201ENST00000262803 GALEQ14376 348 aa17.6■□□□□ 0.41
UPF1-201ENST00000262803 CST9Q5W186 159 aa17.6■□□□□ 0.41
UPF1-201ENST00000262803 GDPD3Q7L5L3 318 aa17.6■□□□□ 0.41
UPF1-201ENST00000262803 C1orf87Q8N0U7 546 aa17.6■□□□□ 0.41
UPF1-201ENST00000262803 OR4D6Q8NGJ1 314 aa17.6■□□□□ 0.41
UPF1-201ENST00000262803 LGALS14Q8TCE9 139 aa17.6■□□□□ 0.41
UPF1-201ENST00000262803 LIPHQ8WWY8 451 aa17.6■□□□□ 0.41
UPF1-201ENST00000262803 IER2Q9BTL4 223 aa17.6■□□□□ 0.41
UPF1-201ENST00000262803 ENSAO43768 121 aaKnown RBP17.59■□□□□ 0.41
UPF1-201ENST00000262803 GLAP06280 429 aa17.59■□□□□ 0.41
UPF1-201ENST00000262803 TBPP20226 339 aa17.59■□□□□ 0.41
UPF1-201ENST00000262803 PSMB1P20618 241 aaKnown RBP17.59■□□□□ 0.41
UPF1-201ENST00000262803 RPL27P61353 136 aaKnown RBP17.59■□□□□ 0.41
UPF1-201ENST00000262803 ST8SIA1Q92185 356 aa17.59■□□□□ 0.41
UPF1-201ENST00000262803 THOC3Q96J01 351 aaKnown RBP17.59■□□□□ 0.41
UPF1-201ENST00000262803 NMNAT3Q96T66 252 aa17.59■□□□□ 0.41
UPF1-201ENST00000262803 PRR14Q9BWN1 585 aa17.59■□□□□ 0.41
UPF1-201ENST00000262803 CLEC2DQ9UHP7 191 aa17.59■□□□□ 0.41
UPF1-201ENST00000262803 C19orf53Q9UNZ5 99 aaPredicted RBP17.59■□□□□ 0.41
UPF1-201ENST00000262803 TMEM202A6NGA9 273 aa17.59■□□□□ 0.41
UPF1-201ENST00000262803 PLPP1O14494 284 aa17.59■□□□□ 0.41
UPF1-201ENST00000262803 DFFBO76075 338 aa17.59■□□□□ 0.41
UPF1-201ENST00000262803 BLVRBP30043 206 aaPredicted RBP17.59■□□□□ 0.41
Retrieved 100 of 20,778 RNA–protein pairs in 51.4 ms