RNA–Protein interactions for RNA: ENST00000641009.1

LINC00339-211, long intergenic non-protein coding RNA 339, humanhuman

Gene LINC00339, Length 1,450 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00339-211ENST00000641009 RNF13O43567 381 aa12.01□□□□□ -0.49
LINC00339-211ENST00000641009 STAMBPO95630 424 aa12.01□□□□□ -0.49
LINC00339-211ENST00000641009 ADRA2AP08913 450 aa12.01□□□□□ -0.49
LINC00339-211ENST00000641009 PATE4P0C8F1 98 aa12.01□□□□□ -0.49
LINC00339-211ENST00000641009 ZNF35P13682 527 aa12.01□□□□□ -0.49
LINC00339-211ENST00000641009 H2AFXP16104 143 aaPredicted RBP12.01□□□□□ -0.49
LINC00339-211ENST00000641009 IGFBP5P24593 272 aa12.01□□□□□ -0.49
LINC00339-211ENST00000641009 GIPRP48546 466 aa12.01□□□□□ -0.49
LINC00339-211ENST00000641009 RAB1AP62820 205 aa12.01□□□□□ -0.49
LINC00339-211ENST00000641009 TRMT5Q32P41 509 aaKnown RBP12.01□□□□□ -0.49
LINC00339-211ENST00000641009 RABL3Q5HYI8 236 aa12.01□□□□□ -0.49
LINC00339-211ENST00000641009 INTS11Q5TA45 600 aaKnown RBP12.01□□□□□ -0.49
LINC00339-211ENST00000641009 METTL21CQ5VZV1 264 aa12.01□□□□□ -0.49
LINC00339-211ENST00000641009 FAM166AQ6J272 317 aa12.01□□□□□ -0.49
LINC00339-211ENST00000641009 NANOGP8Q6NSW7 305 aa12.01□□□□□ -0.49
LINC00339-211ENST00000641009 SNX32Q86XE0 403 aa12.01□□□□□ -0.49
LINC00339-211ENST00000641009 OR6X1Q8NH79 312 aa12.01□□□□□ -0.49
LINC00339-211ENST00000641009 TMEM54Q969K7 222 aa12.01□□□□□ -0.49
LINC00339-211ENST00000641009 SIKE1Q9BRV8 207 aa12.01□□□□□ -0.49
LINC00339-211ENST00000641009 SOX7Q9BT81 388 aa12.01□□□□□ -0.49
LINC00339-211ENST00000641009 ZNF426Q9BUY5 554 aa12.01□□□□□ -0.49
LINC00339-211ENST00000641009 TMEM120AQ9BXJ8 343 aa12.01□□□□□ -0.49
LINC00339-211ENST00000641009 SHARPINQ9H0F6 387 aa12.01□□□□□ -0.49
LINC00339-211ENST00000641009 PCDHAC1Q9H158 963 aa12.01□□□□□ -0.49
LINC00339-211ENST00000641009 TPK1Q9H3S4 243 aa12.01□□□□□ -0.49
LINC00339-211ENST00000641009 NANOGQ9H9S0 305 aa12.01□□□□□ -0.49
LINC00339-211ENST00000641009 GLTPQ9NZD2 209 aa12.01□□□□□ -0.49
LINC00339-211ENST00000641009 FBXO9Q9UK97 447 aaPredicted RBP12.01□□□□□ -0.49
LINC00339-211ENST00000641009 CMAHPQ9Y471 501 aa12.01□□□□□ -0.49
LINC00339-211ENST00000641009 LRP5LA4QPB2 252 aa12□□□□□ -0.49
LINC00339-211ENST00000641009 SASH3O75995 380 aa12□□□□□ -0.49
LINC00339-211ENST00000641009 RAB36O95755 333 aa12□□□□□ -0.49
LINC00339-211ENST00000641009 ERCC1P07992 297 aaPredicted RBP12□□□□□ -0.49
LINC00339-211ENST00000641009 ASAH2BP0C7U1 165 aa12□□□□□ -0.49
LINC00339-211ENST00000641009 UMPSP11172 480 aa12□□□□□ -0.49
LINC00339-211ENST00000641009 ZNF23P17027 643 aa12□□□□□ -0.49
LINC00339-211ENST00000641009 TNFRSF1BP20333 461 aa12□□□□□ -0.49
LINC00339-211ENST00000641009 ZP4Q12836 540 aa12□□□□□ -0.49
LINC00339-211ENST00000641009 SF3A3Q12874 501 aaKnown RBP eCLIP12□□□□□ -0.49
LINC00339-211ENST00000641009 RAB39AQ14964 217 aa12□□□□□ -0.49
LINC00339-211ENST00000641009 CCDC80Q76M96 950 aa12□□□□□ -0.49
LINC00339-211ENST00000641009 SKA3Q8IX90 412 aa12□□□□□ -0.49
LINC00339-211ENST00000641009 PHC2Q8IXK0 858 aa12□□□□□ -0.49
LINC00339-211ENST00000641009 FGFBP3Q8TAT2 258 aa12□□□□□ -0.49
LINC00339-211ENST00000641009 NEU4Q8WWR8 484 aaPredicted RBP12□□□□□ -0.49
LINC00339-211ENST00000641009 ZNF566Q969W8 418 aa12□□□□□ -0.49
LINC00339-211ENST00000641009 MRPL24Q96A35 216 aaKnown RBP12□□□□□ -0.49
LINC00339-211ENST00000641009 MPP4Q96JB8 637 aa12□□□□□ -0.49
LINC00339-211ENST00000641009 PRSS27Q9BQR3 290 aa12□□□□□ -0.49
LINC00339-211ENST00000641009 MRPL37Q9BZE1 423 aaKnown RBP12□□□□□ -0.49
LINC00339-211ENST00000641009 MEPEQ9NQ76 525 aaPredicted RBP12□□□□□ -0.49
LINC00339-211ENST00000641009 ARGLU1Q9NWB6 273 aaPredicted RBP12□□□□□ -0.49
LINC00339-211ENST00000641009 LPAR3Q9UBY5 353 aa12□□□□□ -0.49
LINC00339-211ENST00000641009 ZNF229Q9UJW7 825 aa12□□□□□ -0.49
LINC00339-211ENST00000641009 KCNS2Q9ULS6 477 aa12□□□□□ -0.49
LINC00339-211ENST00000641009 SH3GLB1Q9Y371 365 aa12□□□□□ -0.49
LINC00339-211ENST00000641009 LYNX1G3V0Z9 82 aa11.99□□□□□ -0.49
LINC00339-211ENST00000641009 FXYD1O00168 92 aa11.99□□□□□ -0.49
LINC00339-211ENST00000641009 PHF1O43189 567 aaPredicted RBP11.99□□□□□ -0.49
LINC00339-211ENST00000641009 SHOX2O60902 331 aaPredicted RBP11.99□□□□□ -0.49
LINC00339-211ENST00000641009 UBL3O95164 117 aa11.99□□□□□ -0.49
LINC00339-211ENST00000641009 HIST1H2ABP04908 130 aa11.99□□□□□ -0.49
LINC00339-211ENST00000641009 LYNX1P0DP58 116 aa11.99□□□□□ -0.49
LINC00339-211ENST00000641009 CYLC2Q14093 348 aaPredicted RBP11.99□□□□□ -0.49
LINC00339-211ENST00000641009 LRFN4Q6PJG9 635 aa11.99□□□□□ -0.49
LINC00339-211ENST00000641009 HIST3H2AQ7L7L0 130 aa11.99□□□□□ -0.49
LINC00339-211ENST00000641009 PIWIL3Q7Z3Z3 882 aaKnown RBP11.99□□□□□ -0.49
LINC00339-211ENST00000641009 CARM1Q86X55 608 aa11.99□□□□□ -0.49
LINC00339-211ENST00000641009 CALHM3Q86XJ0 350 aa11.99□□□□□ -0.49
LINC00339-211ENST00000641009 ZNF584Q8IVC4 421 aa11.99□□□□□ -0.49
LINC00339-211ENST00000641009 SLC22A24Q8N4F4 322 aa11.99□□□□□ -0.49
LINC00339-211ENST00000641009 ZNF540Q8NDQ6 660 aa11.99□□□□□ -0.49
LINC00339-211ENST00000641009 RASSF5Q8WWW0 418 aa11.99□□□□□ -0.49
LINC00339-211ENST00000641009 HIST1H2ACQ93077 130 aa11.99□□□□□ -0.49
LINC00339-211ENST00000641009 LRRC58Q96CX6 371 aa11.99□□□□□ -0.49
LINC00339-211ENST00000641009 SLC25A44Q96H78 314 aaPredicted RBP11.99□□□□□ -0.49
LINC00339-211ENST00000641009 SYT3Q9BQG1 590 aa11.99□□□□□ -0.49
LINC00339-211ENST00000641009 SLC19A3Q9BZV2 496 aa11.99□□□□□ -0.49
LINC00339-211ENST00000641009 FZR1Q9UM11 496 aa11.99□□□□□ -0.49
LINC00339-211ENST00000641009 SPEF1Q9Y4P9 236 aa11.99□□□□□ -0.49
LINC00339-211ENST00000641009 BLOC1S5-TXNDC5H3BN57 136 aa11.98□□□□□ -0.49
LINC00339-211ENST00000641009 TGFAP01135 160 aa11.98□□□□□ -0.49
LINC00339-211ENST00000641009 PGA4P0DJD7 388 aa11.98□□□□□ -0.49
LINC00339-211ENST00000641009 PGA3P0DJD8 388 aa11.98□□□□□ -0.49
LINC00339-211ENST00000641009 GIFP27352 417 aa11.98□□□□□ -0.49
LINC00339-211ENST00000641009 IL2RGP31785 369 aa11.98□□□□□ -0.49
LINC00339-211ENST00000641009 MMEL1Q495T6 779 aa11.98□□□□□ -0.49
LINC00339-211ENST00000641009 FAM120AOSQ5T036 256 aa11.98□□□□□ -0.49
LINC00339-211ENST00000641009 GKAP1Q5VSY0 366 aaPredicted RBP11.98□□□□□ -0.49
LINC00339-211ENST00000641009 REP15Q6BDI9 236 aa11.98□□□□□ -0.49
LINC00339-211ENST00000641009 NANOGNBQ7Z5D8 188 aa11.98□□□□□ -0.49
LINC00339-211ENST00000641009 LRP11Q86VZ4 500 aa11.98□□□□□ -0.49
LINC00339-211ENST00000641009 NKAIN4Q8IVV8 208 aa11.98□□□□□ -0.49
LINC00339-211ENST00000641009 ZNF786Q8N393 782 aa11.98□□□□□ -0.49
LINC00339-211ENST00000641009 PFN4Q8NHR9 129 aa11.98□□□□□ -0.49
LINC00339-211ENST00000641009 UBASH3BQ8TF42 649 aa11.98□□□□□ -0.49
LINC00339-211ENST00000641009 SH3GL3Q99963 347 aa11.98□□□□□ -0.49
LINC00339-211ENST00000641009 ECSITQ9BQ95 431 aa11.98□□□□□ -0.49
LINC00339-211ENST00000641009 REPIN1Q9BWE0 567 aaKnown RBP11.98□□□□□ -0.49
LINC00339-211ENST00000641009 DENND2DQ9H6A0 471 aaPredicted RBP11.98□□□□□ -0.49
Retrieved 100 of 20,778 RNA–protein pairs in 31.6 ms