RNA–Protein interactions for RNA: ENST00000640313.1

VPS35-212, Transcript of VPS35, retromer complex component, humanhuman

TSL 5 BASIC

Gene VPS35, Length 141 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-212ENST00000640313 SH3YL1Q96HL8 342 aaPredicted RBP0.13□□□□□ -2.39
VPS35-212ENST00000640313 SEC22AQ96IW7 307 aa0.13□□□□□ -2.39
VPS35-212ENST00000640313 C7orf34Q96L11 122 aa0.13□□□□□ -2.39
VPS35-212ENST00000640313 BMFQ96LC9 184 aa0.13□□□□□ -2.39
VPS35-212ENST00000640313 LINC00477Q96M19 166 aa0.13□□□□□ -2.39
VPS35-212ENST00000640313 ZNF681Q96N22 645 aa0.13□□□□□ -2.39
VPS35-212ENST00000640313 TGM7Q96PF1 710 aa0.13□□□□□ -2.39
VPS35-212ENST00000640313 MS4A4EQ96PG1 132 aa0.13□□□□□ -2.39
VPS35-212ENST00000640313 TSSK3Q96PN8 268 aa0.13□□□□□ -2.39
VPS35-212ENST00000640313 SLC38A2Q96QD8 506 aa0.13□□□□□ -2.39
VPS35-212ENST00000640313 PSKH2Q96QS6 385 aa0.13□□□□□ -2.39
VPS35-212ENST00000640313 OMDQ99983 421 aa0.13□□□□□ -2.39
VPS35-212ENST00000640313 TUBGCP2Q9BSJ2 902 aa0.13□□□□□ -2.39
VPS35-212ENST00000640313 TEKT3Q9BXF9 490 aa0.13□□□□□ -2.39
VPS35-212ENST00000640313 GABARAPL3Q9BY60 117 aa0.13□□□□□ -2.39
VPS35-212ENST00000640313 RAB34Q9BZG1 259 aa0.13□□□□□ -2.39
VPS35-212ENST00000640313 ACTR6Q9GZN1 396 aa0.13□□□□□ -2.39
VPS35-212ENST00000640313 POLR1EQ9GZS1 481 aaKnown RBP0.13□□□□□ -2.39
VPS35-212ENST00000640313 NXF5Q9H1B4 397 aaKnown RBP0.13□□□□□ -2.39
VPS35-212ENST00000640313 C1orf21Q9H246 121 aa0.13□□□□□ -2.39
VPS35-212ENST00000640313 NEUROG2Q9H2A3 272 aa0.13□□□□□ -2.39
VPS35-212ENST00000640313 LHX5Q9H2C1 402 aa0.13□□□□□ -2.39
VPS35-212ENST00000640313 LINC00597Q9H2U6 94 aa0.13□□□□□ -2.39
VPS35-212ENST00000640313 LRRN3Q9H3W5 708 aa0.13□□□□□ -2.39
VPS35-212ENST00000640313 CLMPQ9H6B4 373 aa0.13□□□□□ -2.39
VPS35-212ENST00000640313 REEP4Q9H6H4 257 aa0.13□□□□□ -2.39
VPS35-212ENST00000640313 DBNDD1Q9H9R9 158 aa0.13□□□□□ -2.39
VPS35-212ENST00000640313 FN3KRPQ9HA64 309 aa0.13□□□□□ -2.39
VPS35-212ENST00000640313 ZDHHC4Q9NPG8 344 aa0.13□□□□□ -2.39
VPS35-212ENST00000640313 IL26Q9NPH9 171 aa0.13□□□□□ -2.39
VPS35-212ENST00000640313 GLRX2Q9NS18 164 aa0.13□□□□□ -2.39
VPS35-212ENST00000640313 ZNF586Q9NXT0 402 aa0.13□□□□□ -2.39
VPS35-212ENST00000640313 OR12D3Q9UGF7 316 aa0.13□□□□□ -2.39
VPS35-212ENST00000640313 PCYOX1Q9UHG3 505 aa0.13□□□□□ -2.39
VPS35-212ENST00000640313 CD84Q9UIB8 345 aa0.13□□□□□ -2.39
VPS35-212ENST00000640313 LAMP5Q9UJQ1 280 aa0.13□□□□□ -2.39
VPS35-212ENST00000640313 TRAF3IP3Q9Y228 551 aa0.13□□□□□ -2.39
VPS35-212ENST00000640313 TSSC4Q9Y5U2 329 aaPredicted RBP0.13□□□□□ -2.39
VPS35-212ENST00000640313 TMEM14AQ9Y6G1 99 aa0.13□□□□□ -2.39
VPS35-212ENST00000640313 KDRP35968 1356 aa0.13□□□□□ -2.39
VPS35-212ENST00000640313 CEMIPQ8WUJ3 1361 aa0.13□□□□□ -2.39
VPS35-212ENST00000640313 NUP214P35658 2090 aaPredicted RBP0.13□□□□□ -2.39
VPS35-212ENST00000640313 SCN1AP35498 2009 aa0.13□□□□□ -2.39
VPS35-212ENST00000640313 NFASCO94856 1347 aa0.13□□□□□ -2.39
VPS35-212ENST00000640313 FRAS1Q86XX4 4008 aa0.12□□□□□ -2.39
VPS35-212ENST00000640313 IGKV3D-11A0A0A0MRZ8 115 aa0.12□□□□□ -2.39
VPS35-212ENST00000640313 IGLV1-36A0A0B4J1U3 117 aa0.12□□□□□ -2.39
VPS35-212ENST00000640313 TRAV39A0A0B4J263 110 aa0.12□□□□□ -2.39
VPS35-212ENST00000640313 IGHV1OR15-9A0A0B4J2B8 117 aa0.12□□□□□ -2.39
VPS35-212ENST00000640313 A0A1W2PP18 115 aa0.12□□□□□ -2.39
VPS35-212ENST00000640313 PCNX2A6NKB5 2137 aa0.12□□□□□ -2.39
VPS35-212ENST00000640313 OR5B21A6NL26 309 aa0.12□□□□□ -2.39
VPS35-212ENST00000640313 ZNF716A6NP11 495 aa0.12□□□□□ -2.39
VPS35-212ENST00000640313 HIDE1A8MVS5 230 aa0.12□□□□□ -2.39
VPS35-212ENST00000640313 A8MXQ7 604 aa0.12□□□□□ -2.39
VPS35-212ENST00000640313 H0YJW9 148 aa0.12□□□□□ -2.39
VPS35-212ENST00000640313 H3BNH8 94 aa0.12□□□□□ -2.39
VPS35-212ENST00000640313 CCER2I3L3R5 266 aa0.12□□□□□ -2.39
VPS35-212ENST00000640313 SGK1O00141 431 aa0.12□□□□□ -2.39
VPS35-212ENST00000640313 XKRYO14609 159 aa0.12□□□□□ -2.39
VPS35-212ENST00000640313 ARPC3O15145 178 aa0.12□□□□□ -2.39
VPS35-212ENST00000640313 MAPK13O15264 365 aa0.12□□□□□ -2.39
VPS35-212ENST00000640313 RGS16O15492 202 aaPredicted RBP0.12□□□□□ -2.39
VPS35-212ENST00000640313 CLDN3O15551 220 aa0.12□□□□□ -2.39
VPS35-212ENST00000640313 CHST1O43916 411 aa0.12□□□□□ -2.39
VPS35-212ENST00000640313 FCMRO60667 390 aa0.12□□□□□ -2.39
VPS35-212ENST00000640313 SCGB2A1O75556 95 aa0.12□□□□□ -2.39
VPS35-212ENST00000640313 DEDDO75618 318 aa0.12□□□□□ -2.39
VPS35-212ENST00000640313 ATP5LO75964 103 aa0.12□□□□□ -2.39
VPS35-212ENST00000640313 RHOBTB1O94844 696 aa0.12□□□□□ -2.39
VPS35-212ENST00000640313 YIF1AO95070 293 aa0.12□□□□□ -2.39
VPS35-212ENST00000640313 MFN2O95140 757 aa0.12□□□□□ -2.39
VPS35-212ENST00000640313 LRATO95237 230 aa0.12□□□□□ -2.39
VPS35-212ENST00000640313 CD74P04233 296 aa0.12□□□□□ -2.39
VPS35-212ENST00000640313 FGF1P05230 155 aa0.12□□□□□ -2.39
VPS35-212ENST00000640313 BCHEP06276 602 aa0.12□□□□□ -2.39
VPS35-212ENST00000640313 GNAO1P09471 354 aa0.12□□□□□ -2.39
VPS35-212ENST00000640313 CT62P0C5K7 136 aa0.12□□□□□ -2.39
VPS35-212ENST00000640313 NCF1P14598 390 aaPredicted RBP0.12□□□□□ -2.39
VPS35-212ENST00000640313 TNNI3P19429 210 aa0.12□□□□□ -2.39
VPS35-212ENST00000640313 LOXP28300 417 aaPredicted RBP0.12□□□□□ -2.39
VPS35-212ENST00000640313 GCAP28676 217 aa0.12□□□□□ -2.39
VPS35-212ENST00000640313 CCR1P32246 355 aa0.12□□□□□ -2.39
VPS35-212ENST00000640313 FUSP35637 526 aaKnown RBP eCLIP0.12□□□□□ -2.39
VPS35-212ENST00000640313 FDFT1P37268 417 aa0.12□□□□□ -2.39
VPS35-212ENST00000640313 OPRK1P41145 380 aa0.12□□□□□ -2.39
VPS35-212ENST00000640313 AQP2P41181 271 aa0.12□□□□□ -2.39
VPS35-212ENST00000640313 ACAA2P42765 397 aaKnown RBP0.12□□□□□ -2.39
VPS35-212ENST00000640313 GYG1P46976 350 aa0.12□□□□□ -2.39
VPS35-212ENST00000640313 CXCL12P48061 93 aa0.12□□□□□ -2.39
VPS35-212ENST00000640313 PSMD8P48556 350 aa0.12□□□□□ -2.39
VPS35-212ENST00000640313 CSNK1A1P48729 337 aa0.12□□□□□ -2.39
VPS35-212ENST00000640313 SLC11A1P49279 550 aa0.12□□□□□ -2.39
VPS35-212ENST00000640313 PPT1P50897 306 aa0.12□□□□□ -2.39
VPS35-212ENST00000640313 SUB1P53999 127 aaKnown RBP eCLIP0.12□□□□□ -2.39
VPS35-212ENST00000640313 PKNOX1P55347 436 aa0.12□□□□□ -2.39
VPS35-212ENST00000640313 BPIFB3P59826 476 aa0.12□□□□□ -2.39
VPS35-212ENST00000640313 GMFBP60983 142 aa0.12□□□□□ -2.39
VPS35-212ENST00000640313 RAP1AP62834 184 aa0.12□□□□□ -2.39
VPS35-212ENST00000640313 ERVK-25P63136 954 aa0.12□□□□□ -2.39
Retrieved 100 of 20,778 RNA–protein pairs in 67 ms