RNA–Protein interactions for RNA: ENST00000637699.1

CLN3-262, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,228 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-262ENST00000637699 ZNF584Q8IVC4 421 aa16.59■□□□□ 0.25
CLN3-262ENST00000637699 SKA3Q8IX90 412 aa16.59■□□□□ 0.25
CLN3-262ENST00000637699 TEX29Q8N6K0 151 aa16.59■□□□□ 0.25
CLN3-262ENST00000637699 C10orf53Q8N6V4 93 aa16.59■□□□□ 0.25
CLN3-262ENST00000637699 FGFBP3Q8TAT2 258 aa16.59■□□□□ 0.25
CLN3-262ENST00000637699 SLC47A1Q96FL8 570 aa16.59■□□□□ 0.25
CLN3-262ENST00000637699 MOGAT1Q96PD6 335 aa16.59■□□□□ 0.25
CLN3-262ENST00000637699 ZNF665Q9H7R5 613 aa16.59■□□□□ 0.25
CLN3-262ENST00000637699 LRRN3E7EW58 273 aa16.58■□□□□ 0.24
CLN3-262ENST00000637699 CLIC1O00299 241 aa16.58■□□□□ 0.24
CLN3-262ENST00000637699 PLPP2O43688 288 aa16.58■□□□□ 0.24
CLN3-262ENST00000637699 BGLAPP02818 100 aa16.58■□□□□ 0.24
CLN3-262ENST00000637699 SERPINA5P05154 406 aa16.58■□□□□ 0.24
CLN3-262ENST00000637699 FAM157BP0CG42 384 aa16.58■□□□□ 0.24
CLN3-262ENST00000637699 AHCYP23526 432 aa16.58■□□□□ 0.24
CLN3-262ENST00000637699 PRKAR1BP31321 381 aa16.58■□□□□ 0.24
CLN3-262ENST00000637699 SLC18A1P54219 525 aa16.58■□□□□ 0.24
CLN3-262ENST00000637699 PUDPQ08623 228 aa16.58■□□□□ 0.24
CLN3-262ENST00000637699 RGS7BPQ6MZT1 257 aaPredicted RBP16.58■□□□□ 0.24
CLN3-262ENST00000637699 SCAIQ8N9R8 606 aa16.58■□□□□ 0.24
CLN3-262ENST00000637699 OR9I1Q8NGQ6 314 aa16.58■□□□□ 0.24
CLN3-262ENST00000637699 EPYCQ99645 322 aa16.58■□□□□ 0.24
CLN3-262ENST00000637699 OR51B6Q9H340 312 aa16.58■□□□□ 0.24
CLN3-262ENST00000637699 SLC52A3Q9NQ40 469 aa16.58■□□□□ 0.24
CLN3-262ENST00000637699 THAP1Q9NVV9 213 aa16.58■□□□□ 0.24
CLN3-262ENST00000637699 SELENONQ9NZV5 590 aa16.58■□□□□ 0.24
CLN3-262ENST00000637699 ZIM2Q9NZV7 527 aa16.58■□□□□ 0.24
CLN3-262ENST00000637699 FBXL3Q9UKT7 428 aa16.58■□□□□ 0.24
CLN3-262ENST00000637699 WNK2Q9Y3S1 2297 aa16.58■□□□□ 0.24
CLN3-262ENST00000637699 TPST1O60507 370 aa16.57■□□□□ 0.24
CLN3-262ENST00000637699 ETS2P15036 469 aa16.57■□□□□ 0.24
CLN3-262ENST00000637699 ADRA2CP18825 462 aa16.57■□□□□ 0.24
CLN3-262ENST00000637699 LIMS1P48059 325 aa16.57■□□□□ 0.24
CLN3-262ENST00000637699 CSNK1A1P48729 337 aa16.57■□□□□ 0.24
CLN3-262ENST00000637699 POLR2JP52435 117 aaKnown RBP16.57■□□□□ 0.24
CLN3-262ENST00000637699 SELENOVP59797 346 aa16.57■□□□□ 0.24
CLN3-262ENST00000637699 FAM91A1Q658Y4 838 aa16.57■□□□□ 0.24
CLN3-262ENST00000637699 TMEM154Q6P9G4 183 aa16.57■□□□□ 0.24
CLN3-262ENST00000637699 MSANTD1Q6ZTZ1 278 aa16.57■□□□□ 0.24
CLN3-262ENST00000637699 OR6S1Q8NH40 331 aa16.57■□□□□ 0.24
CLN3-262ENST00000637699 NFKBIDQ8NI38 313 aa16.57■□□□□ 0.24
CLN3-262ENST00000637699 GTF2H4Q92759 462 aa16.57■□□□□ 0.24
CLN3-262ENST00000637699 TSPAN32Q96QS1 320 aa16.57■□□□□ 0.24
CLN3-262ENST00000637699 SLC6A7Q99884 636 aa16.57■□□□□ 0.24
CLN3-262ENST00000637699 SUCNR1Q9BXA5 334 aa16.57■□□□□ 0.24
CLN3-262ENST00000637699 TMPRSS13Q9BYE2 586 aa16.57■□□□□ 0.24
CLN3-262ENST00000637699 PAIP1Q9H074 479 aaKnown RBP16.57■□□□□ 0.24
CLN3-262ENST00000637699 RAD21L1Q9H4I0 556 aa16.57■□□□□ 0.24
CLN3-262ENST00000637699 HINT3Q9NQE9 182 aaKnown RBP16.57■□□□□ 0.24
CLN3-262ENST00000637699 MRPL39Q9NYK5 338 aaKnown RBP16.57■□□□□ 0.24
CLN3-262ENST00000637699 GPR160Q9UJ42 338 aa16.57■□□□□ 0.24
CLN3-262ENST00000637699 A0A0G2JMP0 313 aa16.56■□□□□ 0.24
CLN3-262ENST00000637699 A0A0X1KG70 313 aa16.56■□□□□ 0.24
CLN3-262ENST00000637699 C17orf100A8MU93 164 aa16.56■□□□□ 0.24
CLN3-262ENST00000637699 PLPP3O14495 311 aa16.56■□□□□ 0.24
CLN3-262ENST00000637699 BMP2P12643 396 aa16.56■□□□□ 0.24
CLN3-262ENST00000637699 CCL2P13500 99 aa16.56■□□□□ 0.24
CLN3-262ENST00000637699 BIDP55957 195 aa16.56■□□□□ 0.24
CLN3-262ENST00000637699 NCALDP61601 193 aa16.56■□□□□ 0.24
CLN3-262ENST00000637699 OR1Q1Q15612 314 aa16.56■□□□□ 0.24
CLN3-262ENST00000637699 AWAT1Q58HT5 328 aa16.56■□□□□ 0.24
CLN3-262ENST00000637699 SLC2A7Q6PXP3 512 aa16.56■□□□□ 0.24
CLN3-262ENST00000637699 PIWIL3Q7Z3Z3 882 aaKnown RBP16.56■□□□□ 0.24
CLN3-262ENST00000637699 C1QL2Q7Z5L3 287 aa16.56■□□□□ 0.24
CLN3-262ENST00000637699 PXKQ7Z7A4 578 aa16.56■□□□□ 0.24
CLN3-262ENST00000637699 PAQR4Q8N4S7 273 aaPredicted RBP16.56■□□□□ 0.24
CLN3-262ENST00000637699 OR4M2Q8NGB6 313 aa16.56■□□□□ 0.24
CLN3-262ENST00000637699 TMEM27Q9HBJ8 222 aa16.56■□□□□ 0.24
CLN3-262ENST00000637699 SDR39U1Q9NRG7 319 aaPredicted RBP16.56■□□□□ 0.24
CLN3-262ENST00000637699 NKIRAS1Q9NYS0 192 aa16.56■□□□□ 0.24
CLN3-262ENST00000637699 C11orf98E9PRG8 122 aa16.55■□□□□ 0.24
CLN3-262ENST00000637699 BCL10O95999 233 aa16.55■□□□□ 0.24
CLN3-262ENST00000637699 LCKP06239 509 aa16.55■□□□□ 0.24
CLN3-262ENST00000637699 KLF3P57682 345 aaPredicted RBP16.55■□□□□ 0.24
CLN3-262ENST00000637699 ERVS71-1P61550 626 aa16.55■□□□□ 0.24
CLN3-262ENST00000637699 FADDQ13158 208 aa16.55■□□□□ 0.24
CLN3-262ENST00000637699 DHRS4L2Q6PKH6 230 aa16.55■□□□□ 0.24
CLN3-262ENST00000637699 WDR88Q6ZMY6 472 aa16.55■□□□□ 0.24
CLN3-262ENST00000637699 BPIFB2Q8N4F0 458 aa16.55■□□□□ 0.24
CLN3-262ENST00000637699 SLC22A24Q8N4F4 322 aa16.55■□□□□ 0.24
CLN3-262ENST00000637699 SLC30A7Q8NEW0 376 aa16.55■□□□□ 0.24
CLN3-262ENST00000637699 SYNPRQ8TBG9 265 aa16.55■□□□□ 0.24
CLN3-262ENST00000637699 SNX33Q8WV41 574 aa16.55■□□□□ 0.24
CLN3-262ENST00000637699 RAB39BQ96DA2 213 aa16.55■□□□□ 0.24
CLN3-262ENST00000637699 SH3GL3Q99963 347 aa16.55■□□□□ 0.24
CLN3-262ENST00000637699 ESM1Q9NQ30 184 aa16.55■□□□□ 0.24
CLN3-262ENST00000637699 A0A0B4J2E0 115 aa16.54■□□□□ 0.24
CLN3-262ENST00000637699 A0A1B0GX12 115 aa16.54■□□□□ 0.24
CLN3-262ENST00000637699 TPD52L2O43399 206 aaKnown RBP16.54■□□□□ 0.24
CLN3-262ENST00000637699 DEAF1O75398 565 aaPredicted RBP16.54■□□□□ 0.24
CLN3-262ENST00000637699 ADORA3P0DMS8 318 aa16.54■□□□□ 0.24
CLN3-262ENST00000637699 OR8G3PP0DMU2 310 aa16.54■□□□□ 0.24
CLN3-262ENST00000637699 CRYBB2P43320 205 aa16.54■□□□□ 0.24
CLN3-262ENST00000637699 RAD52P43351 418 aa16.54■□□□□ 0.24
CLN3-262ENST00000637699 RGS8P57771 180 aaPredicted RBP16.54■□□□□ 0.24
CLN3-262ENST00000637699 RBBP4Q09028 425 aa16.54■□□□□ 0.24
CLN3-262ENST00000637699 PCGF3Q3KNV8 242 aa16.54■□□□□ 0.24
CLN3-262ENST00000637699 DCAF12L2Q5VW00 463 aa16.54■□□□□ 0.24
CLN3-262ENST00000637699 KRT73Q86Y46 540 aa16.54■□□□□ 0.24
CLN3-262ENST00000637699 ZDHHC22Q8N966 263 aa16.54■□□□□ 0.24
Retrieved 100 of 20,778 RNA–protein pairs in 10.9 ms