RNA–Protein interactions for RNA: ENST00000637100.1

CLN3-255, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,284 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-255ENST00000637100 PMS2P3Q13401 168 aa14.04□□□□□ -0.16
CLN3-255ENST00000637100 OR1Q1Q15612 314 aa14.04□□□□□ -0.16
CLN3-255ENST00000637100 HHATQ5VTY9 493 aa14.04□□□□□ -0.16
CLN3-255ENST00000637100 CARD17Q5XLA6 110 aa14.04□□□□□ -0.16
CLN3-255ENST00000637100 LRFN4Q6PJG9 635 aa14.04□□□□□ -0.16
CLN3-255ENST00000637100 SLC2A7Q6PXP3 512 aa14.04□□□□□ -0.16
CLN3-255ENST00000637100 CROCCP2Q86T23 111 aa14.04□□□□□ -0.16
CLN3-255ENST00000637100 MIER2Q8N344 545 aa14.04□□□□□ -0.16
CLN3-255ENST00000637100 BHLHE22Q8NFJ8 381 aaPredicted RBP14.04□□□□□ -0.16
CLN3-255ENST00000637100 ASPNQ9BXN1 380 aa14.04□□□□□ -0.16
CLN3-255ENST00000637100 TCF7L2Q9NQB0 619 aa14.04□□□□□ -0.16
CLN3-255ENST00000637100 PCDHB10Q9UN67 800 aa14.04□□□□□ -0.16
CLN3-255ENST00000637100 ZNF726A6NNF4 738 aa14.03□□□□□ -0.16
CLN3-255ENST00000637100 C17orf100A8MU93 164 aa14.03□□□□□ -0.16
CLN3-255ENST00000637100 C5orf58C9J3I9 102 aa14.03□□□□□ -0.16
CLN3-255ENST00000637100 FMO6PO60774 539 aa14.03□□□□□ -0.16
CLN3-255ENST00000637100 RAB36O95755 333 aa14.03□□□□□ -0.16
CLN3-255ENST00000637100 PNPP00491 289 aa14.03□□□□□ -0.16
CLN3-255ENST00000637100 KITP10721 976 aa14.03□□□□□ -0.16
CLN3-255ENST00000637100 ANPEPP15144 967 aa14.03□□□□□ -0.16
CLN3-255ENST00000637100 NQO1P15559 274 aaKnown RBP14.03□□□□□ -0.16
CLN3-255ENST00000637100 CDK6Q00534 326 aa14.03□□□□□ -0.16
CLN3-255ENST00000637100 CAMK2DQ13557 499 aa14.03□□□□□ -0.16
CLN3-255ENST00000637100 RAB39AQ14964 217 aa14.03□□□□□ -0.16
CLN3-255ENST00000637100 NRN1LQ496H8 165 aa14.03□□□□□ -0.16
CLN3-255ENST00000637100 NXNQ6DKJ4 435 aa14.03□□□□□ -0.16
CLN3-255ENST00000637100 BLOC1S3Q6QNY0 202 aa14.03□□□□□ -0.16
CLN3-255ENST00000637100 DPPA2Q7Z7J5 298 aa14.03□□□□□ -0.16
CLN3-255ENST00000637100 KRT73Q86Y46 540 aa14.03□□□□□ -0.16
CLN3-255ENST00000637100 SLC22A24Q8N4F4 322 aa14.03□□□□□ -0.16
CLN3-255ENST00000637100 GOLGA6L1Q8N7Z2 621 aa14.03□□□□□ -0.16
CLN3-255ENST00000637100 OR6N1Q8NGY5 312 aa14.03□□□□□ -0.16
CLN3-255ENST00000637100 OR5J2Q8NH18 312 aa14.03□□□□□ -0.16
CLN3-255ENST00000637100 NFKBIDQ8NI38 313 aa14.03□□□□□ -0.16
CLN3-255ENST00000637100 TMPRSS13Q9BYE2 586 aa14.03□□□□□ -0.16
CLN3-255ENST00000637100 TMEM27Q9HBJ8 222 aa14.03□□□□□ -0.16
CLN3-255ENST00000637100 GLTPQ9NZD2 209 aa14.03□□□□□ -0.16
CLN3-255ENST00000637100 SLAMF8Q9P0V8 285 aa14.03□□□□□ -0.16
CLN3-255ENST00000637100 TMEM120BA0PK00 339 aa14.02□□□□□ -0.17
CLN3-255ENST00000637100 SLC22A23A1A5C7 686 aa14.02□□□□□ -0.17
CLN3-255ENST00000637100 PRORSD1PA6NEY8 169 aa14.02□□□□□ -0.17
CLN3-255ENST00000637100 LRRN3E7EW58 273 aa14.02□□□□□ -0.17
CLN3-255ENST00000637100 ENTPD5O75356 428 aa14.02□□□□□ -0.17
CLN3-255ENST00000637100 ERLIN1O75477 346 aa14.02□□□□□ -0.17
CLN3-255ENST00000637100 MFN2O95140 757 aa14.02□□□□□ -0.17
CLN3-255ENST00000637100 LYPD3O95274 346 aa14.02□□□□□ -0.17
CLN3-255ENST00000637100 FSHBP01225 129 aa14.02□□□□□ -0.17
CLN3-255ENST00000637100 NAT2P11245 290 aa14.02□□□□□ -0.17
CLN3-255ENST00000637100 PPIBP23284 216 aaKnown RBP14.02□□□□□ -0.17
CLN3-255ENST00000637100 MAGEB1P43366 347 aa14.02□□□□□ -0.17
CLN3-255ENST00000637100 CSNK1A1P48729 337 aa14.02□□□□□ -0.17
CLN3-255ENST00000637100 CDH12P55289 794 aa14.02□□□□□ -0.17
CLN3-255ENST00000637100 GALK2Q01415 458 aa14.02□□□□□ -0.17
CLN3-255ENST00000637100 HIST3H3Q16695 136 aa14.02□□□□□ -0.17
CLN3-255ENST00000637100 PCGF3Q3KNV8 242 aa14.02□□□□□ -0.17
CLN3-255ENST00000637100 CEP85LQ5SZL2 805 aa14.02□□□□□ -0.17
CLN3-255ENST00000637100 GCNT6Q5T4J0 391 aa14.02□□□□□ -0.17
CLN3-255ENST00000637100 GKAP1Q5VSY0 366 aaPredicted RBP14.02□□□□□ -0.17
CLN3-255ENST00000637100 ACSM5Q6NUN0 579 aa14.02□□□□□ -0.17
CLN3-255ENST00000637100 ZNF613Q6PF04 617 aa14.02□□□□□ -0.17
CLN3-255ENST00000637100 EPGNQ6UW88 154 aa14.02□□□□□ -0.17
CLN3-255ENST00000637100 C1QL2Q7Z5L3 287 aa14.02□□□□□ -0.17
CLN3-255ENST00000637100 PEG10Q86TG7 708 aaKnown RBP14.02□□□□□ -0.17
CLN3-255ENST00000637100 SEPHS2Q99611 448 aa14.02□□□□□ -0.17
CLN3-255ENST00000637100 PAIP2Q9BPZ3 127 aaKnown RBP14.02□□□□□ -0.17
CLN3-255ENST00000637100 RBM4Q9BWF3 364 aaKnown RBP14.02□□□□□ -0.17
CLN3-255ENST00000637100 HINT3Q9NQE9 182 aaKnown RBP14.02□□□□□ -0.17
CLN3-255ENST00000637100 TMEM38BQ9NVV0 291 aa14.02□□□□□ -0.17
CLN3-255ENST00000637100 TAS2R5Q9NYW4 299 aa14.02□□□□□ -0.17
CLN3-255ENST00000637100 VAPAQ9P0L0 249 aa14.02□□□□□ -0.17
CLN3-255ENST00000637100 RAB21Q9UL25 225 aa14.02□□□□□ -0.17
CLN3-255ENST00000637100 TRIM77I1YAP6 450 aa14.01□□□□□ -0.17
CLN3-255ENST00000637100 J3QLI3 93 aa14.01□□□□□ -0.17
CLN3-255ENST00000637100 PPIHO43447 177 aaKnown RBP14.01□□□□□ -0.17
CLN3-255ENST00000637100 MGRN1O60291 552 aa14.01□□□□□ -0.17
CLN3-255ENST00000637100 CLPTM1O96005 669 aa14.01□□□□□ -0.17
CLN3-255ENST00000637100 OR8G3PP0DMU2 310 aa14.01□□□□□ -0.17
CLN3-255ENST00000637100 EPHA1P21709 976 aa14.01□□□□□ -0.17
CLN3-255ENST00000637100 LIMS1P48059 325 aa14.01□□□□□ -0.17
CLN3-255ENST00000637100 ZNF133P52736 654 aaPredicted RBP14.01□□□□□ -0.17
CLN3-255ENST00000637100 BIDP55957 195 aa14.01□□□□□ -0.17
CLN3-255ENST00000637100 PCBP3P57721 371 aaKnown RBP14.01□□□□□ -0.17
CLN3-255ENST00000637100 RGS8P57771 180 aaPredicted RBP14.01□□□□□ -0.17
CLN3-255ENST00000637100 RGS7BPQ6MZT1 257 aaPredicted RBP14.01□□□□□ -0.17
CLN3-255ENST00000637100 PAQR4Q8N4S7 273 aaPredicted RBP14.01□□□□□ -0.17
CLN3-255ENST00000637100 ZNF519Q8TB69 540 aa14.01□□□□□ -0.17
CLN3-255ENST00000637100 MGARPQ8TDB4 240 aa14.01□□□□□ -0.17
CLN3-255ENST00000637100 SLC25A44Q96H78 314 aaPredicted RBP14.01□□□□□ -0.17
CLN3-255ENST00000637100 JMJD8Q96S16 334 aa14.01□□□□□ -0.17
CLN3-255ENST00000637100 ZNF426Q9BUY5 554 aa14.01□□□□□ -0.17
CLN3-255ENST00000637100 PARD6BQ9BYG5 372 aa14.01□□□□□ -0.17
CLN3-255ENST00000637100 C1orf198Q9H425 327 aa14.01□□□□□ -0.17
CLN3-255ENST00000637100 IKZF5Q9H5V7 419 aa14.01□□□□□ -0.17
CLN3-255ENST00000637100 ZNF665Q9H7R5 613 aa14.01□□□□□ -0.17
CLN3-255ENST00000637100 DUSP13Q9UII6 198 aa14.01□□□□□ -0.17
CLN3-255ENST00000637100 DHHO43323 396 aa14□□□□□ -0.17
CLN3-255ENST00000637100 PLPP2O43688 288 aa14□□□□□ -0.17
CLN3-255ENST00000637100 CHP2O43745 196 aa14□□□□□ -0.17
CLN3-255ENST00000637100 IGHV3-13P01766 116 aa14□□□□□ -0.17
CLN3-255ENST00000637100 IGHV2-5P01817 119 aa14□□□□□ -0.17
Retrieved 100 of 20,778 RNA–protein pairs in 24.1 ms