RNA–Protein interactions for RNA: ENST00000631321.1

LINC00540-203, long intergenic non-protein coding RNA 540, humanhuman

TSL 2 BASIC

Gene LINC00540, Length 2,412 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00540-203ENST00000631321 H7C1C5 153 aa11.57□□□□□ -0.56
LINC00540-203ENST00000631321 XRCC3O43542 346 aa11.57□□□□□ -0.56
LINC00540-203ENST00000631321 IFNA7P01567 189 aa11.57□□□□□ -0.56
LINC00540-203ENST00000631321 RAD52P43351 418 aa11.57□□□□□ -0.56
LINC00540-203ENST00000631321 LCN6P62502 163 aa11.57□□□□□ -0.56
LINC00540-203ENST00000631321 LINC00303Q3SY05 128 aa11.57□□□□□ -0.56
LINC00540-203ENST00000631321 FAM209AQ5JX71 171 aa11.57□□□□□ -0.56
LINC00540-203ENST00000631321 CLLU1Q5K131 121 aa11.57□□□□□ -0.56
LINC00540-203ENST00000631321 CCDC28AQ8IWP9 274 aa11.57□□□□□ -0.56
LINC00540-203ENST00000631321 OR8H3Q8N146 312 aa11.57□□□□□ -0.56
LINC00540-203ENST00000631321 PRSS35Q8N3Z0 413 aa11.57□□□□□ -0.56
LINC00540-203ENST00000631321 UXS1Q8NBZ7 420 aa11.57□□□□□ -0.56
LINC00540-203ENST00000631321 C7orf57Q8NEG2 295 aa11.57□□□□□ -0.56
LINC00540-203ENST00000631321 OR6N2Q8NGY6 317 aa11.57□□□□□ -0.56
LINC00540-203ENST00000631321 THEM6Q8WUY1 208 aa11.57□□□□□ -0.56
LINC00540-203ENST00000631321 C4orf45Q96LM5 186 aa11.57□□□□□ -0.56
LINC00540-203ENST00000631321 INTS14Q96SY0 518 aa11.57□□□□□ -0.56
LINC00540-203ENST00000631321 COMMD4Q9H0A8 199 aa11.57□□□□□ -0.56
LINC00540-203ENST00000631321 PIPOXQ9P0Z9 390 aa11.57□□□□□ -0.56
LINC00540-203ENST00000631321 STEAP1Q9UHE8 339 aa11.57□□□□□ -0.56
LINC00540-203ENST00000631321 IKZF2Q9UKS7 526 aa11.57□□□□□ -0.56
LINC00540-203ENST00000631321 EML5Q05BV3 1969 aa11.56□□□□□ -0.56
LINC00540-203ENST00000631321 A0A1B0GTH9 108 aa11.56□□□□□ -0.56
LINC00540-203ENST00000631321 TLCD2A6NGC4 264 aa11.56□□□□□ -0.56
LINC00540-203ENST00000631321 ANXA2P2A6NMY6 339 aa11.56□□□□□ -0.56
LINC00540-203ENST00000631321 SHOXO15266 292 aa11.56□□□□□ -0.56
LINC00540-203ENST00000631321 CRYZL1O95825 349 aa11.56□□□□□ -0.56
LINC00540-203ENST00000631321 HIST1H2ABP04908 130 aa11.56□□□□□ -0.56
LINC00540-203ENST00000631321 ANXA2P07355 339 aaKnown RBP11.56□□□□□ -0.56
LINC00540-203ENST00000631321 GIPP09681 153 aaPredicted RBP11.56□□□□□ -0.56
LINC00540-203ENST00000631321 DCTDP32321 178 aa11.56□□□□□ -0.56
LINC00540-203ENST00000631321 PUDPQ08623 228 aa11.56□□□□□ -0.56
LINC00540-203ENST00000631321 CBFBQ13951 182 aa11.56□□□□□ -0.56
LINC00540-203ENST00000631321 HIST3H2AQ7L7L0 130 aa11.56□□□□□ -0.56
LINC00540-203ENST00000631321 DPY19L4Q7Z388 723 aa11.56□□□□□ -0.56
LINC00540-203ENST00000631321 TMPRSS12Q86WS5 348 aa11.56□□□□□ -0.56
LINC00540-203ENST00000631321 ZNF563Q8TA94 476 aa11.56□□□□□ -0.56
LINC00540-203ENST00000631321 THRSPQ92748 146 aa11.56□□□□□ -0.56
LINC00540-203ENST00000631321 HIST1H2ACQ93077 130 aa11.56□□□□□ -0.56
LINC00540-203ENST00000631321 DCBLD2Q96PD2 775 aa11.56□□□□□ -0.56
LINC00540-203ENST00000631321 DPCDQ9BVM2 203 aaPredicted RBP11.56□□□□□ -0.56
LINC00540-203ENST00000631321 LDHAL6BQ9BYZ2 381 aaPredicted RBP11.56□□□□□ -0.56
LINC00540-203ENST00000631321 CLEC4MQ9H2X3 399 aaPredicted RBP11.56□□□□□ -0.56
LINC00540-203ENST00000631321 PDE7BQ9NP56 450 aa11.56□□□□□ -0.56
LINC00540-203ENST00000631321 IGHV5-51A0A0C4DH38 117 aa11.56□□□□□ -0.56
LINC00540-203ENST00000631321 HSFX4A0A1B0GTS1 333 aaPredicted RBP11.56□□□□□ -0.56
LINC00540-203ENST00000631321 HSFX3A0A1B0GWH4 333 aaPredicted RBP11.56□□□□□ -0.56
LINC00540-203ENST00000631321 TTLL8A6PVC2 850 aa11.56□□□□□ -0.56
LINC00540-203ENST00000631321 ICOSLGO75144 302 aa11.56□□□□□ -0.56
LINC00540-203ENST00000631321 SNAPC5O75971 98 aa11.56□□□□□ -0.56
LINC00540-203ENST00000631321 DDAH2O95865 285 aa11.56□□□□□ -0.56
LINC00540-203ENST00000631321 GLULP15104 373 aa11.56□□□□□ -0.56
LINC00540-203ENST00000631321 KIR3DL2P43630 455 aa11.56□□□□□ -0.56
LINC00540-203ENST00000631321 ARPC4P59998 168 aa11.56□□□□□ -0.56
LINC00540-203ENST00000631321 ZNF117Q03924 483 aa11.56□□□□□ -0.56
LINC00540-203ENST00000631321 EXOSC2Q13868 293 aaKnown RBP11.56□□□□□ -0.56
LINC00540-203ENST00000631321 ELOCQ15369 112 aa11.56□□□□□ -0.56
LINC00540-203ENST00000631321 ZNF626Q68DY1 528 aa11.56□□□□□ -0.56
LINC00540-203ENST00000631321 ZNF227Q86WZ6 799 aa11.56□□□□□ -0.56
LINC00540-203ENST00000631321 C17orf82Q86X59 251 aaPredicted RBP11.56□□□□□ -0.56
LINC00540-203ENST00000631321 TMEM151BQ8IW70 566 aa11.56□□□□□ -0.56
LINC00540-203ENST00000631321 SIX5Q8N196 739 aa11.56□□□□□ -0.56
LINC00540-203ENST00000631321 ZNF676Q8N7Q3 588 aa11.56□□□□□ -0.56
LINC00540-203ENST00000631321 DNAAF1Q8NEP3 725 aa11.56□□□□□ -0.56
LINC00540-203ENST00000631321 OR10AC1Q8NH08 325 aa11.56□□□□□ -0.56
LINC00540-203ENST00000631321 OTOSQ8NHW6 89 aa11.56□□□□□ -0.56
LINC00540-203ENST00000631321 ZNF721Q8TF20 911 aa11.56□□□□□ -0.56
LINC00540-203ENST00000631321 OR1F2PQ96R84 312 aa11.56□□□□□ -0.56
LINC00540-203ENST00000631321 SLC38A3Q99624 504 aa11.56□□□□□ -0.56
LINC00540-203ENST00000631321 SEC22CQ9BRL7 303 aa11.56□□□□□ -0.56
LINC00540-203ENST00000631321 RTN4RQ9BZR6 473 aa11.56□□□□□ -0.56
LINC00540-203ENST00000631321 PNO1Q9NRX1 252 aaKnown RBP11.56□□□□□ -0.56
LINC00540-203ENST00000631321 EPHA6Q9UF33 1036 aa11.56□□□□□ -0.56
LINC00540-203ENST00000631321 PCDHGA5Q9Y5G8 931 aa11.56□□□□□ -0.56
LINC00540-203ENST00000631321 SPTBN5Q9NRC6 3674 aaKnown RBP11.55□□□□□ -0.56
LINC00540-203ENST00000631321 TRAV36DV7A0A075B6V5 113 aa11.55□□□□□ -0.56
LINC00540-203ENST00000631321 A0A1W2PQD3 144 aa11.55□□□□□ -0.56
LINC00540-203ENST00000631321 TMEM150CB9EJG8 249 aa11.55□□□□□ -0.56
LINC00540-203ENST00000631321 H7C417 338 aa11.55□□□□□ -0.56
LINC00540-203ENST00000631321 OR2A4O95047 310 aa11.55□□□□□ -0.56
LINC00540-203ENST00000631321 TMIGD3P0DMS9 266 aaPredicted RBP11.55□□□□□ -0.56
LINC00540-203ENST00000631321 PTHLHP12272 177 aa11.55□□□□□ -0.56
LINC00540-203ENST00000631321 ITPKBP27987 946 aa11.55□□□□□ -0.56
LINC00540-203ENST00000631321 SSTR2P30874 369 aa11.55□□□□□ -0.56
LINC00540-203ENST00000631321 LTBRP36941 435 aa11.55□□□□□ -0.56
LINC00540-203ENST00000631321 GFERP55789 205 aa11.55□□□□□ -0.56
LINC00540-203ENST00000631321 DCAF7P61962 342 aa11.55□□□□□ -0.56
LINC00540-203ENST00000631321 SLC25A25Q6KCM7 469 aa11.55□□□□□ -0.56
LINC00540-203ENST00000631321 ANKRD16Q6P6B7 361 aa11.55□□□□□ -0.56
LINC00540-203ENST00000631321 GLB1L2Q8IW92 636 aa11.55□□□□□ -0.56
LINC00540-203ENST00000631321 TMEM106AQ96A25 262 aa11.55□□□□□ -0.56
LINC00540-203ENST00000631321 RBP7Q96R05 134 aa11.55□□□□□ -0.56
LINC00540-203ENST00000631321 OR2A7Q96R45 310 aa11.55□□□□□ -0.56
LINC00540-203ENST00000631321 ADOQ96SZ5 270 aa11.55□□□□□ -0.56
LINC00540-203ENST00000631321 SYT4Q9H2B2 425 aa11.55□□□□□ -0.56
LINC00540-203ENST00000631321 SOHLH2Q9NX45 425 aa11.55□□□□□ -0.56
LINC00540-203ENST00000631321 GLTPQ9NZD2 209 aa11.55□□□□□ -0.56
LINC00540-203ENST00000631321 MTFP1Q9UDX5 166 aa11.55□□□□□ -0.56
LINC00540-203ENST00000631321 UBQLN2Q9UHD9 624 aa11.55□□□□□ -0.56
LINC00540-203ENST00000631321 OR2M5A3KFT3 312 aa11.55□□□□□ -0.56
Retrieved 100 of 20,778 RNA–protein pairs in 40.1 ms