RNA–Protein interactions for RNA: ENST00000622516.4

CUX1-221, Transcript of cut like homeobox 1, humanhuman

TSL 1 (best) BASIC

Gene CUX1, Length 2,990 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-221ENST00000622516 MDGA2Q7Z553 956 aa9.6□□□□□ -0.87
CUX1-221ENST00000622516 KMT5CQ86Y97 462 aa9.6□□□□□ -0.87
CUX1-221ENST00000622516 WDFY1Q8IWB7 410 aa9.6□□□□□ -0.87
CUX1-221ENST00000622516 LIPHQ8WWY8 451 aa9.6□□□□□ -0.87
CUX1-221ENST00000622516 UPRTQ96BW1 309 aa9.6□□□□□ -0.87
CUX1-221ENST00000622516 FRMD6Q96NE9 622 aa9.6□□□□□ -0.87
CUX1-221ENST00000622516 GFI1Q99684 422 aa9.6□□□□□ -0.87
CUX1-221ENST00000622516 BOLA1Q9Y3E2 137 aa9.6□□□□□ -0.87
CUX1-221ENST00000622516 ADAMTS20P59510 1910 aa9.59□□□□□ -0.87
CUX1-221ENST00000622516 TMEM200CA6NKL6 621 aa9.59□□□□□ -0.87
CUX1-221ENST00000622516 XKRYO14609 159 aa9.59□□□□□ -0.87
CUX1-221ENST00000622516 ADAM10O14672 748 aa9.59□□□□□ -0.87
CUX1-221ENST00000622516 KRT8P05787 483 aa9.59□□□□□ -0.87
CUX1-221ENST00000622516 PTHLHP12272 177 aa9.59□□□□□ -0.87
CUX1-221ENST00000622516 PRKACBP22694 351 aa9.59□□□□□ -0.87
CUX1-221ENST00000622516 CFL1P23528 166 aaKnown RBP9.59□□□□□ -0.87
CUX1-221ENST00000622516 RCVRNP35243 200 aa9.59□□□□□ -0.87
CUX1-221ENST00000622516 PITPNBP48739 271 aa9.59□□□□□ -0.87
CUX1-221ENST00000622516 AGFG1P52594 562 aaKnown RBP9.59□□□□□ -0.87
CUX1-221ENST00000622516 DCDP81605 110 aaKnown RBP9.59□□□□□ -0.87
CUX1-221ENST00000622516 C19orf57Q0VDD7 668 aa9.59□□□□□ -0.87
CUX1-221ENST00000622516 TRAM1Q15629 374 aa9.59□□□□□ -0.87
CUX1-221ENST00000622516 TATDN3Q17R31 274 aa9.59□□□□□ -0.87
CUX1-221ENST00000622516 ZNF544Q6NX49 715 aa9.59□□□□□ -0.87
CUX1-221ENST00000622516 SLC16A9Q7RTY1 509 aa9.59□□□□□ -0.87
CUX1-221ENST00000622516 TPRA1Q86W33 373 aa9.59□□□□□ -0.87
CUX1-221ENST00000622516 CARFQ8N187 725 aa9.59□□□□□ -0.87
CUX1-221ENST00000622516 GALNT6Q8NCL4 622 aa9.59□□□□□ -0.87
CUX1-221ENST00000622516 CAPSLQ8WWF8 208 aa9.59□□□□□ -0.87
CUX1-221ENST00000622516 ACOT12Q8WYK0 555 aa9.59□□□□□ -0.87
CUX1-221ENST00000622516 KIAA1143Q96AT1 154 aaPredicted RBP9.59□□□□□ -0.87
CUX1-221ENST00000622516 LRFN5Q96NI6 719 aa9.59□□□□□ -0.87
CUX1-221ENST00000622516 B3GNT4Q9C0J1 378 aa9.59□□□□□ -0.87
CUX1-221ENST00000622516 RANGRFQ9HD47 186 aaPredicted RBP9.59□□□□□ -0.87
CUX1-221ENST00000622516 MRPL15Q9P015 296 aaKnown RBP9.59□□□□□ -0.87
CUX1-221ENST00000622516 ADAM30Q9UKF2 790 aa9.59□□□□□ -0.87
CUX1-221ENST00000622516 PILRBQ9UKJ0 227 aa9.59□□□□□ -0.87
CUX1-221ENST00000622516 SRPK3Q9UPE1 567 aa9.59□□□□□ -0.87
CUX1-221ENST00000622516 PHF3Q92576 2039 aaKnown RBP9.59□□□□□ -0.87
CUX1-221ENST00000622516 EIF4E2O60573 245 aaKnown RBP9.59□□□□□ -0.87
CUX1-221ENST00000622516 UPK3AO75631 287 aa9.59□□□□□ -0.87
CUX1-221ENST00000622516 OR6A2O95222 327 aa9.59□□□□□ -0.87
CUX1-221ENST00000622516 RENP00797 406 aa9.59□□□□□ -0.87
CUX1-221ENST00000622516 CELA2AP08217 269 aa9.59□□□□□ -0.87
CUX1-221ENST00000622516 UCHL1P09936 223 aa9.59□□□□□ -0.87
CUX1-221ENST00000622516 PRKAR1AP10644 381 aa9.59□□□□□ -0.87
CUX1-221ENST00000622516 CTLA4P16410 223 aa9.59□□□□□ -0.87
CUX1-221ENST00000622516 ACY1Q03154 408 aa9.59□□□□□ -0.87
CUX1-221ENST00000622516 PMS2CLQ68D20 193 aa9.59□□□□□ -0.87
CUX1-221ENST00000622516 TRILQ7L0X0 811 aa9.59□□□□□ -0.87
CUX1-221ENST00000622516 MAMDC2Q7Z304 686 aaPredicted RBP9.59□□□□□ -0.87
CUX1-221ENST00000622516 NFAM1Q8NET5 270 aaPredicted RBP9.59□□□□□ -0.87
CUX1-221ENST00000622516 OR2T4Q8NH00 348 aa9.59□□□□□ -0.87
CUX1-221ENST00000622516 LGALS14Q8TCE9 139 aa9.59□□□□□ -0.87
CUX1-221ENST00000622516 TTYH2Q9BSA4 534 aa9.59□□□□□ -0.87
CUX1-221ENST00000622516 CRB3Q9BUF7 120 aa9.59□□□□□ -0.87
CUX1-221ENST00000622516 NEK6Q9HC98 313 aa9.59□□□□□ -0.87
CUX1-221ENST00000622516 RBFOX1Q9NWB1 397 aaKnown RBP9.59□□□□□ -0.87
CUX1-221ENST00000622516 ANKRD10Q9NXR5 420 aa9.59□□□□□ -0.87
CUX1-221ENST00000622516 SLCO1C1Q9NYB5 712 aa9.59□□□□□ -0.87
CUX1-221ENST00000622516 OR6C70A6NIJ9 312 aa9.58□□□□□ -0.88
CUX1-221ENST00000622516 ZNF593O00488 134 aaPredicted RBP9.58□□□□□ -0.88
CUX1-221ENST00000622516 SEC14L5O43304 696 aa9.58□□□□□ -0.88
CUX1-221ENST00000622516 ARL6IP5O75915 188 aa9.58□□□□□ -0.88
CUX1-221ENST00000622516 OR2J2O76002 312 aa9.58□□□□□ -0.88
CUX1-221ENST00000622516 WNT11O96014 354 aa9.58□□□□□ -0.88
CUX1-221ENST00000622516 SERPINA3P01011 423 aa9.58□□□□□ -0.88
CUX1-221ENST00000622516 ZNF28P17035 718 aa9.58□□□□□ -0.88
CUX1-221ENST00000622516 CD53P19397 219 aa9.58□□□□□ -0.88
CUX1-221ENST00000622516 NPR2P20594 1047 aa9.58□□□□□ -0.88
CUX1-221ENST00000622516 POLR2HP52434 150 aaKnown RBP9.58□□□□□ -0.88
CUX1-221ENST00000622516 DGCR2P98153 550 aa9.58□□□□□ -0.88
CUX1-221ENST00000622516 INSM1Q01101 510 aaPredicted RBP9.58□□□□□ -0.88
CUX1-221ENST00000622516 FMODQ06828 376 aa9.58□□□□□ -0.88
CUX1-221ENST00000622516 OR7A5Q15622 319 aa9.58□□□□□ -0.88
CUX1-221ENST00000622516 ISXQ2M1V0 245 aa9.58□□□□□ -0.88
CUX1-221ENST00000622516 ZNF684Q5T5D7 378 aa9.58□□□□□ -0.88
CUX1-221ENST00000622516 FAM69AQ5T7M9 428 aa9.58□□□□□ -0.88
CUX1-221ENST00000622516 METAP1DQ6UB28 335 aaPredicted RBP9.58□□□□□ -0.88
CUX1-221ENST00000622516 NSMAFQ92636 917 aa9.58□□□□□ -0.88
CUX1-221ENST00000622516 MAP6Q96JE9 813 aa9.58□□□□□ -0.88
CUX1-221ENST00000622516 ST6GAL2Q96JF0 529 aa9.58□□□□□ -0.88
CUX1-221ENST00000622516 WDR77Q9BQA1 342 aaPredicted RBP9.58□□□□□ -0.88
CUX1-221ENST00000622516 DUSP23Q9BVJ7 150 aa9.58□□□□□ -0.88
CUX1-221ENST00000622516 GTPBP2Q9BX10 602 aaKnown RBP9.58□□□□□ -0.88
CUX1-221ENST00000622516 ABCG5Q9H222 651 aa9.58□□□□□ -0.88
CUX1-221ENST00000622516 KLRF1Q9NZS2 232 aa9.58□□□□□ -0.88
CUX1-221ENST00000622516 ZNF221Q9UK13 617 aa9.58□□□□□ -0.88
CUX1-221ENST00000622516 ZNF281Q9Y2X9 895 aa9.58□□□□□ -0.88
CUX1-221ENST00000622516 FRYQ5TBA9 3013 aa9.58□□□□□ -0.88
CUX1-221ENST00000622516 TECTAO75443 2155 aa9.58□□□□□ -0.88
CUX1-221ENST00000622516 LOC400499M0QZD8 3231 aa9.58□□□□□ -0.88
CUX1-221ENST00000622516 TTC28Q96AY4 2481 aa9.58□□□□□ -0.88
CUX1-221ENST00000622516 A0A1W2PQD3 144 aa9.58□□□□□ -0.88
CUX1-221ENST00000622516 NOTOA8MTQ0 251 aa9.58□□□□□ -0.88
CUX1-221ENST00000622516 A8MVM7 634 aa9.58□□□□□ -0.88
CUX1-221ENST00000622516 ZNF879B4DU55 563 aa9.58□□□□□ -0.88
CUX1-221ENST00000622516 MAS1P04201 325 aa9.58□□□□□ -0.88
CUX1-221ENST00000622516 SPARCP09486 303 aa9.58□□□□□ -0.88
CUX1-221ENST00000622516 DDOSTP39656 456 aa9.58□□□□□ -0.88
Retrieved 100 of 20,778 RNA–protein pairs in 82.7 ms