RNA–Protein interactions for RNA: ENST00000619445.1

UPF3B-204, Transcript of UPF3B, regulator of nonsense mediated mRNA decay, humanhuman

TSL 5 BASIC

Gene UPF3B, Length 1,385 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3B-204ENST00000619445 METTL21CQ5VZV1 264 aa10.28□□□□□ -0.76
UPF3B-204ENST00000619445 KRT80Q6KB66 452 aa10.28□□□□□ -0.76
UPF3B-204ENST00000619445 NHLRC1Q6VVB1 395 aa10.28□□□□□ -0.76
UPF3B-204ENST00000619445 LINC00114Q6XXX2 140 aa10.28□□□□□ -0.76
UPF3B-204ENST00000619445 RFLNBQ8N5W9 214 aa10.28□□□□□ -0.76
UPF3B-204ENST00000619445 TEX29Q8N6K0 151 aa10.28□□□□□ -0.76
UPF3B-204ENST00000619445 SLC26A7Q8TE54 656 aa10.28□□□□□ -0.76
UPF3B-204ENST00000619445 ZNF566Q969W8 418 aa10.28□□□□□ -0.76
UPF3B-204ENST00000619445 SLC25A44Q96H78 314 aaPredicted RBP10.28□□□□□ -0.76
UPF3B-204ENST00000619445 MOGAT1Q96PD6 335 aa10.28□□□□□ -0.76
UPF3B-204ENST00000619445 CGREF1Q99674 301 aa10.28□□□□□ -0.76
UPF3B-204ENST00000619445 SH3GL1Q99961 368 aa10.28□□□□□ -0.76
UPF3B-204ENST00000619445 POLR2J2Q9GZM3 115 aaKnown RBP10.28□□□□□ -0.76
UPF3B-204ENST00000619445 PCDHAC1Q9H158 963 aa10.28□□□□□ -0.76
UPF3B-204ENST00000619445 POLR2J3Q9H1A7 115 aaKnown RBP10.28□□□□□ -0.76
UPF3B-204ENST00000619445 LRMDAQ9H2I8 198 aa10.28□□□□□ -0.76
UPF3B-204ENST00000619445 IKZF5Q9H5V7 419 aa10.28□□□□□ -0.76
UPF3B-204ENST00000619445 ZNF385DQ9H6B1 395 aa10.28□□□□□ -0.76
UPF3B-204ENST00000619445 INTS9Q9NV88 658 aaKnown RBP10.28□□□□□ -0.76
UPF3B-204ENST00000619445 MED29Q9NX70 200 aa10.28□□□□□ -0.76
UPF3B-204ENST00000619445 GLTPQ9NZD2 209 aa10.28□□□□□ -0.76
UPF3B-204ENST00000619445 REV1Q9UBZ9 1251 aa10.28□□□□□ -0.76
UPF3B-204ENST00000619445 HMGB1P1B2RPK0 211 aaPredicted RBP10.27□□□□□ -0.76
UPF3B-204ENST00000619445 M0QX08 132 aa10.27□□□□□ -0.76
UPF3B-204ENST00000619445 RNF13O43567 381 aa10.27□□□□□ -0.76
UPF3B-204ENST00000619445 LILRA1O75019 489 aa10.27□□□□□ -0.76
UPF3B-204ENST00000619445 SEC14L2O76054 403 aa10.27□□□□□ -0.76
UPF3B-204ENST00000619445 IGF2P01344 180 aa10.27□□□□□ -0.76
UPF3B-204ENST00000619445 SERPINA5P05154 406 aa10.27□□□□□ -0.76
UPF3B-204ENST00000619445 NR2C1P13056 603 aa10.27□□□□□ -0.76
UPF3B-204ENST00000619445 CD247P20963 164 aa10.27□□□□□ -0.76
UPF3B-204ENST00000619445 GIPRP48546 466 aa10.27□□□□□ -0.76
UPF3B-204ENST00000619445 BIDP55957 195 aa10.27□□□□□ -0.76
UPF3B-204ENST00000619445 TMEM33P57088 247 aa10.27□□□□□ -0.76
UPF3B-204ENST00000619445 NPTX1Q15818 432 aa10.27□□□□□ -0.76
UPF3B-204ENST00000619445 ZNF74Q16587 644 aa10.27□□□□□ -0.76
UPF3B-204ENST00000619445 MOGQ16653 247 aa10.27□□□□□ -0.76
UPF3B-204ENST00000619445 CR1LQ2VPA4 569 aa10.27□□□□□ -0.76
UPF3B-204ENST00000619445 PHYHD1Q5SRE7 291 aa10.27□□□□□ -0.76
UPF3B-204ENST00000619445 TMEM53Q6P2H8 277 aa10.27□□□□□ -0.76
UPF3B-204ENST00000619445 SLC35D2Q76EJ3 337 aa10.27□□□□□ -0.76
UPF3B-204ENST00000619445 MYPOPQ86VE0 399 aaPredicted RBP10.27□□□□□ -0.76
UPF3B-204ENST00000619445 COMTD1Q86VU5 262 aa10.27□□□□□ -0.76
UPF3B-204ENST00000619445 PTOV1Q86YD1 416 aa10.27□□□□□ -0.76
UPF3B-204ENST00000619445 CDK20Q8IZL9 346 aa10.27□□□□□ -0.76
UPF3B-204ENST00000619445 C10orf111Q8N326 155 aa10.27□□□□□ -0.76
UPF3B-204ENST00000619445 SMYD1Q8NB12 490 aa10.27□□□□□ -0.76
UPF3B-204ENST00000619445 OR1J2Q8NGS2 313 aa10.27□□□□□ -0.76
UPF3B-204ENST00000619445 ADAMTS16Q8TE57 1224 aa10.27□□□□□ -0.76
UPF3B-204ENST00000619445 C1orf159Q96HA4 380 aa10.27□□□□□ -0.76
UPF3B-204ENST00000619445 MS4A3Q96HJ5 214 aa10.27□□□□□ -0.76
UPF3B-204ENST00000619445 TXNDC15Q96J42 360 aa10.27□□□□□ -0.76
UPF3B-204ENST00000619445 RSPO3Q9BXY4 272 aaPredicted RBP10.27□□□□□ -0.76
UPF3B-204ENST00000619445 SH3PXD2BA1X283 911 aa10.26□□□□□ -0.77
UPF3B-204ENST00000619445 HTR3EA5X5Y0 456 aa10.26□□□□□ -0.77
UPF3B-204ENST00000619445 ZNF503-AS2A6NEH8 195 aa10.26□□□□□ -0.77
UPF3B-204ENST00000619445 B4DSR2 109 aa10.26□□□□□ -0.77
UPF3B-204ENST00000619445 TPST2O60704 377 aa10.26□□□□□ -0.77
UPF3B-204ENST00000619445 IFNA14P01570 189 aa10.26□□□□□ -0.77
UPF3B-204ENST00000619445 IGHG1P01857 330 aa10.26□□□□□ -0.77
UPF3B-204ENST00000619445 TFP02787 698 aa10.26□□□□□ -0.77
UPF3B-204ENST00000619445 ACHEP22303 614 aa10.26□□□□□ -0.77
UPF3B-204ENST00000619445 PCGF2P35227 344 aa10.26□□□□□ -0.77
UPF3B-204ENST00000619445 ZNF84P51523 738 aa10.26□□□□□ -0.77
UPF3B-204ENST00000619445 DVL1P1P54792 670 aaPredicted RBP10.26□□□□□ -0.77
UPF3B-204ENST00000619445 CDH15P55291 814 aa10.26□□□□□ -0.77
UPF3B-204ENST00000619445 PIGFQ07326 219 aa10.26□□□□□ -0.77
UPF3B-204ENST00000619445 CYLC2Q14093 348 aaPredicted RBP10.26□□□□□ -0.77
UPF3B-204ENST00000619445 FXNQ16595 210 aa10.26□□□□□ -0.77
UPF3B-204ENST00000619445 DUSP7Q16829 419 aa10.26□□□□□ -0.77
UPF3B-204ENST00000619445 SLC36A2Q495M3 483 aa10.26□□□□□ -0.77
UPF3B-204ENST00000619445 ENTPD8Q5MY95 495 aa10.26□□□□□ -0.77
UPF3B-204ENST00000619445 UNQ6126/PRO20091Q6UXV3 157 aa10.26□□□□□ -0.77
UPF3B-204ENST00000619445 NANOGNBQ7Z5D8 188 aa10.26□□□□□ -0.77
UPF3B-204ENST00000619445 SLC22A24Q8N4F4 322 aa10.26□□□□□ -0.77
UPF3B-204ENST00000619445 ARIH2OSQ8N7S6 290 aa10.26□□□□□ -0.77
UPF3B-204ENST00000619445 OR6T1Q8NGN1 323 aa10.26□□□□□ -0.77
UPF3B-204ENST00000619445 RDH5Q92781 318 aa10.26□□□□□ -0.77
UPF3B-204ENST00000619445 TMEM54Q969K7 222 aa10.26□□□□□ -0.77
UPF3B-204ENST00000619445 MAGEB18Q96M61 343 aa10.26□□□□□ -0.77
UPF3B-204ENST00000619445 ZNF75AQ96N20 296 aa10.26□□□□□ -0.77
UPF3B-204ENST00000619445 ZNF426Q9BUY5 554 aa10.26□□□□□ -0.77
UPF3B-204ENST00000619445 ZNF416Q9BWM5 594 aa10.26□□□□□ -0.77
UPF3B-204ENST00000619445 MRPL37Q9BZE1 423 aaKnown RBP10.26□□□□□ -0.77
UPF3B-204ENST00000619445 KAT8Q9H7Z6 458 aaKnown RBP10.26□□□□□ -0.77
UPF3B-204ENST00000619445 TMEFF2Q9UIK5 374 aaPredicted RBP10.26□□□□□ -0.77
UPF3B-204ENST00000619445 BAG5Q9UL15 447 aa10.26□□□□□ -0.77
UPF3B-204ENST00000619445 CUBNO60494 3623 aa10.26□□□□□ -0.77
UPF3B-204ENST00000619445 A0A1W2PRG6 482 aa10.26□□□□□ -0.77
UPF3B-204ENST00000619445 GMNCA6NCL1 334 aa10.26□□□□□ -0.77
UPF3B-204ENST00000619445 CPSF4LA6NMK7 179 aaKnown RBP10.26□□□□□ -0.77
UPF3B-204ENST00000619445 C11orf98E9PRG8 122 aa10.26□□□□□ -0.77
UPF3B-204ENST00000619445 M0R3H8 397 aa10.26□□□□□ -0.77
UPF3B-204ENST00000619445 DHHO43323 396 aa10.26□□□□□ -0.77
UPF3B-204ENST00000619445 SERPINI2O75830 405 aa10.26□□□□□ -0.77
UPF3B-204ENST00000619445 SNAP29O95721 258 aa10.26□□□□□ -0.77
UPF3B-204ENST00000619445 CH25HO95992 272 aa10.26□□□□□ -0.77
UPF3B-204ENST00000619445 BCL10O95999 233 aa10.26□□□□□ -0.77
UPF3B-204ENST00000619445 NPPAP01160 153 aa10.26□□□□□ -0.77
UPF3B-204ENST00000619445 MT-ND5P03915 603 aa10.26□□□□□ -0.77
Retrieved 100 of 20,778 RNA–protein pairs in 45.8 ms