RNA–Protein interactions for RNA: ENST00000616154.1

CDX1-202, Transcript of caudal type homeobox 1, humanhuman

TSL 1 (best) BASIC

Gene CDX1, Length 1,343 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDX1-202ENST00000616154 ACOT8O14734 319 aa16.45■□□□□ 0.22
CDX1-202ENST00000616154 TRAF3IP2O43734 574 aaPredicted RBP16.45■□□□□ 0.22
CDX1-202ENST00000616154 IGLV1-44P01699 117 aa16.45■□□□□ 0.22
CDX1-202ENST00000616154 CECR9P0C854 216 aa16.45■□□□□ 0.22
CDX1-202ENST00000616154 HOXB1P14653 301 aaPredicted RBP16.45■□□□□ 0.22
CDX1-202ENST00000616154 GTF2E2P29084 291 aaKnown RBP16.45■□□□□ 0.22
CDX1-202ENST00000616154 GRPRP30550 384 aa16.45■□□□□ 0.22
CDX1-202ENST00000616154 SH3BGRP55822 239 aaPredicted RBP16.45■□□□□ 0.22
CDX1-202ENST00000616154 NAAAQ02083 359 aa16.45■□□□□ 0.22
CDX1-202ENST00000616154 TRIM25Q14258 630 aaKnown RBP16.45■□□□□ 0.22
CDX1-202ENST00000616154 GGTLC2Q14390 218 aa16.45■□□□□ 0.22
CDX1-202ENST00000616154 EFNB3Q15768 340 aa16.45■□□□□ 0.22
CDX1-202ENST00000616154 ADIPOQQ15848 244 aa16.45■□□□□ 0.22
CDX1-202ENST00000616154 ANKRD16Q6P6B7 361 aa16.45■□□□□ 0.22
CDX1-202ENST00000616154 SLC46A3Q7Z3Q1 461 aa16.45■□□□□ 0.22
CDX1-202ENST00000616154 FAM169BQ8N8A8 192 aa16.45■□□□□ 0.22
CDX1-202ENST00000616154 FAM156AQ8NDB6 213 aa16.45■□□□□ 0.22
CDX1-202ENST00000616154 SLC25A36Q96CQ1 311 aa16.45■□□□□ 0.22
CDX1-202ENST00000616154 ASB9Q96DX5 294 aa16.45■□□□□ 0.22
CDX1-202ENST00000616154 ANK2Q01484 3957 aa16.45■□□□□ 0.22
CDX1-202ENST00000616154 LOC390937A0A1W2PQ73 354 aa16.45■□□□□ 0.22
CDX1-202ENST00000616154 RPL36A-HNRNPH2H7BZ11 118 aa16.45■□□□□ 0.22
CDX1-202ENST00000616154 THY1P04216 161 aa16.45■□□□□ 0.22
CDX1-202ENST00000616154 ZNF43P17038 809 aa16.45■□□□□ 0.22
CDX1-202ENST00000616154 IGFBP5P24593 272 aa16.45■□□□□ 0.22
CDX1-202ENST00000616154 TRAP1Q12931 704 aaKnown RBP16.45■□□□□ 0.22
CDX1-202ENST00000616154 FAM166AQ6J272 317 aa16.45■□□□□ 0.22
CDX1-202ENST00000616154 TSPYL5Q86VY4 417 aaPredicted RBP16.45■□□□□ 0.22
CDX1-202ENST00000616154 OR4F15Q8NGB8 312 aa16.45■□□□□ 0.22
CDX1-202ENST00000616154 PLK3Q9H4B4 646 aa16.45■□□□□ 0.22
CDX1-202ENST00000616154 GORASP2Q9H8Y8 452 aa16.45■□□□□ 0.22
CDX1-202ENST00000616154 MRPL39Q9NYK5 338 aaKnown RBP16.45■□□□□ 0.22
CDX1-202ENST00000616154 ACTR3BQ9P1U1 418 aa16.45■□□□□ 0.22
CDX1-202ENST00000616154 MAGEL2Q9UJ55 1249 aa16.45■□□□□ 0.22
CDX1-202ENST00000616154 KCNS2Q9ULS6 477 aa16.45■□□□□ 0.22
CDX1-202ENST00000616154 SNX13Q9Y5W8 968 aa16.45■□□□□ 0.22
CDX1-202ENST00000616154 A0A096LPE4 126 aa16.44■□□□□ 0.22
CDX1-202ENST00000616154 A0A1W2PPZ6 126 aa16.44■□□□□ 0.22
CDX1-202ENST00000616154 MT-ATP6P00846 226 aa16.44■□□□□ 0.22
CDX1-202ENST00000616154 IGKV3-15P01624 115 aa16.44■□□□□ 0.22
CDX1-202ENST00000616154 OR4A8P0C604 315 aa16.44■□□□□ 0.22
CDX1-202ENST00000616154 NQO1P15559 274 aaKnown RBP16.44■□□□□ 0.22
CDX1-202ENST00000616154 PPOXP50336 477 aa16.44■□□□□ 0.22
CDX1-202ENST00000616154 TUBA1BP68363 451 aa16.44■□□□□ 0.22
CDX1-202ENST00000616154 TUBA4AP68366 448 aa16.44■□□□□ 0.22
CDX1-202ENST00000616154 MS4A2Q01362 244 aa16.44■□□□□ 0.22
CDX1-202ENST00000616154 ROR2Q01974 943 aaKnown RBP16.44■□□□□ 0.22
CDX1-202ENST00000616154 ENTPD8Q5MY95 495 aa16.44■□□□□ 0.22
CDX1-202ENST00000616154 WDR88Q6ZMY6 472 aa16.44■□□□□ 0.22
CDX1-202ENST00000616154 TUBA1AQ71U36 451 aa16.44■□□□□ 0.22
CDX1-202ENST00000616154 RBM45Q8IUH3 476 aaKnown RBP16.44■□□□□ 0.22
CDX1-202ENST00000616154 TMEM123Q8N131 208 aa16.44■□□□□ 0.22
CDX1-202ENST00000616154 KDM8Q8N371 416 aa16.44■□□□□ 0.22
CDX1-202ENST00000616154 ARIH2OSQ8N7S6 290 aa16.44■□□□□ 0.22
CDX1-202ENST00000616154 ADAMTS16Q8TE57 1224 aa16.44■□□□□ 0.22
CDX1-202ENST00000616154 MSI2Q96DH6 328 aaKnown RBP16.44■□□□□ 0.22
CDX1-202ENST00000616154 MPP4Q96JB8 637 aa16.44■□□□□ 0.22
CDX1-202ENST00000616154 VRK1Q99986 396 aaPredicted RBP16.44■□□□□ 0.22
CDX1-202ENST00000616154 SLC19A3Q9BZV2 496 aa16.44■□□□□ 0.22
CDX1-202ENST00000616154 SEC61A2Q9H9S3 476 aa16.44■□□□□ 0.22
CDX1-202ENST00000616154 FBXO9Q9UK97 447 aaPredicted RBP16.44■□□□□ 0.22
CDX1-202ENST00000616154 POMPQ9Y244 141 aa16.44■□□□□ 0.22
CDX1-202ENST00000616154 IGHV4-61A0A0C4DH41 118 aa16.43■□□□□ 0.22
CDX1-202ENST00000616154 LOC100289279A0A1B0GTE1 492 aa16.43■□□□□ 0.22
CDX1-202ENST00000616154 TRAPPC13A5PLN9 417 aa16.43■□□□□ 0.22
CDX1-202ENST00000616154 MS4A18H0YCH9 400 aa16.43■□□□□ 0.22
CDX1-202ENST00000616154 CXCR6O00574 342 aa16.43■□□□□ 0.22
CDX1-202ENST00000616154 ARPC2O15144 300 aa16.43■□□□□ 0.22
CDX1-202ENST00000616154 APEHP13798 732 aaKnown RBP16.43■□□□□ 0.22
CDX1-202ENST00000616154 TCN1P20061 433 aaPredicted RBP16.43■□□□□ 0.22
CDX1-202ENST00000616154 CALCRP30988 508 aa16.43■□□□□ 0.22
CDX1-202ENST00000616154 MSX2P35548 267 aaPredicted RBP16.43■□□□□ 0.22
CDX1-202ENST00000616154 CLDN17P56750 224 aa16.43■□□□□ 0.22
CDX1-202ENST00000616154 MS4A18Q3C1V0 323 aa16.43■□□□□ 0.22
CDX1-202ENST00000616154 KRTAP24-1Q3LI83 254 aa16.43■□□□□ 0.22
CDX1-202ENST00000616154 LCN8Q6JVE9 175 aa16.43■□□□□ 0.22
CDX1-202ENST00000616154 NUP37Q8NFH4 326 aa16.43■□□□□ 0.22
CDX1-202ENST00000616154 FOXN4Q96NZ1 517 aa16.43■□□□□ 0.22
CDX1-202ENST00000616154 MOGAT1Q96PD6 335 aa16.43■□□□□ 0.22
CDX1-202ENST00000616154 POLR2J2Q9GZM3 115 aaKnown RBP16.43■□□□□ 0.22
CDX1-202ENST00000616154 POLR2J3Q9H1A7 115 aaKnown RBP16.43■□□□□ 0.22
CDX1-202ENST00000616154 ZNF442Q9H7R0 627 aa16.43■□□□□ 0.22
CDX1-202ENST00000616154 BAG5Q9UL15 447 aa16.43■□□□□ 0.22
CDX1-202ENST00000616154 SLC35F4A4IF30 521 aa16.42■□□□□ 0.22
CDX1-202ENST00000616154 SLC43A1O75387 559 aa16.42■□□□□ 0.22
CDX1-202ENST00000616154 HPRP00739 348 aa16.42■□□□□ 0.22
CDX1-202ENST00000616154 SRD5A1P18405 259 aa16.42■□□□□ 0.22
CDX1-202ENST00000616154 KDELR2P33947 212 aa16.42■□□□□ 0.22
CDX1-202ENST00000616154 IDH3GP51553 393 aaPredicted RBP16.42■□□□□ 0.22
CDX1-202ENST00000616154 ARF1P84077 181 aaKnown RBP16.42■□□□□ 0.22
CDX1-202ENST00000616154 CARTPTQ16568 116 aa16.42■□□□□ 0.22
CDX1-202ENST00000616154 FAM120AOSQ5T036 256 aa16.42■□□□□ 0.22
CDX1-202ENST00000616154 VHLLQ6RSH7 139 aa16.42■□□□□ 0.22
CDX1-202ENST00000616154 ZNF771Q7L3S4 317 aaPredicted RBP16.42■□□□□ 0.22
CDX1-202ENST00000616154 ZNF540Q8NDQ6 660 aa16.42■□□□□ 0.22
CDX1-202ENST00000616154 SLC26A7Q8TE54 656 aa16.42■□□□□ 0.22
CDX1-202ENST00000616154 CCDC124Q96CT7 223 aaKnown RBP16.42■□□□□ 0.22
CDX1-202ENST00000616154 RAB3IPQ96QF0 476 aaPredicted RBP16.42■□□□□ 0.22
CDX1-202ENST00000616154 OR2M2Q96R28 347 aa16.42■□□□□ 0.22
CDX1-202ENST00000616154 ASPNQ9BXN1 380 aa16.42■□□□□ 0.22
Retrieved 100 of 20,778 RNA–protein pairs in 45.4 ms