RNA–Protein interactions for RNA: ENST00000616140.1

CPSF1-212, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CPSF1, Length 4,494 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-212ENST00000616140 OR6M1Q8NGM8 313 aa12.88□□□□□ -0.35
CPSF1-212ENST00000616140 PAPOLGQ9BWT3 736 aaKnown RBP12.88□□□□□ -0.35
CPSF1-212ENST00000616140 C20orf85Q9H1P6 137 aa12.88□□□□□ -0.35
CPSF1-212ENST00000616140 SPNS1Q9H2V7 528 aa12.88□□□□□ -0.35
CPSF1-212ENST00000616140 GLTPQ9NZD2 209 aa12.88□□□□□ -0.35
CPSF1-212ENST00000616140 CGGBP1Q9UFW8 167 aaPredicted RBP12.88□□□□□ -0.35
CPSF1-212ENST00000616140 COL22A1Q8NFW1 1626 aaPredicted RBP12.88□□□□□ -0.35
CPSF1-212ENST00000616140 K7EPK0 472 aa12.88□□□□□ -0.35
CPSF1-212ENST00000616140 TNFRSF10CO14798 259 aa12.88□□□□□ -0.35
CPSF1-212ENST00000616140 SNRNP70P08621 437 aaKnown RBP12.88□□□□□ -0.35
CPSF1-212ENST00000616140 S100A11P31949 105 aa12.88□□□□□ -0.35
CPSF1-212ENST00000616140 TEKQ02763 1124 aa12.88□□□□□ -0.35
CPSF1-212ENST00000616140 IHHQ14623 411 aa12.88□□□□□ -0.35
CPSF1-212ENST00000616140 BCL2A1Q16548 175 aa12.88□□□□□ -0.35
CPSF1-212ENST00000616140 GLYR1Q49A26 553 aaPredicted RBP12.88□□□□□ -0.35
CPSF1-212ENST00000616140 TMEM201Q5SNT2 666 aa12.88□□□□□ -0.35
CPSF1-212ENST00000616140 MANEAQ5SRI9 462 aa12.88□□□□□ -0.35
CPSF1-212ENST00000616140 BHLHA9Q7RTU4 235 aa12.88□□□□□ -0.35
CPSF1-212ENST00000616140 FAM71E2Q8N5Q1 922 aa12.88□□□□□ -0.35
CPSF1-212ENST00000616140 AGBL5Q8NDL9 886 aa12.88□□□□□ -0.35
CPSF1-212ENST00000616140 SLC6A18Q96N87 628 aa12.88□□□□□ -0.35
CPSF1-212ENST00000616140 BCL2L10Q9HD36 194 aa12.88□□□□□ -0.35
CPSF1-212ENST00000616140 ETV7Q9Y603 341 aa12.88□□□□□ -0.35
CPSF1-212ENST00000616140 SIGLEC6O43699 453 aa12.88□□□□□ -0.35
CPSF1-212ENST00000616140 HIST1H1CP16403 213 aaKnown RBP12.88□□□□□ -0.35
CPSF1-212ENST00000616140 PRKACAP17612 351 aa12.88□□□□□ -0.35
CPSF1-212ENST00000616140 MRPL19P49406 292 aaKnown RBP12.88□□□□□ -0.35
CPSF1-212ENST00000616140 CMIPQ8IY22 773 aa12.88□□□□□ -0.35
CPSF1-212ENST00000616140 ADGRF3Q8IZF5 1079 aa12.88□□□□□ -0.35
CPSF1-212ENST00000616140 BBS1Q8NFJ9 593 aa12.88□□□□□ -0.35
CPSF1-212ENST00000616140 OR2A1Q8NGT9 310 aa12.88□□□□□ -0.35
CPSF1-212ENST00000616140 CCL4L1Q8NHW4 92 aa12.88□□□□□ -0.35
CPSF1-212ENST00000616140 HSD17B8Q92506 261 aa12.88□□□□□ -0.35
CPSF1-212ENST00000616140 CNRIP1Q96F85 164 aaPredicted RBP12.88□□□□□ -0.35
CPSF1-212ENST00000616140 TP53TG5Q9Y2B4 290 aa12.88□□□□□ -0.35
CPSF1-212ENST00000616140 MMACHCQ9Y4U1 282 aa12.88□□□□□ -0.35
CPSF1-212ENST00000616140 MED6O75586 246 aa12.88□□□□□ -0.35
CPSF1-212ENST00000616140 DDAH2O95865 285 aa12.88□□□□□ -0.35
CPSF1-212ENST00000616140 CPEP16870 476 aa12.88□□□□□ -0.35
CPSF1-212ENST00000616140 CCR2P41597 374 aa12.88□□□□□ -0.35
CPSF1-212ENST00000616140 RPS27P42677 84 aaKnown RBP12.88□□□□□ -0.35
CPSF1-212ENST00000616140 FABP5Q01469 135 aa12.88□□□□□ -0.35
CPSF1-212ENST00000616140 NR0B2Q15466 257 aa12.88□□□□□ -0.35
CPSF1-212ENST00000616140 DUSP6Q16828 381 aa12.88□□□□□ -0.35
CPSF1-212ENST00000616140 SLC35D3Q5M8T2 416 aa12.88□□□□□ -0.35
CPSF1-212ENST00000616140 Q6ZNB5 142 aa12.88□□□□□ -0.35
CPSF1-212ENST00000616140 ANKRD33Q7Z3H0 272 aa12.88□□□□□ -0.35
CPSF1-212ENST00000616140 SLC22A24Q8N4F4 322 aa12.88□□□□□ -0.35
CPSF1-212ENST00000616140 METTL9Q9H1A3 318 aa12.88□□□□□ -0.35
CPSF1-212ENST00000616140 STEAP1Q9UHE8 339 aa12.88□□□□□ -0.35
CPSF1-212ENST00000616140 MED16Q9Y2X0 877 aa12.88□□□□□ -0.35
CPSF1-212ENST00000616140 SULT1C2O00338 296 aa12.87□□□□□ -0.35
CPSF1-212ENST00000616140 BET1O15155 118 aa12.87□□□□□ -0.35
CPSF1-212ENST00000616140 MRPL33O75394 65 aaKnown RBP12.87□□□□□ -0.35
CPSF1-212ENST00000616140 PDGFAP04085 211 aa12.87□□□□□ -0.35
CPSF1-212ENST00000616140 CD1CP29017 333 aa12.87□□□□□ -0.35
CPSF1-212ENST00000616140 ACSM1Q08AH1 577 aa12.87□□□□□ -0.35
CPSF1-212ENST00000616140 ARHGAP11BQ3KRB8 267 aa12.87□□□□□ -0.35
CPSF1-212ENST00000616140 C1orf140Q5VVS0 124 aa12.87□□□□□ -0.35
CPSF1-212ENST00000616140 RTL6Q6ICC9 239 aa12.87□□□□□ -0.35
CPSF1-212ENST00000616140 AAED1Q7RTV5 226 aa12.87□□□□□ -0.35
CPSF1-212ENST00000616140 DCXRQ7Z4W1 244 aa12.87□□□□□ -0.35
CPSF1-212ENST00000616140 MISPQ8IVT2 679 aa12.87□□□□□ -0.35
CPSF1-212ENST00000616140 OR52I2Q8NH67 350 aa12.87□□□□□ -0.35
CPSF1-212ENST00000616140 ABHD5Q8WTS1 349 aa12.87□□□□□ -0.35
CPSF1-212ENST00000616140 PLEKHA3Q9HB20 300 aa12.87□□□□□ -0.35
CPSF1-212ENST00000616140 DNAJB11Q9UBS4 358 aa12.87□□□□□ -0.35
CPSF1-212ENST00000616140 TMEFF2Q9UIK5 374 aaPredicted RBP12.87□□□□□ -0.35
CPSF1-212ENST00000616140 UPK1AO00322 258 aa12.87□□□□□ -0.35
CPSF1-212ENST00000616140 ADAM23O75077 832 aa12.87□□□□□ -0.35
CPSF1-212ENST00000616140 SNAPINO95295 136 aa12.87□□□□□ -0.35
CPSF1-212ENST00000616140 EN2P19622 333 aaPredicted RBP12.87□□□□□ -0.35
CPSF1-212ENST00000616140 DPP4P27487 766 aa12.87□□□□□ -0.35
CPSF1-212ENST00000616140 PPT1P50897 306 aa12.87□□□□□ -0.35
CPSF1-212ENST00000616140 PCBD1P61457 104 aa12.87□□□□□ -0.35
CPSF1-212ENST00000616140 CD276Q5ZPR3 534 aa12.87□□□□□ -0.35
CPSF1-212ENST00000616140 HEPHL1Q6MZM0 1159 aa12.87□□□□□ -0.35
CPSF1-212ENST00000616140 FBXW12Q6X9E4 464 aa12.87□□□□□ -0.35
CPSF1-212ENST00000616140 SVBPQ8N300 66 aa12.87□□□□□ -0.35
CPSF1-212ENST00000616140 FBXL6Q8N531 539 aa12.87□□□□□ -0.35
CPSF1-212ENST00000616140 EID2Q8N6I1 236 aa12.87□□□□□ -0.35
CPSF1-212ENST00000616140 OR51S1Q8NGJ8 323 aa12.87□□□□□ -0.35
CPSF1-212ENST00000616140 PPP1R35Q8TAP8 253 aa12.87□□□□□ -0.35
CPSF1-212ENST00000616140 CPT1CQ8TCG5 803 aa12.87□□□□□ -0.35
CPSF1-212ENST00000616140 YIPF6Q96EC8 236 aa12.87□□□□□ -0.35
CPSF1-212ENST00000616140 OR6C1Q96RD1 312 aa12.87□□□□□ -0.35
CPSF1-212ENST00000616140 CCNL2Q96S94 520 aaPredicted RBP12.87□□□□□ -0.35
CPSF1-212ENST00000616140 EMC7Q9NPA0 242 aa12.87□□□□□ -0.35
CPSF1-212ENST00000616140 LUZP4Q9P127 313 aa12.87□□□□□ -0.35
CPSF1-212ENST00000616140 PISDQ9UG56 409 aa12.87□□□□□ -0.35
CPSF1-212ENST00000616140 LAMB1P07942 1786 aa12.87□□□□□ -0.35
CPSF1-212ENST00000616140 IFNA4P05014 189 aa12.87□□□□□ -0.35
CPSF1-212ENST00000616140 TRAPPC2P0DI81 140 aa12.87□□□□□ -0.35
CPSF1-212ENST00000616140 TRAPPC2BP0DI82 140 aa12.87□□□□□ -0.35
CPSF1-212ENST00000616140 BTG1P62324 171 aa12.87□□□□□ -0.35
CPSF1-212ENST00000616140 DGCR2P98153 550 aa12.87□□□□□ -0.35
CPSF1-212ENST00000616140 CTF1Q16619 201 aa12.87□□□□□ -0.35
CPSF1-212ENST00000616140 NIPAL3Q6P499 406 aa12.87□□□□□ -0.35
CPSF1-212ENST00000616140 TEX19Q8NA77 164 aa12.87□□□□□ -0.35
CPSF1-212ENST00000616140 SLC25A21Q9BQT8 299 aaPredicted RBP12.87□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 29.9 ms