RNA–Protein interactions for RNA: ENST00000600868.5

UPF1-211, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 3

Gene UPF1, Length 580 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-211ENST00000600868 OR3A2P47893 321 aa12.71□□□□□ -0.37
UPF1-211ENST00000600868 UQCRFS1P47985 274 aa12.71□□□□□ -0.37
UPF1-211ENST00000600868 CDC42P60953 191 aa12.71□□□□□ -0.37
UPF1-211ENST00000600868 EFNB1P98172 346 aa12.71□□□□□ -0.37
UPF1-211ENST00000600868 KHDRBS1Q07666 443 aaKnown RBP eCLIP12.71□□□□□ -0.37
UPF1-211ENST00000600868 CAMK2DQ13557 499 aa12.71□□□□□ -0.37
UPF1-211ENST00000600868 C4orf17Q53FE4 359 aa12.71□□□□□ -0.37
UPF1-211ENST00000600868 SLC35F1Q5T1Q4 408 aa12.71□□□□□ -0.37
UPF1-211ENST00000600868 PTCHD4Q6ZW05 846 aa12.71□□□□□ -0.37
UPF1-211ENST00000600868 C20orf196Q8IYI0 205 aa12.71□□□□□ -0.37
UPF1-211ENST00000600868 CNEP1R1Q8N9A8 125 aa12.71□□□□□ -0.37
UPF1-211ENST00000600868 OR52E2Q8NGJ4 325 aa12.71□□□□□ -0.37
UPF1-211ENST00000600868 OR4K13Q8NH42 304 aa12.71□□□□□ -0.37
UPF1-211ENST00000600868 PRR7Q8TB68 274 aa12.71□□□□□ -0.37
UPF1-211ENST00000600868 RND1Q92730 232 aa12.71□□□□□ -0.37
UPF1-211ENST00000600868 ZNF566Q969W8 418 aa12.71□□□□□ -0.37
UPF1-211ENST00000600868 APH1AQ96BI3 265 aa12.71□□□□□ -0.37
UPF1-211ENST00000600868 STARD4Q96DR4 205 aa12.71□□□□□ -0.37
UPF1-211ENST00000600868 LRR1Q96L50 414 aa12.71□□□□□ -0.37
UPF1-211ENST00000600868 KCNK17Q96T54 332 aa12.71□□□□□ -0.37
UPF1-211ENST00000600868 DDOQ99489 341 aa12.71□□□□□ -0.37
UPF1-211ENST00000600868 ZNF184Q99676 751 aaPredicted RBP12.71□□□□□ -0.37
UPF1-211ENST00000600868 PLSCR4Q9NRQ2 329 aa12.71□□□□□ -0.37
UPF1-211ENST00000600868 TVP23BQ9NYZ1 205 aa12.71□□□□□ -0.37
UPF1-211ENST00000600868 VSX1Q9NZR4 365 aaPredicted RBP12.71□□□□□ -0.37
UPF1-211ENST00000600868 ZNF629Q9UEG4 869 aaPredicted RBP12.71□□□□□ -0.37
UPF1-211ENST00000600868 Q9UFV3 132 aa12.71□□□□□ -0.37
UPF1-211ENST00000600868 FOXD3Q9UJU5 478 aaPredicted RBP12.71□□□□□ -0.37
UPF1-211ENST00000600868 RALYQ9UKM9 306 aaKnown RBP12.71□□□□□ -0.37
UPF1-211ENST00000600868 SMG1Q96Q15 3661 aaKnown RBP12.71□□□□□ -0.38
UPF1-211ENST00000600868 ESPL1Q14674 2120 aa12.7□□□□□ -0.38
UPF1-211ENST00000600868 NBASA2RRP1 2371 aa12.7□□□□□ -0.38
UPF1-211ENST00000600868 PRSS37A4D1T9 235 aa12.7□□□□□ -0.38
UPF1-211ENST00000600868 SLC2A10O95528 541 aa12.7□□□□□ -0.38
UPF1-211ENST00000600868 CGAP01215 116 aa12.7□□□□□ -0.38
UPF1-211ENST00000600868 NR2C1P13056 603 aa12.7□□□□□ -0.38
UPF1-211ENST00000600868 CSNK1A1P48729 337 aa12.7□□□□□ -0.38
UPF1-211ENST00000600868 SIRPAP78324 504 aa12.7□□□□□ -0.38
UPF1-211ENST00000600868 IL18R1Q13478 541 aa12.7□□□□□ -0.38
UPF1-211ENST00000600868 SNAPC1Q16533 368 aa12.7□□□□□ -0.38
UPF1-211ENST00000600868 HIST3H3Q16695 136 aa12.7□□□□□ -0.38
UPF1-211ENST00000600868 CARD17Q5XLA6 110 aa12.7□□□□□ -0.38
UPF1-211ENST00000600868 MTFR2Q6P444 385 aa12.7□□□□□ -0.38
UPF1-211ENST00000600868 BTLAQ7Z6A9 289 aa12.7□□□□□ -0.38
UPF1-211ENST00000600868 FJX1Q86VR8 437 aa12.7□□□□□ -0.38
UPF1-211ENST00000600868 JAZF1Q86VZ6 243 aa12.7□□□□□ -0.38
UPF1-211ENST00000600868 CCDC71Q8IV32 467 aaPredicted RBP12.7□□□□□ -0.38
UPF1-211ENST00000600868 ZNF100Q8IYN0 542 aa12.7□□□□□ -0.38
UPF1-211ENST00000600868 DEPDC4Q8N2C3 294 aa12.7□□□□□ -0.38
UPF1-211ENST00000600868 SLC37A3Q8NCC5 494 aa12.7□□□□□ -0.38
UPF1-211ENST00000600868 NPEPL1Q8NDH3 523 aa12.7□□□□□ -0.38
UPF1-211ENST00000600868 NOXO1Q8NFA2 376 aa12.7□□□□□ -0.38
UPF1-211ENST00000600868 FNDC8Q8TC99 324 aa12.7□□□□□ -0.38
UPF1-211ENST00000600868 TRUB1Q8WWH5 349 aaKnown RBP12.7□□□□□ -0.38
UPF1-211ENST00000600868 TMEM54Q969K7 222 aa12.7□□□□□ -0.38
UPF1-211ENST00000600868 NMD3Q96D46 503 aaKnown RBP12.7□□□□□ -0.38
UPF1-211ENST00000600868 PLEKHA8Q96JA3 519 aa12.7□□□□□ -0.38
UPF1-211ENST00000600868 NMNAT3Q96T66 252 aa12.7□□□□□ -0.38
UPF1-211ENST00000600868 LINC00470Q9BZP3 86 aa12.7□□□□□ -0.38
UPF1-211ENST00000600868 SLCO5A1Q9H2Y9 848 aa12.7□□□□□ -0.38
UPF1-211ENST00000600868 RAB26Q9ULW5 256 aa12.7□□□□□ -0.38
UPF1-211ENST00000600868 ALPK2Q86TB3 2170 aa12.7□□□□□ -0.38
UPF1-211ENST00000600868 SLC22A23A1A5C7 686 aa12.69□□□□□ -0.38
UPF1-211ENST00000600868 CNOT4O95628 575 aaKnown RBP12.69□□□□□ -0.38
UPF1-211ENST00000600868 RENP00797 406 aa12.69□□□□□ -0.38
UPF1-211ENST00000600868 CD8BP10966 210 aa12.69□□□□□ -0.38
UPF1-211ENST00000600868 PCYT1AP49585 367 aa12.69□□□□□ -0.38
UPF1-211ENST00000600868 ZNF133P52736 654 aaPredicted RBP12.69□□□□□ -0.38
UPF1-211ENST00000600868 CLRN1P58418 232 aa12.69□□□□□ -0.38
UPF1-211ENST00000600868 ITGADQ13349 1161 aa12.69□□□□□ -0.38
UPF1-211ENST00000600868 THEM4Q5T1C6 240 aa12.69□□□□□ -0.38
UPF1-211ENST00000600868 C6orf52Q5T4I8 152 aa12.69□□□□□ -0.38
UPF1-211ENST00000600868 ZNF691Q5VV52 312 aa12.69□□□□□ -0.38
UPF1-211ENST00000600868 LEG1Q6P5S2 330 aa12.69□□□□□ -0.38
UPF1-211ENST00000600868 VWA1Q6PCB0 445 aa12.69□□□□□ -0.38
UPF1-211ENST00000600868 TFAP2EQ6VUC0 442 aa12.69□□□□□ -0.38
UPF1-211ENST00000600868 NCCRP1Q6ZVX7 275 aaPredicted RBP12.69□□□□□ -0.38
UPF1-211ENST00000600868 USP51Q70EK9 711 aa12.69□□□□□ -0.38
UPF1-211ENST00000600868 POMGNT2Q8NAT1 580 aa12.69□□□□□ -0.38
UPF1-211ENST00000600868 SYT14Q8NB59 555 aa12.69□□□□□ -0.38
UPF1-211ENST00000600868 SDR9C7Q8NEX9 313 aa12.69□□□□□ -0.38
UPF1-211ENST00000600868 OR8J1Q8NGP2 316 aa12.69□□□□□ -0.38
UPF1-211ENST00000600868 FAM81AQ8TBF8 368 aa12.69□□□□□ -0.38
UPF1-211ENST00000600868 RBP7Q96R05 134 aa12.69□□□□□ -0.38
UPF1-211ENST00000600868 APOL4Q9BPW4 351 aa12.69□□□□□ -0.38
UPF1-211ENST00000600868 FN3KQ9H479 309 aa12.69□□□□□ -0.38
UPF1-211ENST00000600868 C12orf49Q9H741 205 aa12.69□□□□□ -0.38
UPF1-211ENST00000600868 IMPAD1Q9NX62 359 aa12.69□□□□□ -0.38
UPF1-211ENST00000600868 GLTPQ9NZD2 209 aa12.69□□□□□ -0.38
UPF1-211ENST00000600868 PROCRQ9UNN8 238 aa12.69□□□□□ -0.38
UPF1-211ENST00000600868 OR6C68A6NDL8 312 aa12.68□□□□□ -0.38
UPF1-211ENST00000600868 H7C1C5 153 aa12.68□□□□□ -0.38
UPF1-211ENST00000600868 LRRTM2O43300 516 aa12.68□□□□□ -0.38
UPF1-211ENST00000600868 PRKYO43930 277 aa12.68□□□□□ -0.38
UPF1-211ENST00000600868 UPK3AO75631 287 aa12.68□□□□□ -0.38
UPF1-211ENST00000600868 PAICSP22234 425 aaKnown RBP12.68□□□□□ -0.38
UPF1-211ENST00000600868 EDNRAP25101 427 aa12.68□□□□□ -0.38
UPF1-211ENST00000600868 SLC25A1P53007 311 aa12.68□□□□□ -0.38
UPF1-211ENST00000600868 SNRPGP62308 76 aaKnown RBP12.68□□□□□ -0.38
UPF1-211ENST00000600868 LCN6P62502 163 aa12.68□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 34.6 ms