RNA–Protein interactions for RNA: ENST00000599342.5

VRK3-216, Transcript of vaccinia related kinase 3, humanhuman

TSL 3

Gene VRK3, Length 795 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-216ENST00000599342 ZNF14P17017 642 aaPredicted RBP8.46□□□□□ -1.06
VRK3-216ENST00000599342 NR4A1P22736 598 aa8.46□□□□□ -1.06
VRK3-216ENST00000599342 GIFP27352 417 aa8.46□□□□□ -1.06
VRK3-216ENST00000599342 GIPRP48546 466 aa8.46□□□□□ -1.06
VRK3-216ENST00000599342 RAB1AP62820 205 aa8.46□□□□□ -1.06
VRK3-216ENST00000599342 MELKQ14680 651 aa8.46□□□□□ -1.06
VRK3-216ENST00000599342 NPTX1Q15818 432 aa8.46□□□□□ -1.06
VRK3-216ENST00000599342 ZNF74Q16587 644 aa8.46□□□□□ -1.06
VRK3-216ENST00000599342 FAM120AOSQ5T036 256 aa8.46□□□□□ -1.06
VRK3-216ENST00000599342 LINC00114Q6XXX2 140 aa8.46□□□□□ -1.06
VRK3-216ENST00000599342 WDR88Q6ZMY6 472 aa8.46□□□□□ -1.06
VRK3-216ENST00000599342 IL17RELQ6ZVW7 336 aa8.46□□□□□ -1.06
VRK3-216ENST00000599342 PIWIL3Q7Z3Z3 882 aaKnown RBP8.46□□□□□ -1.06
VRK3-216ENST00000599342 NANOGNBQ7Z5D8 188 aa8.46□□□□□ -1.06
VRK3-216ENST00000599342 ZCCHC24Q8N2G6 241 aaKnown RBP8.46□□□□□ -1.06
VRK3-216ENST00000599342 ARIH2OSQ8N7S6 290 aa8.46□□□□□ -1.06
VRK3-216ENST00000599342 OR6X1Q8NH79 312 aa8.46□□□□□ -1.06
VRK3-216ENST00000599342 UBASH3BQ8TF42 649 aa8.46□□□□□ -1.06
VRK3-216ENST00000599342 MRPL24Q96A35 216 aaKnown RBP8.46□□□□□ -1.06
VRK3-216ENST00000599342 MPP4Q96JB8 637 aa8.46□□□□□ -1.06
VRK3-216ENST00000599342 SLC19A3Q9BZV2 496 aa8.46□□□□□ -1.06
VRK3-216ENST00000599342 TPK1Q9H3S4 243 aa8.46□□□□□ -1.06
VRK3-216ENST00000599342 ZNF385DQ9H6B1 395 aa8.46□□□□□ -1.06
VRK3-216ENST00000599342 GLTPQ9NZD2 209 aa8.46□□□□□ -1.06
VRK3-216ENST00000599342 SLC7A8Q9UHI5 535 aa8.46□□□□□ -1.06
VRK3-216ENST00000599342 ZNF229Q9UJW7 825 aa8.46□□□□□ -1.06
VRK3-216ENST00000599342 ALPK2Q86TB3 2170 aa8.46□□□□□ -1.06
VRK3-216ENST00000599342 ARFGEF3Q5TH69 2177 aa8.45□□□□□ -1.06
VRK3-216ENST00000599342 TMEM129A0AVI4 362 aa8.45□□□□□ -1.06
VRK3-216ENST00000599342 LRP5LA4QPB2 252 aa8.45□□□□□ -1.06
VRK3-216ENST00000599342 MCIDASD6RGH6 385 aa8.45□□□□□ -1.06
VRK3-216ENST00000599342 EDF1O60869 148 aaKnown RBP8.45□□□□□ -1.06
VRK3-216ENST00000599342 OR8G3PP0DMU2 310 aa8.45□□□□□ -1.06
VRK3-216ENST00000599342 ZNF35P13682 527 aa8.45□□□□□ -1.06
VRK3-216ENST00000599342 APEX1P27695 318 aaKnown RBP8.45□□□□□ -1.06
VRK3-216ENST00000599342 GLRXP35754 106 aa8.45□□□□□ -1.06
VRK3-216ENST00000599342 EVX1P49640 407 aa8.45□□□□□ -1.06
VRK3-216ENST00000599342 CLRN1P58418 232 aa8.45□□□□□ -1.06
VRK3-216ENST00000599342 TAS2R41P59536 307 aa8.45□□□□□ -1.06
VRK3-216ENST00000599342 ZP4Q12836 540 aa8.45□□□□□ -1.06
VRK3-216ENST00000599342 CYLC2Q14093 348 aaPredicted RBP8.45□□□□□ -1.06
VRK3-216ENST00000599342 RAB39AQ14964 217 aa8.45□□□□□ -1.06
VRK3-216ENST00000599342 VMACQ2NL98 169 aa8.45□□□□□ -1.06
VRK3-216ENST00000599342 MMEL1Q495T6 779 aa8.45□□□□□ -1.06
VRK3-216ENST00000599342 METTL21CQ5VZV1 264 aa8.45□□□□□ -1.06
VRK3-216ENST00000599342 REP15Q6BDI9 236 aa8.45□□□□□ -1.06
VRK3-216ENST00000599342 RBM45Q8IUH3 476 aaKnown RBP8.45□□□□□ -1.06
VRK3-216ENST00000599342 WDFY1Q8IWB7 410 aa8.45□□□□□ -1.06
VRK3-216ENST00000599342 ZNF786Q8N393 782 aa8.45□□□□□ -1.06
VRK3-216ENST00000599342 SLC22A24Q8N4F4 322 aa8.45□□□□□ -1.06
VRK3-216ENST00000599342 OR4D11Q8NGI4 311 aa8.45□□□□□ -1.06
VRK3-216ENST00000599342 TMEM54Q969K7 222 aa8.45□□□□□ -1.06
VRK3-216ENST00000599342 TAMM41Q96BW9 452 aa8.45□□□□□ -1.06
VRK3-216ENST00000599342 SLC25A44Q96H78 314 aaPredicted RBP8.45□□□□□ -1.06
VRK3-216ENST00000599342 SNX18Q96RF0 628 aa8.45□□□□□ -1.06
VRK3-216ENST00000599342 SH3GL1Q99961 368 aa8.45□□□□□ -1.06
VRK3-216ENST00000599342 SYT3Q9BQG1 590 aa8.45□□□□□ -1.06
VRK3-216ENST00000599342 MRPL37Q9BZE1 423 aaKnown RBP8.45□□□□□ -1.06
VRK3-216ENST00000599342 PCDHAC1Q9H158 963 aa8.45□□□□□ -1.06
VRK3-216ENST00000599342 MS4A5Q9H3V2 200 aa8.45□□□□□ -1.06
VRK3-216ENST00000599342 MRGBPQ9NV56 204 aa8.45□□□□□ -1.06
VRK3-216ENST00000599342 TAS2R5Q9NYW4 299 aa8.45□□□□□ -1.06
VRK3-216ENST00000599342 ZNF224Q9NZL3 707 aa8.45□□□□□ -1.06
VRK3-216ENST00000599342 REV1Q9UBZ9 1251 aa8.45□□□□□ -1.06
VRK3-216ENST00000599342 A0A1W2PPW3 197 aa8.44□□□□□ -1.06
VRK3-216ENST00000599342 A0A1W2PRG6 482 aa8.44□□□□□ -1.06
VRK3-216ENST00000599342 BLOC1S5-TXNDC5H3BN57 136 aa8.44□□□□□ -1.06
VRK3-216ENST00000599342 DHHO43323 396 aa8.44□□□□□ -1.06
VRK3-216ENST00000599342 BCL10O95999 233 aa8.44□□□□□ -1.06
VRK3-216ENST00000599342 IFNA14P01570 189 aa8.44□□□□□ -1.06
VRK3-216ENST00000599342 IGHG1P01857 330 aa8.44□□□□□ -1.06
VRK3-216ENST00000599342 THY1P04216 161 aa8.44□□□□□ -1.06
VRK3-216ENST00000599342 SERPINA5P05154 406 aa8.44□□□□□ -1.06
VRK3-216ENST00000599342 TACSTD2P09758 323 aa8.44□□□□□ -1.06
VRK3-216ENST00000599342 ASAH2BP0C7U1 165 aa8.44□□□□□ -1.06
VRK3-216ENST00000599342 PGA4P0DJD7 388 aa8.44□□□□□ -1.06
VRK3-216ENST00000599342 PGA3P0DJD8 388 aa8.44□□□□□ -1.06
VRK3-216ENST00000599342 TROVE2P10155 538 aaKnown RBP eCLIP8.44□□□□□ -1.06
VRK3-216ENST00000599342 THBS2P35442 1172 aa8.44□□□□□ -1.06
VRK3-216ENST00000599342 TMEM53Q6P2H8 277 aa8.44□□□□□ -1.06
VRK3-216ENST00000599342 UGT2A3Q6UWM9 527 aa8.44□□□□□ -1.06
VRK3-216ENST00000599342 NHLRC1Q6VVB1 395 aa8.44□□□□□ -1.06
VRK3-216ENST00000599342 DEF8Q6ZN54 512 aa8.44□□□□□ -1.06
VRK3-216ENST00000599342 CCDC80Q76M96 950 aa8.44□□□□□ -1.06
VRK3-216ENST00000599342 HDDC2Q7Z4H3 204 aa8.44□□□□□ -1.06
VRK3-216ENST00000599342 DPPA2Q7Z7J5 298 aa8.44□□□□□ -1.06
VRK3-216ENST00000599342 CARM1Q86X55 608 aa8.44□□□□□ -1.06
VRK3-216ENST00000599342 SKA3Q8IX90 412 aa8.44□□□□□ -1.06
VRK3-216ENST00000599342 LRRC17Q8N6Y2 441 aa8.44□□□□□ -1.06
VRK3-216ENST00000599342 LINC01356Q8N9X3 169 aa8.44□□□□□ -1.06
VRK3-216ENST00000599342 HPS1Q92902 700 aa8.44□□□□□ -1.06
VRK3-216ENST00000599342 ZNF75AQ96N20 296 aa8.44□□□□□ -1.06
VRK3-216ENST00000599342 ECSITQ9BQ95 431 aa8.44□□□□□ -1.06
VRK3-216ENST00000599342 ZNF426Q9BUY5 554 aa8.44□□□□□ -1.06
VRK3-216ENST00000599342 TMEM120AQ9BXJ8 343 aa8.44□□□□□ -1.06
VRK3-216ENST00000599342 C1orf198Q9H425 327 aa8.44□□□□□ -1.06
VRK3-216ENST00000599342 RNF121Q9H920 327 aa8.44□□□□□ -1.06
VRK3-216ENST00000599342 VIPAS39Q9H9C1 493 aa8.44□□□□□ -1.06
VRK3-216ENST00000599342 TMEM38BQ9NVV0 291 aa8.44□□□□□ -1.06
VRK3-216ENST00000599342 BAG5Q9UL15 447 aa8.44□□□□□ -1.06
Retrieved 100 of 20,778 RNA–protein pairs in 27.2 ms