RNA–Protein interactions for RNA: ENST00000597172.5

TRIM28-208, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 577 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-208ENST00000597172 PNPLA3Q9NST1 481 aa8.38□□□□□ -1.07
TRIM28-208ENST00000597172 TBC1D23Q9NUY8 699 aa8.38□□□□□ -1.07
TRIM28-208ENST00000597172 ZNF226Q9NYT6 803 aa8.38□□□□□ -1.07
TRIM28-208ENST00000597172 KLHL13Q9P2N7 655 aa8.38□□□□□ -1.07
TRIM28-208ENST00000597172 AASSQ9UDR5 926 aa8.38□□□□□ -1.07
TRIM28-208ENST00000597172 ENOPH1Q9UHY7 261 aa8.38□□□□□ -1.07
TRIM28-208ENST00000597172 ZNF346Q9UL40 294 aaKnown RBP8.38□□□□□ -1.07
TRIM28-208ENST00000597172 RASD1Q9Y272 281 aa8.38□□□□□ -1.07
TRIM28-208ENST00000597172 ADAM18Q9Y3Q7 739 aa8.38□□□□□ -1.07
TRIM28-208ENST00000597172 HRNRQ86YZ3 2850 aaPredicted RBP8.37□□□□□ -1.07
TRIM28-208ENST00000597172 ZNF407Q9C0G0 2248 aa8.37□□□□□ -1.07
TRIM28-208ENST00000597172 ZNF716A6NP11 495 aa8.37□□□□□ -1.07
TRIM28-208ENST00000597172 CLCA1A8K7I4 914 aa8.37□□□□□ -1.07
TRIM28-208ENST00000597172 AHRRA9YTQ3 701 aa8.37□□□□□ -1.07
TRIM28-208ENST00000597172 M0R129 80 aa8.37□□□□□ -1.07
TRIM28-208ENST00000597172 BCKDKO14874 412 aa8.37□□□□□ -1.07
TRIM28-208ENST00000597172 ARPC3O15145 178 aa8.37□□□□□ -1.07
TRIM28-208ENST00000597172 SURF4O15260 269 aa8.37□□□□□ -1.07
TRIM28-208ENST00000597172 CYTIPO60759 359 aa8.37□□□□□ -1.07
TRIM28-208ENST00000597172 CTAG2O75638 210 aa8.37□□□□□ -1.07
TRIM28-208ENST00000597172 VAMP5O95183 116 aa8.37□□□□□ -1.07
TRIM28-208ENST00000597172 TXNDC12O95881 172 aa8.37□□□□□ -1.07
TRIM28-208ENST00000597172 TGM6O95932 706 aa8.37□□□□□ -1.07
TRIM28-208ENST00000597172 PLGP00747 810 aaPredicted RBP8.37□□□□□ -1.07
TRIM28-208ENST00000597172 IGHMP01871 453 aa8.37□□□□□ -1.07
TRIM28-208ENST00000597172 APEHP13798 732 aaKnown RBP8.37□□□□□ -1.07
TRIM28-208ENST00000597172 GABRB1P18505 474 aa8.37□□□□□ -1.07
TRIM28-208ENST00000597172 GRK5P34947 590 aa8.37□□□□□ -1.07
TRIM28-208ENST00000597172 PTGS2P35354 604 aa8.37□□□□□ -1.07
TRIM28-208ENST00000597172 RPL4P36578 427 aaKnown RBP8.37□□□□□ -1.07
TRIM28-208ENST00000597172 HSPA13P48723 471 aa8.37□□□□□ -1.07
TRIM28-208ENST00000597172 ISL1P61371 349 aa8.37□□□□□ -1.07
TRIM28-208ENST00000597172 KEAP1Q14145 624 aa8.37□□□□□ -1.07
TRIM28-208ENST00000597172 PON3Q15166 354 aa8.37□□□□□ -1.07
TRIM28-208ENST00000597172 POU4F3Q15319 338 aa8.37□□□□□ -1.07
TRIM28-208ENST00000597172 ACKR1Q16570 336 aa8.37□□□□□ -1.07
TRIM28-208ENST00000597172 PGGHGQ32M88 737 aa8.37□□□□□ -1.07
TRIM28-208ENST00000597172 SLC35F1Q5T1Q4 408 aa8.37□□□□□ -1.07
TRIM28-208ENST00000597172 ZNF691Q5VV52 312 aa8.37□□□□□ -1.07
TRIM28-208ENST00000597172 ABLIM2Q6H8Q1 611 aa8.37□□□□□ -1.07
TRIM28-208ENST00000597172 RTL6Q6ICC9 239 aa8.37□□□□□ -1.07
TRIM28-208ENST00000597172 NCCRP1Q6ZVX7 275 aaPredicted RBP8.37□□□□□ -1.07
TRIM28-208ENST00000597172 CREB3L2Q70SY1 520 aa8.37□□□□□ -1.07
TRIM28-208ENST00000597172 FCRLAQ7L513 359 aa8.37□□□□□ -1.07
TRIM28-208ENST00000597172 PM20D2Q8IYS1 436 aa8.37□□□□□ -1.07
TRIM28-208ENST00000597172 ANKK1Q8NFD2 765 aa8.37□□□□□ -1.07
TRIM28-208ENST00000597172 OR52L1Q8NGH7 329 aa8.37□□□□□ -1.07
TRIM28-208ENST00000597172 FNDC9Q8TBE3 224 aa8.37□□□□□ -1.07
TRIM28-208ENST00000597172 ZNF775Q96BV0 537 aaPredicted RBP8.37□□□□□ -1.07
TRIM28-208ENST00000597172 ZHX1-C8orf76Q96EF9 292 aa8.37□□□□□ -1.07
TRIM28-208ENST00000597172 COX4I2Q96KJ9 171 aa8.37□□□□□ -1.07
TRIM28-208ENST00000597172 Q96M85 177 aa8.37□□□□□ -1.07
TRIM28-208ENST00000597172 ERMAPQ96PL5 475 aaPredicted RBP8.37□□□□□ -1.07
TRIM28-208ENST00000597172 SF3B5Q9BWJ5 86 aaKnown RBP8.37□□□□□ -1.07
TRIM28-208ENST00000597172 TXNIPQ9H3M7 391 aa8.37□□□□□ -1.07
TRIM28-208ENST00000597172 SLC24A3Q9HC58 644 aa8.37□□□□□ -1.07
TRIM28-208ENST00000597172 PAQR5Q9NXK6 330 aaPredicted RBP8.37□□□□□ -1.07
TRIM28-208ENST00000597172 TVP23BQ9NYZ1 205 aa8.37□□□□□ -1.07
TRIM28-208ENST00000597172 CLCF1Q9UBD9 225 aa8.37□□□□□ -1.07
TRIM28-208ENST00000597172 RNF6Q9Y252 685 aa8.37□□□□□ -1.07
TRIM28-208ENST00000597172 ZNF835Q9Y2P0 537 aa8.37□□□□□ -1.07
TRIM28-208ENST00000597172 PCDHGB5Q9Y5G0 923 aa8.37□□□□□ -1.07
TRIM28-208ENST00000597172 GMPPBQ9Y5P6 360 aa8.37□□□□□ -1.07
TRIM28-208ENST00000597172 MPDZO75970 2070 aa8.37□□□□□ -1.07
TRIM28-208ENST00000597172 IGKV3D-15A0A087WSY6 115 aa8.36□□□□□ -1.07
TRIM28-208ENST00000597172 IMPA2O14732 288 aa8.36□□□□□ -1.07
TRIM28-208ENST00000597172 TRAF3IP2O43734 574 aaPredicted RBP8.36□□□□□ -1.07
TRIM28-208ENST00000597172 IDH3BO43837 385 aa8.36□□□□□ -1.07
TRIM28-208ENST00000597172 PRKYO43930 277 aa8.36□□□□□ -1.07
TRIM28-208ENST00000597172 CRLF1O75462 422 aa8.36□□□□□ -1.07
TRIM28-208ENST00000597172 SERPINI2O75830 405 aa8.36□□□□□ -1.07
TRIM28-208ENST00000597172 SYNGR4O95473 234 aa8.36□□□□□ -1.07
TRIM28-208ENST00000597172 HMGN1P05114 100 aa8.36□□□□□ -1.07
TRIM28-208ENST00000597172 IFNGR1P15260 489 aa8.36□□□□□ -1.07
TRIM28-208ENST00000597172 HIST1H1CP16403 213 aaKnown RBP8.36□□□□□ -1.07
TRIM28-208ENST00000597172 MYF6P23409 242 aa8.36□□□□□ -1.07
TRIM28-208ENST00000597172 CDKN2AP42771 156 aaKnown RBP8.36□□□□□ -1.07
TRIM28-208ENST00000597172 RPS6KA3P51812 740 aa8.36□□□□□ -1.07
TRIM28-208ENST00000597172 SLC16A1P53985 500 aa8.36□□□□□ -1.07
TRIM28-208ENST00000597172 RPL27P61353 136 aaKnown RBP8.36□□□□□ -1.07
TRIM28-208ENST00000597172 POU3F1Q03052 451 aaPredicted RBP8.36□□□□□ -1.07
TRIM28-208ENST00000597172 RASGEF1BQ0VAM2 473 aa8.36□□□□□ -1.07
TRIM28-208ENST00000597172 PDK3Q15120 406 aa8.36□□□□□ -1.07
TRIM28-208ENST00000597172 TAF11Q15544 211 aa8.36□□□□□ -1.07
TRIM28-208ENST00000597172 SNAPC1Q16533 368 aa8.36□□□□□ -1.07
TRIM28-208ENST00000597172 DEFB113Q30KQ7 82 aa8.36□□□□□ -1.07
TRIM28-208ENST00000597172 ARMC4Q5T2S8 1044 aa8.36□□□□□ -1.07
TRIM28-208ENST00000597172 LAIR2Q6ISS4 152 aa8.36□□□□□ -1.07
TRIM28-208ENST00000597172 ZNF585AQ6P3V2 769 aa8.36□□□□□ -1.07
TRIM28-208ENST00000597172 PTCHD4Q6ZW05 846 aa8.36□□□□□ -1.07
TRIM28-208ENST00000597172 SLC35D2Q76EJ3 337 aa8.36□□□□□ -1.07
TRIM28-208ENST00000597172 CHMP1BQ7LBR1 199 aa8.36□□□□□ -1.07
TRIM28-208ENST00000597172 GPAT4Q86UL3 456 aa8.36□□□□□ -1.07
TRIM28-208ENST00000597172 UEVLDQ8IX04 471 aa8.36□□□□□ -1.07
TRIM28-208ENST00000597172 ENTHD1Q8IYW4 607 aa8.36□□□□□ -1.07
TRIM28-208ENST00000597172 ARIH2OSQ8N7S6 290 aa8.36□□□□□ -1.07
TRIM28-208ENST00000597172 NPEPL1Q8NDH3 523 aa8.36□□□□□ -1.07
TRIM28-208ENST00000597172 OR9K2Q8NGE7 335 aa8.36□□□□□ -1.07
TRIM28-208ENST00000597172 RHOXF1Q8NHV9 184 aa8.36□□□□□ -1.07
TRIM28-208ENST00000597172 ZNF519Q8TB69 540 aa8.36□□□□□ -1.07
Retrieved 100 of 20,778 RNA–protein pairs in 35.3 ms