RNA–Protein interactions for RNA: ENST00000597136.1

TRIM28-207, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 1,552 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-207ENST00000597136 APCP25054 2843 aa13.28□□□□□ -0.28
TRIM28-207ENST00000597136 VAMP5O95183 116 aa13.28□□□□□ -0.28
TRIM28-207ENST00000597136 HLA-DOBP13765 273 aa13.28□□□□□ -0.28
TRIM28-207ENST00000597136 CTXN1P60606 82 aa13.28□□□□□ -0.28
TRIM28-207ENST00000597136 SLC17A1Q14916 467 aa13.28□□□□□ -0.28
TRIM28-207ENST00000597136 TMEM201Q5SNT2 666 aa13.28□□□□□ -0.28
TRIM28-207ENST00000597136 SLX4IPQ5VYV7 408 aa13.28□□□□□ -0.28
TRIM28-207ENST00000597136 NHLRC1Q6VVB1 395 aa13.28□□□□□ -0.28
TRIM28-207ENST00000597136 GPAT4Q86UL3 456 aa13.28□□□□□ -0.28
TRIM28-207ENST00000597136 LNX2Q8N448 690 aa13.28□□□□□ -0.28
TRIM28-207ENST00000597136 ZIC4Q8N9L1 334 aa13.28□□□□□ -0.28
TRIM28-207ENST00000597136 ANKK1Q8NFD2 765 aa13.28□□□□□ -0.28
TRIM28-207ENST00000597136 OXGR1Q96P68 337 aa13.28□□□□□ -0.28
TRIM28-207ENST00000597136 KLHL9Q9P2J3 617 aa13.28□□□□□ -0.28
TRIM28-207ENST00000597136 RAB26Q9ULW5 256 aa13.28□□□□□ -0.28
TRIM28-207ENST00000597136 EMC9Q9Y3B6 208 aa13.28□□□□□ -0.28
TRIM28-207ENST00000597136 ADAM18Q9Y3Q7 739 aa13.28□□□□□ -0.28
TRIM28-207ENST00000597136 IER3IP1Q9Y5U9 82 aa13.28□□□□□ -0.28
TRIM28-207ENST00000597136 IGKV3D-15A0A087WSY6 115 aa13.27□□□□□ -0.29
TRIM28-207ENST00000597136 PPP1R3DO95685 299 aa13.27□□□□□ -0.29
TRIM28-207ENST00000597136 GNAO1P09471 354 aa13.27□□□□□ -0.29
TRIM28-207ENST00000597136 GGT2P36268 569 aa13.27□□□□□ -0.29
TRIM28-207ENST00000597136 ASCL1P50553 236 aa13.27□□□□□ -0.29
TRIM28-207ENST00000597136 SLC16A1P53985 500 aa13.27□□□□□ -0.29
TRIM28-207ENST00000597136 ERVK-25P63136 954 aa13.27□□□□□ -0.29
TRIM28-207ENST00000597136 MYBPC1Q00872 1141 aa13.27□□□□□ -0.29
TRIM28-207ENST00000597136 PGGHGQ32M88 737 aa13.27□□□□□ -0.29
TRIM28-207ENST00000597136 C12orf73Q69YU5 71 aa13.27□□□□□ -0.29
TRIM28-207ENST00000597136 OR6K3Q8NGY3 331 aa13.27□□□□□ -0.29
TRIM28-207ENST00000597136 ERMAPQ96PL5 475 aaPredicted RBP13.27□□□□□ -0.29
TRIM28-207ENST00000597136 SF3B5Q9BWJ5 86 aaKnown RBP13.27□□□□□ -0.29
TRIM28-207ENST00000597136 PIGMQ9H3S5 423 aa13.27□□□□□ -0.29
TRIM28-207ENST00000597136 PROCRQ9UNN8 238 aa13.27□□□□□ -0.29
TRIM28-207ENST00000597136 BAIAP2Q9UQB8 552 aa13.27□□□□□ -0.29
TRIM28-207ENST00000597136 GMPPBQ9Y5P6 360 aa13.27□□□□□ -0.29
TRIM28-207ENST00000597136 NOX1Q9Y5S8 564 aa13.27□□□□□ -0.29
TRIM28-207ENST00000597136 FLVCR1Q9Y5Y0 555 aa13.27□□□□□ -0.29
TRIM28-207ENST00000597136 SPG11Q96JI7 2443 aa13.26□□□□□ -0.29
TRIM28-207ENST00000597136 A0A1W2PRG6 482 aa13.26□□□□□ -0.29
TRIM28-207ENST00000597136 ZNF724A8MTY0 619 aa13.26□□□□□ -0.29
TRIM28-207ENST00000597136 MSTNO14793 375 aa13.26□□□□□ -0.29
TRIM28-207ENST00000597136 ARPC3O15145 178 aa13.26□□□□□ -0.29
TRIM28-207ENST00000597136 IDH3BO43837 385 aa13.26□□□□□ -0.29
TRIM28-207ENST00000597136 SERPINI2O75830 405 aa13.26□□□□□ -0.29
TRIM28-207ENST00000597136 CLIC3O95833 236 aa13.26□□□□□ -0.29
TRIM28-207ENST00000597136 CD8BP10966 210 aa13.26□□□□□ -0.29
TRIM28-207ENST00000597136 APEHP13798 732 aaKnown RBP13.26□□□□□ -0.29
TRIM28-207ENST00000597136 GRK5P34947 590 aa13.26□□□□□ -0.29
TRIM28-207ENST00000597136 POU3F1Q03052 451 aaPredicted RBP13.26□□□□□ -0.29
TRIM28-207ENST00000597136 FAM27E3Q08E93 113 aa13.26□□□□□ -0.29
TRIM28-207ENST00000597136 KEAP1Q14145 624 aa13.26□□□□□ -0.29
TRIM28-207ENST00000597136 PDK3Q15120 406 aa13.26□□□□□ -0.29
TRIM28-207ENST00000597136 POU4F3Q15319 338 aa13.26□□□□□ -0.29
TRIM28-207ENST00000597136 ACKR1Q16570 336 aa13.26□□□□□ -0.29
TRIM28-207ENST00000597136 FBXL19-AS1Q494R0 122 aa13.26□□□□□ -0.29
TRIM28-207ENST00000597136 USP51Q70EK9 711 aa13.26□□□□□ -0.29
TRIM28-207ENST00000597136 FAM122BQ7Z309 247 aa13.26□□□□□ -0.29
TRIM28-207ENST00000597136 UEVLDQ8IX04 471 aa13.26□□□□□ -0.29
TRIM28-207ENST00000597136 OR9K2Q8NGE7 335 aa13.26□□□□□ -0.29
TRIM28-207ENST00000597136 RBM24Q9BX46 236 aaKnown RBP13.26□□□□□ -0.29
TRIM28-207ENST00000597136 POLDIP3Q9BY77 421 aaKnown RBP13.26□□□□□ -0.29
TRIM28-207ENST00000597136 TXNIPQ9H3M7 391 aa13.26□□□□□ -0.29
TRIM28-207ENST00000597136 GP6Q9HCN6 339 aa13.26□□□□□ -0.29
TRIM28-207ENST00000597136 GALNT8Q9NY28 637 aa13.26□□□□□ -0.29
TRIM28-207ENST00000597136 PRSS50Q9UI38 385 aa13.26□□□□□ -0.29
TRIM28-207ENST00000597136 LRRC42Q9Y546 428 aa13.26□□□□□ -0.29
TRIM28-207ENST00000597136 NPIPB13A6NJU9 1138 aa13.25□□□□□ -0.29
TRIM28-207ENST00000597136 NPIPB4C9JG80 1138 aa13.25□□□□□ -0.29
TRIM28-207ENST00000597136 TRAF3IP2O43734 574 aaPredicted RBP13.25□□□□□ -0.29
TRIM28-207ENST00000597136 TXNDC12O95881 172 aa13.25□□□□□ -0.29
TRIM28-207ENST00000597136 IGHMP01871 453 aa13.25□□□□□ -0.29
TRIM28-207ENST00000597136 HMGN1P05114 100 aa13.25□□□□□ -0.29
TRIM28-207ENST00000597136 IFNGR1P15260 489 aa13.25□□□□□ -0.29
TRIM28-207ENST00000597136 ZNF43P17038 809 aa13.25□□□□□ -0.29
TRIM28-207ENST00000597136 NOS3P29474 1203 aa13.25□□□□□ -0.29
TRIM28-207ENST00000597136 RPS6KA3P51812 740 aa13.25□□□□□ -0.29
TRIM28-207ENST00000597136 CDC42P60953 191 aa13.25□□□□□ -0.29
TRIM28-207ENST00000597136 TOP3AQ13472 1001 aaPredicted RBP13.25□□□□□ -0.29
TRIM28-207ENST00000597136 C1DQ13901 141 aaKnown RBP13.25□□□□□ -0.29
TRIM28-207ENST00000597136 SLC35F1Q5T1Q4 408 aa13.25□□□□□ -0.29
TRIM28-207ENST00000597136 EEF1A1P5Q5VTE0 462 aa13.25□□□□□ -0.29
TRIM28-207ENST00000597136 ZNF691Q5VV52 312 aa13.25□□□□□ -0.29
TRIM28-207ENST00000597136 GPR139Q6DWJ6 353 aa13.25□□□□□ -0.29
TRIM28-207ENST00000597136 CREB3L2Q70SY1 520 aa13.25□□□□□ -0.29
TRIM28-207ENST00000597136 SLC35D2Q76EJ3 337 aa13.25□□□□□ -0.29
TRIM28-207ENST00000597136 RNASE6Q93091 150 aaKnown RBP13.25□□□□□ -0.29
TRIM28-207ENST00000597136 MUS81Q96NY9 551 aa13.25□□□□□ -0.29
TRIM28-207ENST00000597136 ZNF385AQ96PM9 386 aaKnown RBP13.25□□□□□ -0.29
TRIM28-207ENST00000597136 TSPAN32Q96QS1 320 aa13.25□□□□□ -0.29
TRIM28-207ENST00000597136 TEX12Q9BXU0 123 aa13.25□□□□□ -0.29
TRIM28-207ENST00000597136 TVP23BQ9NYZ1 205 aa13.25□□□□□ -0.29
TRIM28-207ENST00000597136 GRHPRQ9UBQ7 328 aa13.25□□□□□ -0.29
TRIM28-207ENST00000597136 ZNF346Q9UL40 294 aaKnown RBP13.25□□□□□ -0.29
TRIM28-207ENST00000597136 M0R129 80 aa13.24□□□□□ -0.29
TRIM28-207ENST00000597136 IMPA2O14732 288 aa13.24□□□□□ -0.29
TRIM28-207ENST00000597136 IGHV3-9P01782 118 aa13.24□□□□□ -0.29
TRIM28-207ENST00000597136 IGFBP2P18065 325 aa13.24□□□□□ -0.29
TRIM28-207ENST00000597136 SDHAP31040 664 aa13.24□□□□□ -0.29
TRIM28-207ENST00000597136 RPL27P61353 136 aaKnown RBP13.24□□□□□ -0.29
TRIM28-207ENST00000597136 IL18R1Q13478 541 aa13.24□□□□□ -0.29
Retrieved 100 of 20,778 RNA–protein pairs in 27.3 ms