RNA–Protein interactions for RNA: ENST00000596549.5

LIG1-212, Transcript of DNA ligase 1, humanhuman

TSL 4

Gene LIG1, Length 580 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-212ENST00000596549 ANKS4BQ8N8V4 417 aa11.29□□□□□ -0.6
LIG1-212ENST00000596549 FGFBP3Q8TAT2 258 aa11.29□□□□□ -0.6
LIG1-212ENST00000596549 FAM168AQ92567 244 aa11.29□□□□□ -0.6
LIG1-212ENST00000596549 MED4Q9NPJ6 270 aa11.29□□□□□ -0.6
LIG1-212ENST00000596549 B3GAT2Q9NPZ5 323 aa11.29□□□□□ -0.6
LIG1-212ENST00000596549 GID8Q9NWU2 228 aa11.29□□□□□ -0.6
LIG1-212ENST00000596549 A4GNTQ9UNA3 340 aa11.29□□□□□ -0.6
LIG1-212ENST00000596549 PMF1-BGLAPU3KQ54 211 aa11.29□□□□□ -0.6
LIG1-212ENST00000596549 ABCA1O95477 2261 aa11.28□□□□□ -0.6
LIG1-212ENST00000596549 ELOVL7A1L3X0 281 aa11.28□□□□□ -0.6
LIG1-212ENST00000596549 KIAA1324LA8MWY0 1029 aaPredicted RBP11.28□□□□□ -0.6
LIG1-212ENST00000596549 VWC2LB2RUY7 222 aa11.28□□□□□ -0.6
LIG1-212ENST00000596549 B9A039 149 aa11.28□□□□□ -0.6
LIG1-212ENST00000596549 NME4O00746 187 aa11.28□□□□□ -0.6
LIG1-212ENST00000596549 CRLF1O75462 422 aa11.28□□□□□ -0.6
LIG1-212ENST00000596549 OR7A10O76100 309 aa11.28□□□□□ -0.6
LIG1-212ENST00000596549 OR6A2O95222 327 aa11.28□□□□□ -0.6
LIG1-212ENST00000596549 IGF2P01344 180 aa11.28□□□□□ -0.6
LIG1-212ENST00000596549 F13BP05160 661 aa11.28□□□□□ -0.6
LIG1-212ENST00000596549 TSPAN19P0C672 248 aa11.28□□□□□ -0.6
LIG1-212ENST00000596549 CD79AP11912 226 aa11.28□□□□□ -0.6
LIG1-212ENST00000596549 SLC25A16P16260 332 aa11.28□□□□□ -0.6
LIG1-212ENST00000596549 FUT1P19526 365 aa11.28□□□□□ -0.6
LIG1-212ENST00000596549 PPOXP50336 477 aa11.28□□□□□ -0.6
LIG1-212ENST00000596549 PIGFQ07326 219 aa11.28□□□□□ -0.6
LIG1-212ENST00000596549 LOXL1Q08397 574 aaPredicted RBP11.28□□□□□ -0.6
LIG1-212ENST00000596549 TMEM249Q2WGJ8 235 aa11.28□□□□□ -0.6
LIG1-212ENST00000596549 KRT80Q6KB66 452 aa11.28□□□□□ -0.6
LIG1-212ENST00000596549 SLC15A3Q8IY34 581 aa11.28□□□□□ -0.6
LIG1-212ENST00000596549 CCDC36Q8IYA8 594 aa11.28□□□□□ -0.6
LIG1-212ENST00000596549 NOXO1Q8NFA2 376 aa11.28□□□□□ -0.6
LIG1-212ENST00000596549 OR4F15Q8NGB8 312 aa11.28□□□□□ -0.6
LIG1-212ENST00000596549 TMEM239Q8WW34 195 aa11.28□□□□□ -0.6
LIG1-212ENST00000596549 ASB10Q8WXI3 467 aa11.28□□□□□ -0.6
LIG1-212ENST00000596549 ZNF566Q969W8 418 aa11.28□□□□□ -0.6
LIG1-212ENST00000596549 SLC25A44Q96H78 314 aaPredicted RBP11.28□□□□□ -0.6
LIG1-212ENST00000596549 PRRC1Q96M27 445 aa11.28□□□□□ -0.6
LIG1-212ENST00000596549 SEPHS2Q99611 448 aa11.28□□□□□ -0.6
LIG1-212ENST00000596549 POLR2J2Q9GZM3 115 aaKnown RBP11.28□□□□□ -0.6
LIG1-212ENST00000596549 POLR2J3Q9H1A7 115 aaKnown RBP11.28□□□□□ -0.6
LIG1-212ENST00000596549 TMEM38BQ9NVV0 291 aa11.28□□□□□ -0.6
LIG1-212ENST00000596549 GLTPQ9NZD2 209 aa11.28□□□□□ -0.6
LIG1-212ENST00000596549 RIMS3Q9UJD0 308 aa11.28□□□□□ -0.6
LIG1-212ENST00000596549 POFUT2Q9Y2G5 429 aa11.28□□□□□ -0.6
LIG1-212ENST00000596549 TMEM129A0AVI4 362 aa11.27□□□□□ -0.61
LIG1-212ENST00000596549 hCG_2039718K7EN88 272 aa11.27□□□□□ -0.61
LIG1-212ENST00000596549 UBL3O95164 117 aa11.27□□□□□ -0.61
LIG1-212ENST00000596549 F12P00748 615 aaPredicted RBP11.27□□□□□ -0.61
LIG1-212ENST00000596549 CSF3P09919 207 aa11.27□□□□□ -0.61
LIG1-212ENST00000596549 PATE4P0C8F1 98 aa11.27□□□□□ -0.61
LIG1-212ENST00000596549 BMP4P12644 408 aa11.27□□□□□ -0.61
LIG1-212ENST00000596549 COX4I1P13073 169 aa11.27□□□□□ -0.61
LIG1-212ENST00000596549 ZNF35P13682 527 aa11.27□□□□□ -0.61
LIG1-212ENST00000596549 GIPRP48546 466 aa11.27□□□□□ -0.61
LIG1-212ENST00000596549 PTDSS1P48651 473 aaKnown RBP11.27□□□□□ -0.61
LIG1-212ENST00000596549 DSCR9P59020 149 aa11.27□□□□□ -0.61
LIG1-212ENST00000596549 HIST3H3Q16695 136 aa11.27□□□□□ -0.61
LIG1-212ENST00000596549 HSP90B2PQ58FF3 399 aa11.27□□□□□ -0.61
LIG1-212ENST00000596549 C6orf52Q5T4I8 152 aa11.27□□□□□ -0.61
LIG1-212ENST00000596549 LRFN4Q6PJG9 635 aa11.27□□□□□ -0.61
LIG1-212ENST00000596549 ARPINQ7Z6K5 226 aa11.27□□□□□ -0.61
LIG1-212ENST00000596549 VTCN1Q7Z7D3 282 aa11.27□□□□□ -0.61
LIG1-212ENST00000596549 SKA3Q8IX90 412 aa11.27□□□□□ -0.61
LIG1-212ENST00000596549 CDK20Q8IZL9 346 aa11.27□□□□□ -0.61
LIG1-212ENST00000596549 SVOPLQ8N434 492 aa11.27□□□□□ -0.61
LIG1-212ENST00000596549 MOSPD2Q8NHP6 518 aa11.27□□□□□ -0.61
LIG1-212ENST00000596549 RP9Q8TA86 221 aaKnown RBP11.27□□□□□ -0.61
LIG1-212ENST00000596549 LIPHQ8WWY8 451 aa11.27□□□□□ -0.61
LIG1-212ENST00000596549 SGTBQ96EQ0 304 aa11.27□□□□□ -0.61
LIG1-212ENST00000596549 TPD52L3Q96J77 140 aa11.27□□□□□ -0.61
LIG1-212ENST00000596549 TNFRSF13CQ96RJ3 184 aa11.27□□□□□ -0.61
LIG1-212ENST00000596549 ZNF347Q96SE7 839 aa11.27□□□□□ -0.61
LIG1-212ENST00000596549 MRPL13Q9BYD1 178 aaKnown RBP11.27□□□□□ -0.61
LIG1-212ENST00000596549 MAN2C1Q9NTJ4 1040 aa11.27□□□□□ -0.61
LIG1-212ENST00000596549 SNX13Q9Y5W8 968 aa11.27□□□□□ -0.61
LIG1-212ENST00000596549 FKBP7Q9Y680 259 aa11.27□□□□□ -0.61
LIG1-212ENST00000596549 BLOC1S5-TXNDC5H3BN57 136 aa11.26□□□□□ -0.61
LIG1-212ENST00000596549 J3KTA2 159 aa11.26□□□□□ -0.61
LIG1-212ENST00000596549 DHHO43323 396 aa11.26□□□□□ -0.61
LIG1-212ENST00000596549 TLX2O43763 284 aaPredicted RBP11.26□□□□□ -0.61
LIG1-212ENST00000596549 PRSS23O95084 383 aa11.26□□□□□ -0.61
LIG1-212ENST00000596549 IFNA14P01570 189 aa11.26□□□□□ -0.61
LIG1-212ENST00000596549 TP53P04637 393 aaPredicted RBP11.26□□□□□ -0.61
LIG1-212ENST00000596549 THRBP10828 461 aa11.26□□□□□ -0.61
LIG1-212ENST00000596549 ZNF16P17020 682 aaPredicted RBP11.26□□□□□ -0.61
LIG1-212ENST00000596549 NPR2P20594 1047 aa11.26□□□□□ -0.61
LIG1-212ENST00000596549 AQP2P41181 271 aa11.26□□□□□ -0.61
LIG1-212ENST00000596549 SLC7A2P52569 658 aa11.26□□□□□ -0.61
LIG1-212ENST00000596549 RAB1AP62820 205 aa11.26□□□□□ -0.61
LIG1-212ENST00000596549 SELENOWP63302 87 aa11.26□□□□□ -0.61
LIG1-212ENST00000596549 VLDLRP98155 873 aa11.26□□□□□ -0.61
LIG1-212ENST00000596549 MYBPC1Q00872 1141 aa11.26□□□□□ -0.61
LIG1-212ENST00000596549 LIPEQ05469 1076 aa11.26□□□□□ -0.61
LIG1-212ENST00000596549 DAG1Q14118 895 aa11.26□□□□□ -0.61
LIG1-212ENST00000596549 RAB39AQ14964 217 aa11.26□□□□□ -0.61
LIG1-212ENST00000596549 SPATA21Q7Z572 469 aa11.26□□□□□ -0.61
LIG1-212ENST00000596549 OFCC1Q8IZS5 231 aa11.26□□□□□ -0.61
LIG1-212ENST00000596549 ZCCHC24Q8N2G6 241 aaKnown RBP11.26□□□□□ -0.61
LIG1-212ENST00000596549 SLC22A24Q8N4F4 322 aa11.26□□□□□ -0.61
LIG1-212ENST00000596549 DOK1Q99704 481 aa11.26□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 25.3 ms