RNA–Protein interactions for RNA: ENST00000594504.5

UPF1-203, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 3

Gene UPF1, Length 559 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-203ENST00000594504 TUBA1AQ71U36 451 aa10.88□□□□□ -0.67
UPF1-203ENST00000594504 LINGO2Q7L985 606 aa10.88□□□□□ -0.67
UPF1-203ENST00000594504 TSEN54Q7Z6J9 526 aaKnown RBP10.88□□□□□ -0.67
UPF1-203ENST00000594504 OR5J2Q8NH18 312 aa10.88□□□□□ -0.67
UPF1-203ENST00000594504 POP5Q969H6 163 aaKnown RBP10.88□□□□□ -0.67
UPF1-203ENST00000594504 MCUR1Q96AQ8 359 aa10.88□□□□□ -0.67
UPF1-203ENST00000594504 SLC7A6OSQ96CW6 309 aaPredicted RBP10.88□□□□□ -0.67
UPF1-203ENST00000594504 ASB9Q96DX5 294 aa10.88□□□□□ -0.67
UPF1-203ENST00000594504 C7orf34Q96L11 122 aa10.88□□□□□ -0.67
UPF1-203ENST00000594504 THTPAQ9BU02 230 aa10.88□□□□□ -0.67
UPF1-203ENST00000594504 ANKRD19PQ9H560 264 aa10.88□□□□□ -0.67
UPF1-203ENST00000594504 MEPEQ9NQ76 525 aaPredicted RBP10.88□□□□□ -0.67
UPF1-203ENST00000594504 NANSQ9NR45 359 aa10.88□□□□□ -0.67
UPF1-203ENST00000594504 MAN2C1Q9NTJ4 1040 aa10.88□□□□□ -0.67
UPF1-203ENST00000594504 NDUFAF4Q9P032 175 aa10.88□□□□□ -0.67
UPF1-203ENST00000594504 B3GAT1Q9P2W7 334 aa10.88□□□□□ -0.67
UPF1-203ENST00000594504 ZNF229Q9UJW7 825 aa10.88□□□□□ -0.67
UPF1-203ENST00000594504 V9GYQ6 96 aa10.88□□□□□ -0.67
UPF1-203ENST00000594504 IGHV1-18A0A0C4DH31 117 aa10.87□□□□□ -0.67
UPF1-203ENST00000594504 PLPP3O14495 311 aa10.87□□□□□ -0.67
UPF1-203ENST00000594504 STAMBPO95630 424 aa10.87□□□□□ -0.67
UPF1-203ENST00000594504 F12P00748 615 aaPredicted RBP10.87□□□□□ -0.67
UPF1-203ENST00000594504 SEMG1P04279 462 aa10.87□□□□□ -0.67
UPF1-203ENST00000594504 HIST1H2ABP04908 130 aa10.87□□□□□ -0.67
UPF1-203ENST00000594504 SLC25A16P16260 332 aa10.87□□□□□ -0.67
UPF1-203ENST00000594504 ZNF16P17020 682 aaPredicted RBP10.87□□□□□ -0.67
UPF1-203ENST00000594504 ATP6V1B2P21281 511 aa10.87□□□□□ -0.67
UPF1-203ENST00000594504 SELENOPP49908 381 aa10.87□□□□□ -0.67
UPF1-203ENST00000594504 EFNA4P52798 201 aa10.87□□□□□ -0.67
UPF1-203ENST00000594504 LSM11P83369 360 aaKnown RBP eCLIP10.87□□□□□ -0.67
UPF1-203ENST00000594504 VLDLRP98155 873 aa10.87□□□□□ -0.67
UPF1-203ENST00000594504 IL1RL1Q01638 556 aa10.87□□□□□ -0.67
UPF1-203ENST00000594504 CHRNB3Q05901 458 aa10.87□□□□□ -0.67
UPF1-203ENST00000594504 SWI5Q1ZZU3 235 aa10.87□□□□□ -0.67
UPF1-203ENST00000594504 CYB5R2Q6BCY4 276 aa10.87□□□□□ -0.67
UPF1-203ENST00000594504 LCN8Q6JVE9 175 aa10.87□□□□□ -0.67
UPF1-203ENST00000594504 CYP2R1Q6VVX0 501 aa10.87□□□□□ -0.67
UPF1-203ENST00000594504 IL17RELQ6ZVW7 336 aa10.87□□□□□ -0.67
UPF1-203ENST00000594504 HIST3H2AQ7L7L0 130 aa10.87□□□□□ -0.67
UPF1-203ENST00000594504 SLC46A3Q7Z3Q1 461 aa10.87□□□□□ -0.67
UPF1-203ENST00000594504 DHFR2Q86XF0 187 aa10.87□□□□□ -0.67
UPF1-203ENST00000594504 EPHX4Q8IUS5 362 aa10.87□□□□□ -0.67
UPF1-203ENST00000594504 KDM8Q8N371 416 aa10.87□□□□□ -0.67
UPF1-203ENST00000594504 C17orf78Q8N4C9 275 aa10.87□□□□□ -0.67
UPF1-203ENST00000594504 PIK3C3Q8NEB9 887 aa10.87□□□□□ -0.67
UPF1-203ENST00000594504 C1orf162Q8NEQ5 155 aaPredicted RBP10.87□□□□□ -0.67
UPF1-203ENST00000594504 PFN4Q8NHR9 129 aa10.87□□□□□ -0.67
UPF1-203ENST00000594504 ACOT11Q8WXI4 607 aaPredicted RBP10.87□□□□□ -0.67
UPF1-203ENST00000594504 HIST1H2ACQ93077 130 aa10.87□□□□□ -0.67
UPF1-203ENST00000594504 CCDC124Q96CT7 223 aaKnown RBP10.87□□□□□ -0.67
UPF1-203ENST00000594504 SGTBQ96EQ0 304 aa10.87□□□□□ -0.67
UPF1-203ENST00000594504 BTBD10Q9BSF8 475 aa10.87□□□□□ -0.67
UPF1-203ENST00000594504 NMNAT1Q9HAN9 279 aaPredicted RBP10.87□□□□□ -0.67
UPF1-203ENST00000594504 RHCGQ9UBD6 479 aa10.87□□□□□ -0.67
UPF1-203ENST00000594504 RCE1Q9Y256 329 aa10.87□□□□□ -0.67
UPF1-203ENST00000594504 NOX1Q9Y5S8 564 aa10.87□□□□□ -0.67
UPF1-203ENST00000594504 PMF1-BGLAPU3KQ54 211 aa10.87□□□□□ -0.67
UPF1-203ENST00000594504 A0A1W2PRQ8 180 aa10.86□□□□□ -0.67
UPF1-203ENST00000594504 OR6C65A6NJZ3 312 aa10.86□□□□□ -0.67
UPF1-203ENST00000594504 MS4A18H0YCH9 400 aa10.86□□□□□ -0.67
UPF1-203ENST00000594504 hCG_2039718K7EN88 272 aa10.86□□□□□ -0.67
UPF1-203ENST00000594504 PHF1O43189 567 aaPredicted RBP10.86□□□□□ -0.67
UPF1-203ENST00000594504 TRAF3IP2O43734 574 aaPredicted RBP10.86□□□□□ -0.67
UPF1-203ENST00000594504 AKAP8O43823 692 aaKnown RBP10.86□□□□□ -0.67
UPF1-203ENST00000594504 UPK3AO75631 287 aa10.86□□□□□ -0.67
UPF1-203ENST00000594504 ATP5HO75947 161 aa10.86□□□□□ -0.67
UPF1-203ENST00000594504 KRT33AO76009 404 aa10.86□□□□□ -0.67
UPF1-203ENST00000594504 OR7A10O76100 309 aa10.86□□□□□ -0.67
UPF1-203ENST00000594504 OR6A2O95222 327 aa10.86□□□□□ -0.67
UPF1-203ENST00000594504 WNT11O96014 354 aa10.86□□□□□ -0.67
UPF1-203ENST00000594504 HPRP00739 348 aa10.86□□□□□ -0.67
UPF1-203ENST00000594504 FABP3P05413 133 aa10.86□□□□□ -0.67
UPF1-203ENST00000594504 H1F0P07305 194 aaKnown RBP10.86□□□□□ -0.67
UPF1-203ENST00000594504 ASAH2BP0C7U1 165 aa10.86□□□□□ -0.67
UPF1-203ENST00000594504 FAM157CP0CG43 387 aa10.86□□□□□ -0.67
UPF1-203ENST00000594504 ADORA3P0DMS8 318 aa10.86□□□□□ -0.67
UPF1-203ENST00000594504 UMPSP11172 480 aa10.86□□□□□ -0.67
UPF1-203ENST00000594504 FUT4P22083 530 aa10.86□□□□□ -0.67
UPF1-203ENST00000594504 RASSF2P50749 326 aa10.86□□□□□ -0.67
UPF1-203ENST00000594504 CLDN17P56750 224 aa10.86□□□□□ -0.67
UPF1-203ENST00000594504 MS4A2Q01362 244 aa10.86□□□□□ -0.67
UPF1-203ENST00000594504 TGFBR3Q03167 851 aa10.86□□□□□ -0.67
UPF1-203ENST00000594504 DGCR6Q14129 220 aa10.86□□□□□ -0.67
UPF1-203ENST00000594504 MS4A18Q3C1V0 323 aa10.86□□□□□ -0.67
UPF1-203ENST00000594504 TBRG1Q3YBR2 411 aa10.86□□□□□ -0.67
UPF1-203ENST00000594504 IQCCQ4KMZ1 466 aa10.86□□□□□ -0.67
UPF1-203ENST00000594504 NIPAL3Q6P499 406 aa10.86□□□□□ -0.67
UPF1-203ENST00000594504 NANOGNBQ7Z5D8 188 aa10.86□□□□□ -0.67
UPF1-203ENST00000594504 PXKQ7Z7A4 578 aa10.86□□□□□ -0.67
UPF1-203ENST00000594504 UEVLDQ8IX04 471 aa10.86□□□□□ -0.67
UPF1-203ENST00000594504 RNF113BQ8IZP6 322 aaKnown RBP10.86□□□□□ -0.67
UPF1-203ENST00000594504 LRRC17Q8N6Y2 441 aa10.86□□□□□ -0.67
UPF1-203ENST00000594504 POMGNT2Q8NAT1 580 aa10.86□□□□□ -0.67
UPF1-203ENST00000594504 OR1K1Q8NGR3 316 aa10.86□□□□□ -0.67
UPF1-203ENST00000594504 LIPHQ8WWY8 451 aa10.86□□□□□ -0.67
UPF1-203ENST00000594504 CLPTM1LQ96KA5 538 aa10.86□□□□□ -0.67
UPF1-203ENST00000594504 SORCS2Q96PQ0 1159 aa10.86□□□□□ -0.67
UPF1-203ENST00000594504 BEX2Q9BXY8 128 aa10.86□□□□□ -0.67
UPF1-203ENST00000594504 SEC61A2Q9H9S3 476 aa10.86□□□□□ -0.67
UPF1-203ENST00000594504 IL1RAPQ9NPH3 570 aa10.86□□□□□ -0.67
Retrieved 100 of 20,778 RNA–protein pairs in 29.1 ms