RNA–Protein interactions for RNA: ENST00000587945.1

VMP1-206, Transcript of vacuole membrane protein 1, humanhuman

TSL 3

Gene VMP1, Length 583 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VMP1-206ENST00000587945 SLC35D2Q76EJ3 337 aa12.37□□□□□ -0.43
VMP1-206ENST00000587945 ZNF627Q7L945 461 aa12.37□□□□□ -0.43
VMP1-206ENST00000587945 PATL1Q86TB9 770 aaKnown RBP12.37□□□□□ -0.43
VMP1-206ENST00000587945 NEU4Q8WWR8 484 aaPredicted RBP12.37□□□□□ -0.43
VMP1-206ENST00000587945 STON2Q8WXE9 905 aa12.37□□□□□ -0.43
VMP1-206ENST00000587945 MRPL37Q9BZE1 423 aaKnown RBP12.37□□□□□ -0.43
VMP1-206ENST00000587945 TAS2R5Q9NYW4 299 aa12.37□□□□□ -0.43
VMP1-206ENST00000587945 LPAR3Q9UBY5 353 aa12.37□□□□□ -0.43
VMP1-206ENST00000587945 FZR1Q9UM11 496 aa12.37□□□□□ -0.43
VMP1-206ENST00000587945 STAB1Q9NY15 2570 aa12.37□□□□□ -0.43
VMP1-206ENST00000587945 TRAPPC13A5PLN9 417 aa12.36□□□□□ -0.43
VMP1-206ENST00000587945 FBP2O00757 339 aa12.36□□□□□ -0.43
VMP1-206ENST00000587945 RNF13O43567 381 aa12.36□□□□□ -0.43
VMP1-206ENST00000587945 RAB36O95755 333 aa12.36□□□□□ -0.43
VMP1-206ENST00000587945 TGFAP01135 160 aa12.36□□□□□ -0.43
VMP1-206ENST00000587945 TCN1P20061 433 aaPredicted RBP12.36□□□□□ -0.43
VMP1-206ENST00000587945 IL2RGP31785 369 aa12.36□□□□□ -0.43
VMP1-206ENST00000587945 GZMMP51124 257 aa12.36□□□□□ -0.43
VMP1-206ENST00000587945 CRYBA2P53672 197 aa12.36□□□□□ -0.43
VMP1-206ENST00000587945 SF3A3Q12874 501 aaKnown RBP eCLIP12.36□□□□□ -0.43
VMP1-206ENST00000587945 RAB39AQ14964 217 aa12.36□□□□□ -0.43
VMP1-206ENST00000587945 TRMT5Q32P41 509 aaKnown RBP12.36□□□□□ -0.43
VMP1-206ENST00000587945 FAM120AOSQ5T036 256 aa12.36□□□□□ -0.43
VMP1-206ENST00000587945 LRFN4Q6PJG9 635 aa12.36□□□□□ -0.43
VMP1-206ENST00000587945 HDXQ7Z353 690 aa12.36□□□□□ -0.43
VMP1-206ENST00000587945 LRP11Q86VZ4 500 aa12.36□□□□□ -0.43
VMP1-206ENST00000587945 SKA3Q8IX90 412 aa12.36□□□□□ -0.43
VMP1-206ENST00000587945 ZNF540Q8NDQ6 660 aa12.36□□□□□ -0.43
VMP1-206ENST00000587945 OR6X1Q8NH79 312 aa12.36□□□□□ -0.43
VMP1-206ENST00000587945 SLC26A7Q8TE54 656 aa12.36□□□□□ -0.43
VMP1-206ENST00000587945 UBASH3BQ8TF42 649 aa12.36□□□□□ -0.43
VMP1-206ENST00000587945 TMEM158Q8WZ71 300 aa12.36□□□□□ -0.43
VMP1-206ENST00000587945 TMEM54Q969K7 222 aa12.36□□□□□ -0.43
VMP1-206ENST00000587945 MRPL24Q96A35 216 aaKnown RBP12.36□□□□□ -0.43
VMP1-206ENST00000587945 SYT3Q9BQG1 590 aa12.36□□□□□ -0.43
VMP1-206ENST00000587945 NANSQ9NR45 359 aa12.36□□□□□ -0.43
VMP1-206ENST00000587945 GLTPQ9NZD2 209 aa12.36□□□□□ -0.43
VMP1-206ENST00000587945 FBXO9Q9UK97 447 aaPredicted RBP12.36□□□□□ -0.43
VMP1-206ENST00000587945 SHOX2O60902 331 aaPredicted RBP12.35□□□□□ -0.43
VMP1-206ENST00000587945 LILRA1O75019 489 aa12.35□□□□□ -0.43
VMP1-206ENST00000587945 ERCC1P07992 297 aaPredicted RBP12.35□□□□□ -0.43
VMP1-206ENST00000587945 UMPSP11172 480 aa12.35□□□□□ -0.43
VMP1-206ENST00000587945 SRD5A1P18405 259 aa12.35□□□□□ -0.43
VMP1-206ENST00000587945 TNFRSF1BP20333 461 aa12.35□□□□□ -0.43
VMP1-206ENST00000587945 GIFP27352 417 aa12.35□□□□□ -0.43
VMP1-206ENST00000587945 ALDH3B1P43353 468 aa12.35□□□□□ -0.43
VMP1-206ENST00000587945 ZP4Q12836 540 aa12.35□□□□□ -0.43
VMP1-206ENST00000587945 TRIP10Q15642 601 aa12.35□□□□□ -0.43
VMP1-206ENST00000587945 VMACQ2NL98 169 aa12.35□□□□□ -0.43
VMP1-206ENST00000587945 RABL3Q5HYI8 236 aa12.35□□□□□ -0.43
VMP1-206ENST00000587945 NANOGP8Q6NSW7 305 aa12.35□□□□□ -0.43
VMP1-206ENST00000587945 SNX32Q86XE0 403 aa12.35□□□□□ -0.43
VMP1-206ENST00000587945 ZNF584Q8IVC4 421 aa12.35□□□□□ -0.43
VMP1-206ENST00000587945 SLC30A8Q8IWU4 369 aa12.35□□□□□ -0.43
VMP1-206ENST00000587945 TSPEARQ8WU66 669 aa12.35□□□□□ -0.43
VMP1-206ENST00000587945 SH3GL3Q99963 347 aa12.35□□□□□ -0.43
VMP1-206ENST00000587945 PRSS27Q9BQR3 290 aa12.35□□□□□ -0.43
VMP1-206ENST00000587945 NANOGQ9H9S0 305 aa12.35□□□□□ -0.43
VMP1-206ENST00000587945 MEPEQ9NQ76 525 aaPredicted RBP12.35□□□□□ -0.43
VMP1-206ENST00000587945 MYEF2Q9P2K5 600 aaKnown RBP12.35□□□□□ -0.43
VMP1-206ENST00000587945 REV1Q9UBZ9 1251 aa12.35□□□□□ -0.43
VMP1-206ENST00000587945 FBN3Q75N90 2809 aa12.35□□□□□ -0.43
VMP1-206ENST00000587945 SYNGR3O43761 229 aa12.34□□□□□ -0.43
VMP1-206ENST00000587945 UBL3O95164 117 aa12.34□□□□□ -0.43
VMP1-206ENST00000587945 HIST1H2ABP04908 130 aa12.34□□□□□ -0.43
VMP1-206ENST00000587945 ASAH2BP0C7U1 165 aa12.34□□□□□ -0.43
VMP1-206ENST00000587945 GLRXP35754 106 aa12.34□□□□□ -0.43
VMP1-206ENST00000587945 SEC24CP53992 1094 aa12.34□□□□□ -0.43
VMP1-206ENST00000587945 RUNX1T1Q06455 604 aa12.34□□□□□ -0.43
VMP1-206ENST00000587945 RIN1Q13671 783 aa12.34□□□□□ -0.43
VMP1-206ENST00000587945 MAD2L1BPQ15013 274 aaPredicted RBP12.34□□□□□ -0.43
VMP1-206ENST00000587945 INTS11Q5TA45 600 aaKnown RBP12.34□□□□□ -0.43
VMP1-206ENST00000587945 GKAP1Q5VSY0 366 aaPredicted RBP12.34□□□□□ -0.43
VMP1-206ENST00000587945 CCDC80Q76M96 950 aa12.34□□□□□ -0.43
VMP1-206ENST00000587945 HIST3H2AQ7L7L0 130 aa12.34□□□□□ -0.43
VMP1-206ENST00000587945 CARM1Q86X55 608 aa12.34□□□□□ -0.43
VMP1-206ENST00000587945 ZNF786Q8N393 782 aa12.34□□□□□ -0.43
VMP1-206ENST00000587945 SLC22A24Q8N4F4 322 aa12.34□□□□□ -0.43
VMP1-206ENST00000587945 PFN4Q8NHR9 129 aa12.34□□□□□ -0.43
VMP1-206ENST00000587945 HIST1H2ACQ93077 130 aa12.34□□□□□ -0.43
VMP1-206ENST00000587945 ZNF566Q969W8 418 aa12.34□□□□□ -0.43
VMP1-206ENST00000587945 SLC25A44Q96H78 314 aaPredicted RBP12.34□□□□□ -0.43
VMP1-206ENST00000587945 SNX18Q96RF0 628 aa12.34□□□□□ -0.43
VMP1-206ENST00000587945 ZNF426Q9BUY5 554 aa12.34□□□□□ -0.43
VMP1-206ENST00000587945 TMEM120AQ9BXJ8 343 aa12.34□□□□□ -0.43
VMP1-206ENST00000587945 PCDHAC1Q9H158 963 aa12.34□□□□□ -0.43
VMP1-206ENST00000587945 ZNF229Q9UJW7 825 aa12.34□□□□□ -0.43
VMP1-206ENST00000587945 SPEF1Q9Y4P9 236 aa12.34□□□□□ -0.43
VMP1-206ENST00000587945 MXRA5Q9NR99 2828 aa12.34□□□□□ -0.43
VMP1-206ENST00000587945 BLOC1S5-TXNDC5H3BN57 136 aa12.33□□□□□ -0.44
VMP1-206ENST00000587945 M0R233 179 aa12.33□□□□□ -0.44
VMP1-206ENST00000587945 DHHO43323 396 aa12.33□□□□□ -0.44
VMP1-206ENST00000587945 SASH3O75995 380 aa12.33□□□□□ -0.44
VMP1-206ENST00000587945 QDPRP09417 244 aa12.33□□□□□ -0.44
VMP1-206ENST00000587945 TACSTD2P09758 323 aa12.33□□□□□ -0.44
VMP1-206ENST00000587945 PGA4P0DJD7 388 aa12.33□□□□□ -0.44
VMP1-206ENST00000587945 PGA3P0DJD8 388 aa12.33□□□□□ -0.44
VMP1-206ENST00000587945 CCL2P13500 99 aa12.33□□□□□ -0.44
VMP1-206ENST00000587945 APEX1P27695 318 aaKnown RBP12.33□□□□□ -0.44
VMP1-206ENST00000587945 EVX1P49640 407 aa12.33□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 39 ms