RNA–Protein interactions for RNA: ENST00000582792.5

SS18-222, Transcript of SS18, nBAF chromatin remodeling complex subunit, human

TSL 5

Gene SS18, Length 531 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SS18-222	ENST00000582792	CCDC36	Q8IYA8	594 aa		11.69	□□□□□ -0.54
SS18-222	ENST00000582792	KDM8	Q8N371	416 aa		11.69	□□□□□ -0.54
SS18-222	ENST00000582792	OR2T12	Q8NG77	320 aa		11.69	□□□□□ -0.54
SS18-222	ENST00000582792	MFSD8	Q8NHS3	518 aa		11.69	□□□□□ -0.54
SS18-222	ENST00000582792	STK35	Q8TDR2	534 aa		11.69	□□□□□ -0.54
SS18-222	ENST00000582792	ZMYND19	Q96E35	227 aa	Predicted RBP	11.69	□□□□□ -0.54
SS18-222	ENST00000582792	C1orf21	Q9H246	121 aa		11.69	□□□□□ -0.54
SS18-222	ENST00000582792	NOX3	Q9HBY0	568 aa		11.69	□□□□□ -0.54
SS18-222	ENST00000582792	CRLF2	Q9HC73	371 aa		11.69	□□□□□ -0.54
SS18-222	ENST00000582792	GPR35	Q9HC97	309 aa		11.69	□□□□□ -0.54
SS18-222	ENST00000582792	SPAG4	Q9NPE6	437 aa		11.69	□□□□□ -0.54
SS18-222	ENST00000582792	ZNF443	Q9Y2A4	671 aa	Predicted RBP	11.69	□□□□□ -0.54
SS18-222	ENST00000582792	CMAHP	Q9Y471	501 aa		11.69	□□□□□ -0.54
SS18-222	ENST00000582792	ELOVL7	A1L3X0	281 aa		11.68	□□□□□ -0.54
SS18-222	ENST00000582792	NME4	O00746	187 aa		11.68	□□□□□ -0.54
SS18-222	ENST00000582792	SYNGR3	O43761	229 aa		11.68	□□□□□ -0.54
SS18-222	ENST00000582792	SLC43A1	O75387	559 aa		11.68	□□□□□ -0.54
SS18-222	ENST00000582792	AHSA1	O95433	338 aa		11.68	□□□□□ -0.54
SS18-222	ENST00000582792	T-ENOL	P0DO92	83 aa		11.68	□□□□□ -0.54
SS18-222	ENST00000582792	PRG2	P13727	222 aa		11.68	□□□□□ -0.54
SS18-222	ENST00000582792	ZNF43	P17038	809 aa		11.68	□□□□□ -0.54
SS18-222	ENST00000582792	EVX1	P49640	407 aa		11.68	□□□□□ -0.54
SS18-222	ENST00000582792	ACTG1	P63261	375 aa		11.68	□□□□□ -0.54
SS18-222	ENST00000582792	LIPE	Q05469	1076 aa		11.68	□□□□□ -0.54
SS18-222	ENST00000582792	SCGB2A2	Q13296	93 aa		11.68	□□□□□ -0.54
SS18-222	ENST00000582792	CEACAM16	Q2WEN9	425 aa		11.68	□□□□□ -0.54
SS18-222	ENST00000582792	ZNF311	Q5JNZ3	666 aa		11.68	□□□□□ -0.54
SS18-222	ENST00000582792	RPS26P11	Q5JNZ5	115 aa	Predicted RBP	11.68	□□□□□ -0.54
SS18-222	ENST00000582792	ELFN2	Q5R3F8	820 aa		11.68	□□□□□ -0.54
SS18-222	ENST00000582792	KRT80	Q6KB66	452 aa		11.68	□□□□□ -0.54
SS18-222	ENST00000582792	MDP1	Q86V88	176 aa		11.68	□□□□□ -0.54
SS18-222	ENST00000582792	MICU2	Q8IYU8	434 aa		11.68	□□□□□ -0.54
SS18-222	ENST00000582792	ARHGAP24	Q8N264	748 aa		11.68	□□□□□ -0.54
SS18-222	ENST00000582792	GPR137C	Q8N3F9	429 aa		11.68	□□□□□ -0.54
SS18-222	ENST00000582792	CLDND2	Q8NHS1	167 aa		11.68	□□□□□ -0.54
SS18-222	ENST00000582792	RASSF5	Q8WWW0	418 aa		11.68	□□□□□ -0.54
SS18-222	ENST00000582792	MRPL24	Q96A35	216 aa	Known RBP	11.68	□□□□□ -0.54
SS18-222	ENST00000582792	TMEM186	Q96B77	213 aa		11.68	□□□□□ -0.54
SS18-222	ENST00000582792	ZNF837	Q96EG3	531 aa	Predicted RBP	11.68	□□□□□ -0.54
SS18-222	ENST00000582792	PTDSS2	Q9BVG9	487 aa		11.68	□□□□□ -0.54
SS18-222	ENST00000582792	HIF1AN	Q9NWT6	349 aa		11.68	□□□□□ -0.54
SS18-222	ENST00000582792	USP22	Q9UPT9	525 aa		11.68	□□□□□ -0.54
SS18-222	ENST00000582792	SPEF1	Q9Y4P9	236 aa		11.68	□□□□□ -0.54
SS18-222	ENST00000582792		B2RBV5	119 aa		11.67	□□□□□ -0.54
SS18-222	ENST00000582792	FAM157A	C9JC47	383 aa		11.67	□□□□□ -0.54
SS18-222	ENST00000582792	FZD7	O75084	574 aa		11.67	□□□□□ -0.54
SS18-222	ENST00000582792	MFN2	O95140	757 aa		11.67	□□□□□ -0.54
SS18-222	ENST00000582792	IFNA14	P01570	189 aa		11.67	□□□□□ -0.54
SS18-222	ENST00000582792	MSMB	P08118	114 aa		11.67	□□□□□ -0.54
SS18-222	ENST00000582792	EGR1	P18146	543 aa		11.67	□□□□□ -0.54
SS18-222	ENST00000582792	NR4A1	P22736	598 aa		11.67	□□□□□ -0.54
SS18-222	ENST00000582792	GTF2E2	P29084	291 aa	Known RBP	11.67	□□□□□ -0.54
SS18-222	ENST00000582792	GPR6	P46095	362 aa	Predicted RBP	11.67	□□□□□ -0.54
SS18-222	ENST00000582792	RPS5	P46782	204 aa	Known RBP	11.67	□□□□□ -0.54
SS18-222	ENST00000582792	MSMP	Q1L6U9	139 aa		11.67	□□□□□ -0.54
SS18-222	ENST00000582792	SAMD4B	Q5PRF9	694 aa	Known RBP	11.67	□□□□□ -0.54
SS18-222	ENST00000582792	C6orf89	Q6UWU4	347 aa		11.67	□□□□□ -0.54
SS18-222	ENST00000582792	CLIP4	Q8N3C7	705 aa		11.67	□□□□□ -0.54
SS18-222	ENST00000582792	SGMS2	Q8NHU3	365 aa		11.67	□□□□□ -0.54
SS18-222	ENST00000582792	ZNF418	Q8TF45	676 aa	Predicted RBP	11.67	□□□□□ -0.54
SS18-222	ENST00000582792	SLC25A36	Q96CQ1	311 aa		11.67	□□□□□ -0.54
SS18-222	ENST00000582792	OXGR1	Q96P68	337 aa		11.67	□□□□□ -0.54
SS18-222	ENST00000582792	MRPL37	Q9BZE1	423 aa	Known RBP	11.67	□□□□□ -0.54
SS18-222	ENST00000582792	RACGAP1	Q9H0H5	632 aa		11.67	□□□□□ -0.54
SS18-222	ENST00000582792	MS4A5	Q9H3V2	200 aa		11.67	□□□□□ -0.54
SS18-222	ENST00000582792	B3GAT1	Q9P2W7	334 aa		11.67	□□□□□ -0.54
SS18-222	ENST00000582792	REV1	Q9UBZ9	1251 aa		11.67	□□□□□ -0.54
SS18-222	ENST00000582792	SEC14L4	Q9UDX3	406 aa		11.67	□□□□□ -0.54
SS18-222	ENST00000582792	GRIP1	Q9Y3R0	1128 aa		11.67	□□□□□ -0.54
SS18-222	ENST00000582792	TMEM89	A2RUT3	159 aa		11.66	□□□□□ -0.54
SS18-222	ENST00000582792	ZNF99	A8MXY4	864 aa	Predicted RBP	11.66	□□□□□ -0.54
SS18-222	ENST00000582792		M0QX08	132 aa		11.66	□□□□□ -0.54
SS18-222	ENST00000582792		M0R233	179 aa		11.66	□□□□□ -0.54
SS18-222	ENST00000582792	ATP5H	O75947	161 aa		11.66	□□□□□ -0.54
SS18-222	ENST00000582792	SEC14L2	O76054	403 aa		11.66	□□□□□ -0.54
SS18-222	ENST00000582792	TF	P02787	698 aa		11.66	□□□□□ -0.54
SS18-222	ENST00000582792	SAG	P10523	405 aa	Predicted RBP	11.66	□□□□□ -0.54
SS18-222	ENST00000582792	HSD17B1	P14061	328 aa		11.66	□□□□□ -0.54
SS18-222	ENST00000582792	ACHE	P22303	614 aa		11.66	□□□□□ -0.54
SS18-222	ENST00000582792	CAPZA2	P47755	286 aa		11.66	□□□□□ -0.54
SS18-222	ENST00000582792	GSK3B	P49841	420 aa		11.66	□□□□□ -0.54
SS18-222	ENST00000582792	MXRA7	P84157	204 aa		11.66	□□□□□ -0.54
SS18-222	ENST00000582792	EGR4	Q05215	589 aa		11.66	□□□□□ -0.54
SS18-222	ENST00000582792	FXN	Q16595	210 aa		11.66	□□□□□ -0.54
SS18-222	ENST00000582792	CARM1	Q86X55	608 aa		11.66	□□□□□ -0.54
SS18-222	ENST00000582792	ARMC8	Q8IUR7	673 aa		11.66	□□□□□ -0.54
SS18-222	ENST00000582792	C3orf56	Q8N813	242 aa		11.66	□□□□□ -0.54
SS18-222	ENST00000582792	RBM15B	Q8NDT2	890 aa	Known RBP	11.66	□□□□□ -0.54
SS18-222	ENST00000582792	PIK3C3	Q8NEB9	887 aa		11.66	□□□□□ -0.54
SS18-222	ENST00000582792	FAM216A	Q8WUB2	273 aa		11.66	□□□□□ -0.54
SS18-222	ENST00000582792	KTI12	Q96EK9	354 aa	Predicted RBP	11.66	□□□□□ -0.54
SS18-222	ENST00000582792	OR2M2	Q96R28	347 aa		11.66	□□□□□ -0.54
SS18-222	ENST00000582792	NARFL	Q9H6Q4	476 aa		11.66	□□□□□ -0.54
SS18-222	ENST00000582792	LPAR2	Q9HBW0	351 aa		11.66	□□□□□ -0.54
SS18-222	ENST00000582792	B3GNT2	Q9NY97	397 aa		11.66	□□□□□ -0.54
SS18-222	ENST00000582792	CD300A	Q9UGN4	299 aa		11.66	□□□□□ -0.54
SS18-222	ENST00000582792	CHST2	Q9Y4C5	530 aa		11.66	□□□□□ -0.54
SS18-222	ENST00000582792	AKAP8	O43823	692 aa	Known RBP	11.65	□□□□□ -0.54
SS18-222	ENST00000582792	UBOX5	O94941	541 aa		11.65	□□□□□ -0.54
SS18-222	ENST00000582792	HPX	P02790	462 aa		11.65	□□□□□ -0.54

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