RNA–Protein interactions for RNA: ENST00000581226.1

SMCHD1-204, Transcript of structural maintenance of chromosomes flexible hinge domain containing 1, humanhuman

TSL 3

Gene SMCHD1, Length 459 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMCHD1-204ENST00000581226 GABARAPL3Q9BY60 117 aa2.61□□□□□ -1.99
SMCHD1-204ENST00000581226 VCX2Q9H322 139 aa2.61□□□□□ -1.99
SMCHD1-204ENST00000581226 NIPAL2Q9H841 368 aa2.61□□□□□ -1.99
SMCHD1-204ENST00000581226 ZNFX1Q9P2E3 1918 aaKnown RBP2.6□□□□□ -1.99
SMCHD1-204ENST00000581226 IGKV1D-13A0A0B4J2D9 117 aa2.6□□□□□ -1.99
SMCHD1-204ENST00000581226 A0A1B0GVI7 797 aa2.6□□□□□ -1.99
SMCHD1-204ENST00000581226 CIB4A0PJX0 185 aa2.6□□□□□ -1.99
SMCHD1-204ENST00000581226 SURF6O75683 361 aaKnown RBP2.6□□□□□ -1.99
SMCHD1-204ENST00000581226 OR7A10O76100 309 aa2.6□□□□□ -1.99
SMCHD1-204ENST00000581226 GAPDHP04406 335 aaKnown RBP2.6□□□□□ -1.99
SMCHD1-204ENST00000581226 FGF1P05230 155 aa2.6□□□□□ -1.99
SMCHD1-204ENST00000581226 MRPL3P09001 348 aaKnown RBP2.6□□□□□ -1.99
SMCHD1-204ENST00000581226 SMIM10L1P0DMW3 83 aa2.6□□□□□ -1.99
SMCHD1-204ENST00000581226 IGKV1-13P0DP09 117 aa2.6□□□□□ -1.99
SMCHD1-204ENST00000581226 OMGP23515 440 aa2.6□□□□□ -1.99
SMCHD1-204ENST00000581226 HSD17B2P37059 387 aa2.6□□□□□ -1.99
SMCHD1-204ENST00000581226 SSR1P43307 286 aaKnown RBP2.6□□□□□ -1.99
SMCHD1-204ENST00000581226 KRTAP10-1P60331 282 aa2.6□□□□□ -1.99
SMCHD1-204ENST00000581226 RPS21P63220 83 aaKnown RBP2.6□□□□□ -1.99
SMCHD1-204ENST00000581226 MRPL28Q13084 256 aaKnown RBP2.6□□□□□ -1.99
SMCHD1-204ENST00000581226 UQCC3Q6UW78 93 aa2.6□□□□□ -1.99
SMCHD1-204ENST00000581226 LINC00173Q6ZV60 143 aa2.6□□□□□ -1.99
SMCHD1-204ENST00000581226 FAM86B1Q8N7N1 296 aa2.6□□□□□ -1.99
SMCHD1-204ENST00000581226 FAM83FQ8NEG4 500 aaPredicted RBP2.6□□□□□ -1.99
SMCHD1-204ENST00000581226 SMIM10Q96HG1 83 aa2.6□□□□□ -1.99
SMCHD1-204ENST00000581226 TSSK3Q96PN8 268 aa2.6□□□□□ -1.99
SMCHD1-204ENST00000581226 OR8B4Q96RC9 309 aa2.6□□□□□ -1.99
SMCHD1-204ENST00000581226 TRIM62Q9BVG3 475 aa2.6□□□□□ -1.99
SMCHD1-204ENST00000581226 AZI2Q9H6S1 392 aa2.6□□□□□ -1.99
SMCHD1-204ENST00000581226 UGT1A7Q9HAW7 530 aa2.6□□□□□ -1.99
SMCHD1-204ENST00000581226 UGT1A10Q9HAW8 530 aa2.6□□□□□ -1.99
SMCHD1-204ENST00000581226 UGT1A8Q9HAW9 530 aa2.6□□□□□ -1.99
SMCHD1-204ENST00000581226 NMRAL1Q9HBL8 299 aa2.6□□□□□ -1.99
SMCHD1-204ENST00000581226 NOX3Q9HBY0 568 aa2.6□□□□□ -1.99
SMCHD1-204ENST00000581226 SLC40A1Q9NP59 571 aa2.6□□□□□ -1.99
SMCHD1-204ENST00000581226 CD84Q9UIB8 345 aa2.6□□□□□ -1.99
SMCHD1-204ENST00000581226 CLEC4AQ9UMR7 237 aa2.6□□□□□ -1.99
SMCHD1-204ENST00000581226 SPRR5A0A1B0GTR4 108 aa2.59□□□□□ -1.99
SMCHD1-204ENST00000581226 A0A1B0GVL5 298 aa2.59□□□□□ -1.99
SMCHD1-204ENST00000581226 CLRN2A0PK11 232 aa2.59□□□□□ -1.99
SMCHD1-204ENST00000581226 TIMM8AO60220 97 aaPredicted RBP2.59□□□□□ -1.99
SMCHD1-204ENST00000581226 IL1BP01584 269 aa2.59□□□□□ -1.99
SMCHD1-204ENST00000581226 TLX1NBP0CAT3 122 aa2.59□□□□□ -1.99
SMCHD1-204ENST00000581226 UBTFL1P0CB47 393 aaPredicted RBP2.59□□□□□ -1.99
SMCHD1-204ENST00000581226 PGAM1P18669 254 aa2.59□□□□□ -1.99
SMCHD1-204ENST00000581226 CCR8P51685 355 aa2.59□□□□□ -1.99
SMCHD1-204ENST00000581226 NCBP2P52298 156 aaKnown RBP eCLIP2.59□□□□□ -1.99
SMCHD1-204ENST00000581226 MOBPQ13875 183 aa2.59□□□□□ -1.99
SMCHD1-204ENST00000581226 CEP55Q53EZ4 464 aa2.59□□□□□ -1.99
SMCHD1-204ENST00000581226 KDELC1Q6UW63 502 aa2.59□□□□□ -1.99
SMCHD1-204ENST00000581226 C19orf35Q6ZS72 473 aa2.59□□□□□ -1.99
SMCHD1-204ENST00000581226 PGAM4Q8N0Y7 254 aa2.59□□□□□ -1.99
SMCHD1-204ENST00000581226 MREGQ8N565 214 aa2.59□□□□□ -1.99
SMCHD1-204ENST00000581226 ZNF557Q8N988 423 aaPredicted RBP2.59□□□□□ -1.99
SMCHD1-204ENST00000581226 EIF1ADQ8N9N8 165 aaKnown RBP2.59□□□□□ -1.99
SMCHD1-204ENST00000581226 OR2G2Q8NGZ5 317 aa2.59□□□□□ -1.99
SMCHD1-204ENST00000581226 HSFY1Q96LI6 401 aa2.59□□□□□ -1.99
SMCHD1-204ENST00000581226 PANX2Q96RD6 677 aa2.59□□□□□ -1.99
SMCHD1-204ENST00000581226 CNN2Q99439 309 aaKnown RBP2.59□□□□□ -1.99
SMCHD1-204ENST00000581226 NPY6RQ99463 290 aa2.59□□□□□ -1.99
SMCHD1-204ENST00000581226 FMO2Q99518 471 aa2.59□□□□□ -1.99
SMCHD1-204ENST00000581226 NDFIP1Q9BT67 221 aa2.59□□□□□ -1.99
SMCHD1-204ENST00000581226 OSBPL10Q9BXB5 764 aa2.59□□□□□ -1.99
SMCHD1-204ENST00000581226 MFFQ9GZY8 342 aa2.59□□□□□ -1.99
SMCHD1-204ENST00000581226 CEMIPQ8WUJ3 1361 aa2.59□□□□□ -2
SMCHD1-204ENST00000581226 SNTNA6NMZ2 147 aa2.58□□□□□ -2
SMCHD1-204ENST00000581226 FOXE1O00358 373 aaPredicted RBP2.58□□□□□ -2
SMCHD1-204ENST00000581226 KMOO15229 486 aa2.58□□□□□ -2
SMCHD1-204ENST00000581226 B4GALT5O43286 388 aa2.58□□□□□ -2
SMCHD1-204ENST00000581226 ERLIN2O94905 339 aa2.58□□□□□ -2
SMCHD1-204ENST00000581226 IGHV2-5P01817 119 aa2.58□□□□□ -2
SMCHD1-204ENST00000581226 RHOXF2BP0C7M4 288 aa2.58□□□□□ -2
SMCHD1-204ENST00000581226 ATP5C1P36542 298 aaKnown RBP2.58□□□□□ -2
SMCHD1-204ENST00000581226 AIF1P55008 147 aa2.58□□□□□ -2
SMCHD1-204ENST00000581226 KCTD21Q4G0X4 260 aa2.58□□□□□ -2
SMCHD1-204ENST00000581226 LRRC23Q53EV4 343 aaPredicted RBP2.58□□□□□ -2
SMCHD1-204ENST00000581226 C5orf47Q569G3 176 aa2.58□□□□□ -2
SMCHD1-204ENST00000581226 LY6G6FQ5SQ64 297 aa2.58□□□□□ -2
SMCHD1-204ENST00000581226 LCE1CQ5T751 118 aa2.58□□□□□ -2
SMCHD1-204ENST00000581226 LCE1BQ5T7P3 118 aa2.58□□□□□ -2
SMCHD1-204ENST00000581226 OR2A2Q6IF42 318 aa2.58□□□□□ -2
SMCHD1-204ENST00000581226 NANOGP8Q6NSW7 305 aa2.58□□□□□ -2
SMCHD1-204ENST00000581226 KDM7AQ6ZMT4 941 aa2.58□□□□□ -2
SMCHD1-204ENST00000581226 PUSL1Q8N0Z8 303 aaKnown RBP2.58□□□□□ -2
SMCHD1-204ENST00000581226 LRRC75A-AS1Q8N1F1 130 aa2.58□□□□□ -2
SMCHD1-204ENST00000581226 OR1L4Q8NGR5 311 aa2.58□□□□□ -2
SMCHD1-204ENST00000581226 FRZBQ92765 325 aa2.58□□□□□ -2
SMCHD1-204ENST00000581226 RARRES2Q99969 163 aa2.58□□□□□ -2
SMCHD1-204ENST00000581226 KCTD14Q9BQ13 255 aaPredicted RBP2.58□□□□□ -2
SMCHD1-204ENST00000581226 PIGLQ9Y2B2 252 aa2.58□□□□□ -2
SMCHD1-204ENST00000581226 YTHDF2Q9Y5A9 579 aaKnown RBP2.58□□□□□ -2
SMCHD1-204ENST00000581226 MN1Q10571 1320 aaPredicted RBP2.58□□□□□ -2
SMCHD1-204ENST00000581226 CDHR2Q9BYE9 1310 aa2.58□□□□□ -2
SMCHD1-204ENST00000581226 LRP4O75096 1905 aa2.58□□□□□ -2
SMCHD1-204ENST00000581226 IGHV3-66A0A0C4DH42 116 aa2.57□□□□□ -2
SMCHD1-204ENST00000581226 INS-IGF2F8WCM5 200 aa2.57□□□□□ -2
SMCHD1-204ENST00000581226 CCL21O00585 134 aa2.57□□□□□ -2
SMCHD1-204ENST00000581226 TSPAN12O95859 305 aa2.57□□□□□ -2
SMCHD1-204ENST00000581226 PRPHP41219 470 aa2.57□□□□□ -2
SMCHD1-204ENST00000581226 YAP1P46937 504 aaKnown RBP2.57□□□□□ -2
Retrieved 100 of 20,778 RNA–protein pairs in 33.8 ms