RNA–Protein interactions for RNA: ENST00000578595.1

SS18-209, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 3

Gene SS18, Length 406 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-209ENST00000578595 ANKRD19PQ9H560 264 aa17.03■□□□□ 0.32
SS18-209ENST00000578595 CXorf56Q9H5V9 222 aa17.03■□□□□ 0.32
SS18-209ENST00000578595 FAIMQ9NVQ4 179 aa17.03■□□□□ 0.32
SS18-209ENST00000578595 CISD1Q9NZ45 108 aaKnown RBP17.03■□□□□ 0.32
SS18-209ENST00000578595 GLTPQ9NZD2 209 aa17.03■□□□□ 0.32
SS18-209ENST00000578595 AURKCQ9UQB9 309 aa17.03■□□□□ 0.32
SS18-209ENST00000578595 TMEM5Q9Y2B1 443 aa17.03■□□□□ 0.32
SS18-209ENST00000578595 FLNAP21333 2647 aaKnown RBP17.02■□□□□ 0.32
SS18-209ENST00000578595 SHISA9B4DS77 424 aa17.02■□□□□ 0.32
SS18-209ENST00000578595 ATP6V1G2-DDX39BF2Z307 99 aa17.02■□□□□ 0.32
SS18-209ENST00000578595 ATP6V1B2P21281 511 aa17.02■□□□□ 0.32
SS18-209ENST00000578595 RPL4P36578 427 aaKnown RBP17.02■□□□□ 0.32
SS18-209ENST00000578595 CD47Q08722 323 aa17.02■□□□□ 0.32
SS18-209ENST00000578595 TESK1Q15569 626 aa17.02■□□□□ 0.32
SS18-209ENST00000578595 FXNQ16595 210 aa17.02■□□□□ 0.32
SS18-209ENST00000578595 PODNL1Q6PEZ8 512 aa17.02■□□□□ 0.32
SS18-209ENST00000578595 ARHGAP24Q8N264 748 aa17.02■□□□□ 0.32
SS18-209ENST00000578595 NOXO1Q8NFA2 376 aa17.02■□□□□ 0.32
SS18-209ENST00000578595 LILRB1Q8NHL6 650 aaPredicted RBP17.02■□□□□ 0.32
SS18-209ENST00000578595 SMAP2Q8WU79 429 aaPredicted RBP17.02■□□□□ 0.32
SS18-209ENST00000578595 ASB10Q8WXI3 467 aa17.02■□□□□ 0.32
SS18-209ENST00000578595 NANOS1Q8WY41 292 aaKnown RBP17.02■□□□□ 0.32
SS18-209ENST00000578595 C7orf34Q96L11 122 aa17.02■□□□□ 0.32
SS18-209ENST00000578595 SLC38A2Q96QD8 506 aa17.02■□□□□ 0.32
SS18-209ENST00000578595 STX18Q9P2W9 335 aaKnown RBP17.02■□□□□ 0.32
SS18-209ENST00000578595 HIF3AQ9Y2N7 669 aa17.02■□□□□ 0.32
SS18-209ENST00000578595 ARPC4-TTLL3A0A0A6YYG9 625 aa17.01■□□□□ 0.31
SS18-209ENST00000578595 UBOX5O94941 541 aa17.01■□□□□ 0.31
SS18-209ENST00000578595 GADD45GO95257 159 aa17.01■□□□□ 0.31
SS18-209ENST00000578595 T-ENOLP0DO92 83 aa17.01■□□□□ 0.31
SS18-209ENST00000578595 IDH3GP51553 393 aaPredicted RBP17.01■□□□□ 0.31
SS18-209ENST00000578595 SMIM11AP58511 58 aa17.01■□□□□ 0.31
SS18-209ENST00000578595 CTXN1P60606 82 aa17.01■□□□□ 0.31
SS18-209ENST00000578595 RPS4XP62701 263 aaKnown RBP17.01■□□□□ 0.31
SS18-209ENST00000578595 NKX6-1P78426 367 aaPredicted RBP17.01■□□□□ 0.31
SS18-209ENST00000578595 TSEN54Q7Z6J9 526 aaKnown RBP17.01■□□□□ 0.31
SS18-209ENST00000578595 DHFR2Q86XF0 187 aa17.01■□□□□ 0.31
SS18-209ENST00000578595 ZDHHC21Q8IVQ6 265 aa17.01■□□□□ 0.31
SS18-209ENST00000578595 SLC7A13Q8TCU3 470 aa17.01■□□□□ 0.31
SS18-209ENST00000578595 MAGEE2Q8TD90 523 aaPredicted RBP17.01■□□□□ 0.31
SS18-209ENST00000578595 LIPHQ8WWY8 451 aa17.01■□□□□ 0.31
SS18-209ENST00000578595 TMEM54Q969K7 222 aa17.01■□□□□ 0.31
SS18-209ENST00000578595 LRGUKQ96M69 825 aa17.01■□□□□ 0.31
SS18-209ENST00000578595 ZNF347Q96SE7 839 aa17.01■□□□□ 0.31
SS18-209ENST00000578595 THTPAQ9BU02 230 aa17.01■□□□□ 0.31
SS18-209ENST00000578595 ACTR3BQ9P1U1 418 aa17.01■□□□□ 0.31
SS18-209ENST00000578595 PRPF19Q9UMS4 504 aaKnown RBP17.01■□□□□ 0.31
SS18-209ENST00000578595 MOKQ9UQ07 419 aa17.01■□□□□ 0.31
SS18-209ENST00000578595 CELSR1Q9NYQ6 3014 aa17.01■□□□□ 0.31
SS18-209ENST00000578595 IGHV1-18A0A0C4DH31 117 aa17■□□□□ 0.31
SS18-209ENST00000578595 TRBV4-1A0A0J9YWV2 114 aa17■□□□□ 0.31
SS18-209ENST00000578595 A0A1W2PRQ8 180 aa17■□□□□ 0.31
SS18-209ENST00000578595 ARHGEF9O43307 516 aa17■□□□□ 0.31
SS18-209ENST00000578595 HLA-HP01893 362 aa17■□□□□ 0.31
SS18-209ENST00000578595 CRYAAP02489 173 aa17■□□□□ 0.31
SS18-209ENST00000578595 QDPRP09417 244 aa17■□□□□ 0.31
SS18-209ENST00000578595 PGA4P0DJD7 388 aa17■□□□□ 0.31
SS18-209ENST00000578595 PGA3P0DJD8 388 aa17■□□□□ 0.31
SS18-209ENST00000578595 HOXB1P14653 301 aaPredicted RBP17■□□□□ 0.31
SS18-209ENST00000578595 ACADSP16219 412 aa17■□□□□ 0.31
SS18-209ENST00000578595 SLC9A3P48764 834 aa17■□□□□ 0.31
SS18-209ENST00000578595 ZNF84P51523 738 aa17■□□□□ 0.31
SS18-209ENST00000578595 PIGFQ07326 219 aa17■□□□□ 0.31
SS18-209ENST00000578595 DGCR6Q14129 220 aa17■□□□□ 0.31
SS18-209ENST00000578595 TAF11Q15544 211 aa17■□□□□ 0.31
SS18-209ENST00000578595 C1QTNF12Q5T7M4 302 aa17■□□□□ 0.31
SS18-209ENST00000578595 NHLRC1Q6VVB1 395 aa17■□□□□ 0.31
SS18-209ENST00000578595 SPNS3Q6ZMD2 512 aa17■□□□□ 0.31
SS18-209ENST00000578595 MDP1Q86V88 176 aa17■□□□□ 0.31
SS18-209ENST00000578595 OR4K5Q8NGD3 323 aa17■□□□□ 0.31
SS18-209ENST00000578595 CLPTM1LQ96KA5 538 aa17■□□□□ 0.31
SS18-209ENST00000578595 TNFRSF13CQ96RJ3 184 aa17■□□□□ 0.31
SS18-209ENST00000578595 CXXC4Q9H2H0 198 aa17■□□□□ 0.31
SS18-209ENST00000578595 MUC13Q9H3R2 512 aa17■□□□□ 0.31
SS18-209ENST00000578595 MOV10Q9HCE1 1003 aaKnown RBP17■□□□□ 0.31
SS18-209ENST00000578595 HIVEP1P15822 2718 aa17■□□□□ 0.31
SS18-209ENST00000578595 DHHO43323 396 aa16.99■□□□□ 0.31
SS18-209ENST00000578595 TRMUO75648 421 aaKnown RBP16.99■□□□□ 0.31
SS18-209ENST00000578595 FARS2O95363 451 aaKnown RBP16.99■□□□□ 0.31
SS18-209ENST00000578595 PAX7P23759 505 aa16.99■□□□□ 0.31
SS18-209ENST00000578595 RRM2P31350 389 aa16.99■□□□□ 0.31
SS18-209ENST00000578595 ACVR1BP36896 505 aa16.99■□□□□ 0.31
SS18-209ENST00000578595 FABP6P51161 128 aa16.99■□□□□ 0.31
SS18-209ENST00000578595 RUNX1T1Q06455 604 aa16.99■□□□□ 0.31
SS18-209ENST00000578595 MTX3Q5HYI7 312 aa16.99■□□□□ 0.31
SS18-209ENST00000578595 Q5PR19 223 aa16.99■□□□□ 0.31
SS18-209ENST00000578595 B3GLCTQ6Y288 498 aa16.99■□□□□ 0.31
SS18-209ENST00000578595 CCDC36Q8IYA8 594 aa16.99■□□□□ 0.31
SS18-209ENST00000578595 FBXL14Q8N1E6 418 aa16.99■□□□□ 0.31
SS18-209ENST00000578595 HTRA1Q92743 480 aa16.99■□□□□ 0.31
SS18-209ENST00000578595 TXNIPQ9H3M7 391 aa16.99■□□□□ 0.31
SS18-209ENST00000578595 TMCC3Q9ULS5 477 aa16.99■□□□□ 0.31
SS18-209ENST00000578595 ACANP16112 2415 aa16.98■□□□□ 0.31
SS18-209ENST00000578595 E7EQL1 145 aa16.98■□□□□ 0.31
SS18-209ENST00000578595 GYG2O15488 501 aa16.98■□□□□ 0.31
SS18-209ENST00000578595 ENTPD5O75356 428 aa16.98■□□□□ 0.31
SS18-209ENST00000578595 RAB36O95755 333 aa16.98■□□□□ 0.31
SS18-209ENST00000578595 SEMG1P04279 462 aa16.98■□□□□ 0.31
SS18-209ENST00000578595 SOD3P08294 240 aa16.98■□□□□ 0.31
SS18-209ENST00000578595 CELA3BP08861 270 aa16.98■□□□□ 0.31
Retrieved 100 of 20,778 RNA–protein pairs in 36.8 ms