RNA–Protein interactions for RNA: ENST00000576019.5

VPS53-219, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 3

Gene VPS53, Length 613 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-219ENST00000576019 KIFAP3Q92845 792 aa4.84□□□□□ -1.63
VPS53-219ENST00000576019 NTNG2Q96CW9 530 aa4.84□□□□□ -1.63
VPS53-219ENST00000576019 MBOAT4Q96T53 435 aa4.84□□□□□ -1.63
VPS53-219ENST00000576019 ILKAPQ9H0C8 392 aaPredicted RBP4.84□□□□□ -1.63
VPS53-219ENST00000576019 NMUR1Q9HB89 426 aa4.84□□□□□ -1.63
VPS53-219ENST00000576019 ADGRL4Q9HBW9 690 aa4.84□□□□□ -1.63
VPS53-219ENST00000576019 KLK11Q9UBX7 282 aa4.84□□□□□ -1.63
VPS53-219ENST00000576019 PDE10AQ9Y233 779 aa4.84□□□□□ -1.63
VPS53-219ENST00000576019 A0A1B0GUH1 482 aa4.83□□□□□ -1.64
VPS53-219ENST00000576019 A0A1W2PR80 420 aa4.83□□□□□ -1.64
VPS53-219ENST00000576019 ARL5CA6NH57 179 aa4.83□□□□□ -1.64
VPS53-219ENST00000576019 OR6C65A6NJZ3 312 aa4.83□□□□□ -1.64
VPS53-219ENST00000576019 HIP1O00291 1037 aa4.83□□□□□ -1.64
VPS53-219ENST00000576019 POLR1CO15160 346 aaPredicted RBP4.83□□□□□ -1.64
VPS53-219ENST00000576019 CRLF1O75462 422 aa4.83□□□□□ -1.64
VPS53-219ENST00000576019 APOA1P02647 267 aa4.83□□□□□ -1.64
VPS53-219ENST00000576019 CELA2AP08217 269 aa4.83□□□□□ -1.64
VPS53-219ENST00000576019 IGFBP1P08833 259 aaPredicted RBP4.83□□□□□ -1.64
VPS53-219ENST00000576019 ZNF24P17028 368 aa4.83□□□□□ -1.64
VPS53-219ENST00000576019 KITLGP21583 273 aa4.83□□□□□ -1.64
VPS53-219ENST00000576019 EDNRAP25101 427 aa4.83□□□□□ -1.64
VPS53-219ENST00000576019 STOMP27105 288 aa4.83□□□□□ -1.64
VPS53-219ENST00000576019 HTR1EP28566 365 aa4.83□□□□□ -1.64
VPS53-219ENST00000576019 GPR4P46093 362 aa4.83□□□□□ -1.64
VPS53-219ENST00000576019 NOVP48745 357 aa4.83□□□□□ -1.64
VPS53-219ENST00000576019 STK19P49842 368 aaPredicted RBP4.83□□□□□ -1.64
VPS53-219ENST00000576019 SLC26A2P50443 739 aa4.83□□□□□ -1.64
VPS53-219ENST00000576019 PHEXP78562 749 aa4.83□□□□□ -1.64
VPS53-219ENST00000576019 ELAVL2Q12926 359 aaKnown RBP4.83□□□□□ -1.64
VPS53-219ENST00000576019 EMC2Q15006 297 aa4.83□□□□□ -1.64
VPS53-219ENST00000576019 MTX3Q5HYI7 312 aa4.83□□□□□ -1.64
VPS53-219ENST00000576019 PXDC1Q5TGL8 231 aa4.83□□□□□ -1.64
VPS53-219ENST00000576019 MORN5Q5VZ52 161 aa4.83□□□□□ -1.64
VPS53-219ENST00000576019 OR4D9Q8NGE8 314 aa4.83□□□□□ -1.64
VPS53-219ENST00000576019 DTX3LQ8TDB6 740 aa4.83□□□□□ -1.64
VPS53-219ENST00000576019 ASB9Q96DX5 294 aa4.83□□□□□ -1.64
VPS53-219ENST00000576019 ZNF486Q96H40 463 aaPredicted RBP4.83□□□□□ -1.64
VPS53-219ENST00000576019 PLEKHA8Q96JA3 519 aa4.83□□□□□ -1.64
VPS53-219ENST00000576019 SERAC1Q96JX3 654 aa4.83□□□□□ -1.64
VPS53-219ENST00000576019 SLITRK2Q9H156 845 aa4.83□□□□□ -1.64
VPS53-219ENST00000576019 UGT1A10Q9HAW8 530 aa4.83□□□□□ -1.64
VPS53-219ENST00000576019 SIX2Q9NPC8 291 aa4.83□□□□□ -1.64
VPS53-219ENST00000576019 ESM1Q9NQ30 184 aa4.83□□□□□ -1.64
VPS53-219ENST00000576019 LYARQ9NX58 379 aaKnown RBP4.83□□□□□ -1.64
VPS53-219ENST00000576019 CCL26Q9Y258 94 aa4.83□□□□□ -1.64
VPS53-219ENST00000576019 C15orf41Q9Y2V0 281 aa4.83□□□□□ -1.64
VPS53-219ENST00000576019 OARD1Q9Y530 152 aa4.83□□□□□ -1.64
VPS53-219ENST00000576019 ZANQ9Y493 2812 aa4.83□□□□□ -1.64
VPS53-219ENST00000576019 SCN8AQ9UQD0 1980 aa4.83□□□□□ -1.64
VPS53-219ENST00000576019 NPIPA5A0A0B4J1W7 369 aa4.82□□□□□ -1.64
VPS53-219ENST00000576019 ERICH2A1L162 156 aa4.82□□□□□ -1.64
VPS53-219ENST00000576019 A8MXQ7 604 aa4.82□□□□□ -1.64
VPS53-219ENST00000576019 C1QTNF3-AMACRE9PGA6 284 aa4.82□□□□□ -1.64
VPS53-219ENST00000576019 NPIPA5E9PKD4 350 aa4.82□□□□□ -1.64
VPS53-219ENST00000576019 MKRN2OSH3BPM6 223 aa4.82□□□□□ -1.64
VPS53-219ENST00000576019 CDC123O75794 336 aaPredicted RBP4.82□□□□□ -1.64
VPS53-219ENST00000576019 IGHG3P01860 377 aa4.82□□□□□ -1.64
VPS53-219ENST00000576019 ZNF10P21506 573 aaPredicted RBP4.82□□□□□ -1.64
VPS53-219ENST00000576019 HMOX2P30519 316 aa4.82□□□□□ -1.64
VPS53-219ENST00000576019 LCN1P31025 176 aa4.82□□□□□ -1.64
VPS53-219ENST00000576019 TNFSF9P41273 254 aa4.82□□□□□ -1.64
VPS53-219ENST00000576019 RPL10AP62906 217 aaKnown RBP4.82□□□□□ -1.64
VPS53-219ENST00000576019 ZNF85Q03923 595 aa4.82□□□□□ -1.64
VPS53-219ENST00000576019 ZFP36L1Q07352 338 aaKnown RBP4.82□□□□□ -1.64
VPS53-219ENST00000576019 FHL2Q14192 279 aa4.82□□□□□ -1.64
VPS53-219ENST00000576019 GPR176Q14439 515 aa4.82□□□□□ -1.64
VPS53-219ENST00000576019 STK38Q15208 465 aa4.82□□□□□ -1.64
VPS53-219ENST00000576019 TAB1Q15750 504 aa4.82□□□□□ -1.64
VPS53-219ENST00000576019 SRSF7Q16629 238 aaKnown RBP eCLIP4.82□□□□□ -1.64
VPS53-219ENST00000576019 KRTAP24-1Q3LI83 254 aa4.82□□□□□ -1.64
VPS53-219ENST00000576019 HSP90AA4PQ58FG1 418 aa4.82□□□□□ -1.64
VPS53-219ENST00000576019 CCDC122Q5T0U0 273 aa4.82□□□□□ -1.64
VPS53-219ENST00000576019 WDR25Q64LD2 544 aaPredicted RBP4.82□□□□□ -1.64
VPS53-219ENST00000576019 OR52W1Q6IF63 320 aa4.82□□□□□ -1.64
VPS53-219ENST00000576019 SASS6Q6UVJ0 657 aa4.82□□□□□ -1.64
VPS53-219ENST00000576019 CREB3L2Q70SY1 520 aa4.82□□□□□ -1.64
VPS53-219ENST00000576019 PRSS48Q7RTY5 328 aa4.82□□□□□ -1.64
VPS53-219ENST00000576019 CD302Q8IX05 232 aa4.82□□□□□ -1.64
VPS53-219ENST00000576019 CMTM8Q8IZV2 173 aa4.82□□□□□ -1.64
VPS53-219ENST00000576019 FAM58AQ8N1B3 248 aa4.82□□□□□ -1.64
VPS53-219ENST00000576019 MARVELD2Q8N4S9 558 aa4.82□□□□□ -1.64
VPS53-219ENST00000576019 METTL13Q8N6R0 699 aa4.82□□□□□ -1.64
VPS53-219ENST00000576019 ATP6V0D2Q8N8Y2 350 aa4.82□□□□□ -1.64
VPS53-219ENST00000576019 LRRC20Q8TCA0 184 aa4.82□□□□□ -1.64
VPS53-219ENST00000576019 SMAP2Q8WU79 429 aaPredicted RBP4.82□□□□□ -1.64
VPS53-219ENST00000576019 ZNRF4Q8WWF5 429 aa4.82□□□□□ -1.64
VPS53-219ENST00000576019 DYRK2Q92630 601 aa4.82□□□□□ -1.64
VPS53-219ENST00000576019 TBRG4Q969Z0 631 aaKnown RBP eCLIP4.82□□□□□ -1.64
VPS53-219ENST00000576019 NUS1Q96E22 293 aa4.82□□□□□ -1.64
VPS53-219ENST00000576019 RANBP9Q96S59 729 aa4.82□□□□□ -1.64
VPS53-219ENST00000576019 LLPHQ9BRT6 129 aaKnown RBP4.82□□□□□ -1.64
VPS53-219ENST00000576019 PPA2Q9H2U2 334 aa4.82□□□□□ -1.64
VPS53-219ENST00000576019 NRBP2Q9NSY0 501 aa4.82□□□□□ -1.64
VPS53-219ENST00000576019 BFARQ9NZS9 450 aa4.82□□□□□ -1.64
VPS53-219ENST00000576019 RCOR3Q9P2K3 495 aaPredicted RBP4.82□□□□□ -1.64
VPS53-219ENST00000576019 SMCO2A6NFE2 343 aa4.81□□□□□ -1.64
VPS53-219ENST00000576019 H3BMQ9 156 aa4.81□□□□□ -1.64
VPS53-219ENST00000576019 PHF1O43189 567 aaPredicted RBP4.81□□□□□ -1.64
VPS53-219ENST00000576019 LATO43561 262 aa4.81□□□□□ -1.64
VPS53-219ENST00000576019 ZNF254O75437 659 aa4.81□□□□□ -1.64
Retrieved 100 of 20,778 RNA–protein pairs in 72.8 ms