RNA–Protein interactions for RNA: ENST00000564574.5

CLN3-212, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,159 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-212ENST00000564574 EPHA2P29317 976 aa18.27■□□□□ 0.52
CLN3-212ENST00000564574 NTF4P34130 210 aa18.27■□□□□ 0.52
CLN3-212ENST00000564574 HSPA13P48723 471 aa18.27■□□□□ 0.52
CLN3-212ENST00000564574 SELENOPP49908 381 aa18.27■□□□□ 0.52
CLN3-212ENST00000564574 CAMK2DQ13557 499 aa18.27■□□□□ 0.52
CLN3-212ENST00000564574 KEAP1Q14145 624 aa18.27■□□□□ 0.52
CLN3-212ENST00000564574 MESTQ5EB52 335 aa18.27■□□□□ 0.52
CLN3-212ENST00000564574 TMEM236Q5W0B7 351 aa18.27■□□□□ 0.52
CLN3-212ENST00000564574 TTC23Q5W5X9 447 aa18.27■□□□□ 0.52
CLN3-212ENST00000564574 DHRSXQ8N5I4 330 aa18.27■□□□□ 0.52
CLN3-212ENST00000564574 POMGNT2Q8NAT1 580 aa18.27■□□□□ 0.52
CLN3-212ENST00000564574 NOXO1Q8NFA2 376 aa18.27■□□□□ 0.52
CLN3-212ENST00000564574 RASD2Q96D21 266 aa18.27■□□□□ 0.52
CLN3-212ENST00000564574 STARD4Q96DR4 205 aa18.27■□□□□ 0.52
CLN3-212ENST00000564574 KCNK17Q96T54 332 aa18.27■□□□□ 0.52
CLN3-212ENST00000564574 MRPL13Q9BYD1 178 aaKnown RBP18.27■□□□□ 0.52
CLN3-212ENST00000564574 LINC00470Q9BZP3 86 aa18.27■□□□□ 0.52
CLN3-212ENST00000564574 CMC2Q9NRP2 79 aa18.27■□□□□ 0.52
CLN3-212ENST00000564574 PLSCR4Q9NRQ2 329 aa18.27■□□□□ 0.52
CLN3-212ENST00000564574 PROCRQ9UNN8 238 aa18.27■□□□□ 0.52
CLN3-212ENST00000564574 NBASA2RRP1 2371 aa18.26■□□□□ 0.51
CLN3-212ENST00000564574 LOC100130705A0A1B0GUX0 176 aa18.26■□□□□ 0.51
CLN3-212ENST00000564574 H0YAE9 185 aa18.26■□□□□ 0.51
CLN3-212ENST00000564574 DVL2O14641 736 aa18.26■□□□□ 0.51
CLN3-212ENST00000564574 ARHGEF9O43307 516 aa18.26■□□□□ 0.51
CLN3-212ENST00000564574 CNOT4O95628 575 aaKnown RBP18.26■□□□□ 0.51
CLN3-212ENST00000564574 HIST1H1CP16403 213 aaKnown RBP18.26■□□□□ 0.51
CLN3-212ENST00000564574 GGT2P36268 569 aa18.26■□□□□ 0.51
CLN3-212ENST00000564574 CSNK1A1P48729 337 aa18.26■□□□□ 0.51
CLN3-212ENST00000564574 AQP4P55087 323 aa18.26■□□□□ 0.51
CLN3-212ENST00000564574 CLRN1P58418 232 aa18.26■□□□□ 0.51
CLN3-212ENST00000564574 CDC42P60953 191 aa18.26■□□□□ 0.51
CLN3-212ENST00000564574 KHDRBS1Q07666 443 aaKnown RBP eCLIP18.26■□□□□ 0.51
CLN3-212ENST00000564574 VWA1Q6PCB0 445 aa18.26■□□□□ 0.51
CLN3-212ENST00000564574 IZUMO2Q6UXV1 221 aa18.26■□□□□ 0.51
CLN3-212ENST00000564574 NCCRP1Q6ZVX7 275 aaPredicted RBP18.26■□□□□ 0.51
CLN3-212ENST00000564574 C20orf196Q8IYI0 205 aa18.26■□□□□ 0.51
CLN3-212ENST00000564574 ASB5Q8WWX0 329 aa18.26■□□□□ 0.51
CLN3-212ENST00000564574 HDAC2Q92769 488 aaKnown RBP18.26■□□□□ 0.51
CLN3-212ENST00000564574 TMEM54Q969K7 222 aa18.26■□□□□ 0.51
CLN3-212ENST00000564574 CCDC120Q96HB5 630 aa18.26■□□□□ 0.51
CLN3-212ENST00000564574 PLEKHA8Q96JA3 519 aa18.26■□□□□ 0.51
CLN3-212ENST00000564574 ADI1Q9BV57 179 aa18.26■□□□□ 0.51
CLN3-212ENST00000564574 SLCO5A1Q9H2Y9 848 aa18.26■□□□□ 0.51
CLN3-212ENST00000564574 C12orf49Q9H741 205 aa18.26■□□□□ 0.51
CLN3-212ENST00000564574 B3GAT2Q9NPZ5 323 aa18.26■□□□□ 0.51
CLN3-212ENST00000564574 COQ3Q9NZJ6 369 aa18.26■□□□□ 0.51
CLN3-212ENST00000564574 VSX1Q9NZR4 365 aaPredicted RBP18.26■□□□□ 0.51
CLN3-212ENST00000564574 FOXD3Q9UJU5 478 aaPredicted RBP18.26■□□□□ 0.51
CLN3-212ENST00000564574 NDRG4Q9ULP0 352 aaKnown RBP18.26■□□□□ 0.51
CLN3-212ENST00000564574 RNF6Q9Y252 685 aa18.26■□□□□ 0.51
CLN3-212ENST00000564574 GMPPBQ9Y5P6 360 aa18.26■□□□□ 0.51
CLN3-212ENST00000564574 RIIAD1A6NNX1 92 aa18.25■□□□□ 0.51
CLN3-212ENST00000564574 SURF4O15260 269 aa18.25■□□□□ 0.51
CLN3-212ENST00000564574 RENP00797 406 aa18.25■□□□□ 0.51
CLN3-212ENST00000564574 CGAP01215 116 aa18.25■□□□□ 0.51
CLN3-212ENST00000564574 ZNF3P17036 446 aa18.25■□□□□ 0.51
CLN3-212ENST00000564574 ADARB1P78563 741 aaKnown RBP18.25■□□□□ 0.51
CLN3-212ENST00000564574 ITGADQ13349 1161 aa18.25■□□□□ 0.51
CLN3-212ENST00000564574 SNAPC1Q16533 368 aa18.25■□□□□ 0.51
CLN3-212ENST00000564574 HIST3H3Q16695 136 aa18.25■□□□□ 0.51
CLN3-212ENST00000564574 SLC35F1Q5T1Q4 408 aa18.25■□□□□ 0.51
CLN3-212ENST00000564574 TFAP2EQ6VUC0 442 aa18.25■□□□□ 0.51
CLN3-212ENST00000564574 BTLAQ7Z6A9 289 aa18.25■□□□□ 0.51
CLN3-212ENST00000564574 OR52E2Q8NGJ4 325 aa18.25■□□□□ 0.51
CLN3-212ENST00000564574 OR6N1Q8NGY5 312 aa18.25■□□□□ 0.51
CLN3-212ENST00000564574 OR4K13Q8NH42 304 aa18.25■□□□□ 0.51
CLN3-212ENST00000564574 RBP7Q96R05 134 aa18.25■□□□□ 0.51
CLN3-212ENST00000564574 TVP23BQ9NYZ1 205 aa18.25■□□□□ 0.51
CLN3-212ENST00000564574 ERRFI1Q9UJM3 462 aaPredicted RBP18.25■□□□□ 0.51
CLN3-212ENST00000564574 SLC5A6Q9Y289 635 aa18.25■□□□□ 0.51
CLN3-212ENST00000564574 ALPK2Q86TB3 2170 aa18.24■□□□□ 0.51
CLN3-212ENST00000564574 PRSS37A4D1T9 235 aa18.24■□□□□ 0.51
CLN3-212ENST00000564574 CHRNB4P30926 498 aa18.24■□□□□ 0.51
CLN3-212ENST00000564574 CAPGP40121 348 aa18.24■□□□□ 0.51
CLN3-212ENST00000564574 CDKN2AP42771 156 aaKnown RBP18.24■□□□□ 0.51
CLN3-212ENST00000564574 ADORA2A-AS1P86434 159 aa18.24■□□□□ 0.51
CLN3-212ENST00000564574 RUNX1T1Q06455 604 aa18.24■□□□□ 0.51
CLN3-212ENST00000564574 ZNF362Q5T0B9 420 aaPredicted RBP18.24■□□□□ 0.51
CLN3-212ENST00000564574 THEM4Q5T1C6 240 aa18.24■□□□□ 0.51
CLN3-212ENST00000564574 CARD17Q5XLA6 110 aa18.24■□□□□ 0.51
CLN3-212ENST00000564574 LEG1Q6P5S2 330 aa18.24■□□□□ 0.51
CLN3-212ENST00000564574 PTCHD4Q6ZW05 846 aa18.24■□□□□ 0.51
CLN3-212ENST00000564574 ABHD12BQ7Z5M8 362 aaPredicted RBP18.24■□□□□ 0.51
CLN3-212ENST00000564574 WDFY1Q8IWB7 410 aa18.24■□□□□ 0.51
CLN3-212ENST00000564574 DEPDC4Q8N2C3 294 aa18.24■□□□□ 0.51
CLN3-212ENST00000564574 GPR137CQ8N3F9 429 aa18.24■□□□□ 0.51
CLN3-212ENST00000564574 SLC37A3Q8NCC5 494 aa18.24■□□□□ 0.51
CLN3-212ENST00000564574 CYGBQ8WWM9 190 aa18.24■□□□□ 0.51
CLN3-212ENST00000564574 FN3KQ9H479 309 aa18.24■□□□□ 0.51
CLN3-212ENST00000564574 GLTPQ9NZD2 209 aa18.24■□□□□ 0.51
CLN3-212ENST00000564574 UPB1Q9UBR1 384 aa18.24■□□□□ 0.51
CLN3-212ENST00000564574 FREM1Q5H8C1 2179 aa18.24■□□□□ 0.51
CLN3-212ENST00000564574 SLC22A23A1A5C7 686 aa18.23■□□□□ 0.51
CLN3-212ENST00000564574 MSTNO14793 375 aa18.23■□□□□ 0.51
CLN3-212ENST00000564574 PCYT1AP49585 367 aa18.23■□□□□ 0.51
CLN3-212ENST00000564574 ZNF133P52736 654 aaPredicted RBP18.23■□□□□ 0.51
CLN3-212ENST00000564574 CD47Q08722 323 aa18.23■□□□□ 0.51
CLN3-212ENST00000564574 IL18R1Q13478 541 aa18.23■□□□□ 0.51
CLN3-212ENST00000564574 STK11Q15831 433 aa18.23■□□□□ 0.51
Retrieved 100 of 20,778 RNA–protein pairs in 67.5 ms