RNA–Protein interactions for RNA: ENST00000562078.5

CLK3-206, Transcript of CDC like kinase 3, humanhuman

TSL 2

Gene CLK3, Length 2,455 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-206ENST00000562078 TIMM29Q9BSF4 260 aa12.14□□□□□ -0.47
CLK3-206ENST00000562078 CHST6Q9GZX3 395 aa12.14□□□□□ -0.47
CLK3-206ENST00000562078 PRDM13Q9H4Q3 707 aa12.14□□□□□ -0.47
CLK3-206ENST00000562078 AHSPQ9NZD4 102 aa12.14□□□□□ -0.47
CLK3-206ENST00000562078 A0A0G2JN53 185 aa12.14□□□□□ -0.47
CLK3-206ENST00000562078 hCG_1809904A0A1W2PP81 198 aa12.14□□□□□ -0.47
CLK3-206ENST00000562078 A0A1W2PR64 198 aa12.14□□□□□ -0.47
CLK3-206ENST00000562078 A0A1W2PRV1 198 aa12.14□□□□□ -0.47
CLK3-206ENST00000562078 AP4M1O00189 453 aa12.14□□□□□ -0.47
CLK3-206ENST00000562078 CACNB4O00305 520 aaPredicted RBP12.14□□□□□ -0.47
CLK3-206ENST00000562078 TCAPO15273 167 aa12.14□□□□□ -0.47
CLK3-206ENST00000562078 PLPP2O43688 288 aa12.14□□□□□ -0.47
CLK3-206ENST00000562078 CD2P06729 351 aa12.14□□□□□ -0.47
CLK3-206ENST00000562078 P2RX1P51575 399 aa12.14□□□□□ -0.47
CLK3-206ENST00000562078 OR2B8PP59922 312 aa12.14□□□□□ -0.47
CLK3-206ENST00000562078 STXBP1P61764 594 aaKnown RBP12.14□□□□□ -0.47
CLK3-206ENST00000562078 ELAVL1Q15717 326 aaKnown RBP12.14□□□□□ -0.47
CLK3-206ENST00000562078 RPL13AP3Q6NVV1 102 aa12.14□□□□□ -0.47
CLK3-206ENST00000562078 FAM199XQ6PEV8 388 aaPredicted RBP12.14□□□□□ -0.47
CLK3-206ENST00000562078 FIGNL1Q6PIW4 674 aa12.14□□□□□ -0.47
CLK3-206ENST00000562078 REC114Q7Z4M0 266 aa12.14□□□□□ -0.47
CLK3-206ENST00000562078 C6orf120Q7Z4R8 191 aa12.14□□□□□ -0.47
CLK3-206ENST00000562078 TGIF2LXQ8IUE1 241 aa12.14□□□□□ -0.47
CLK3-206ENST00000562078 RNF113BQ8IZP6 322 aaKnown RBP12.14□□□□□ -0.47
CLK3-206ENST00000562078 GTPBP8Q8N3Z3 284 aaPredicted RBP12.14□□□□□ -0.47
CLK3-206ENST00000562078 RAB42Q8N4Z0 105 aa12.14□□□□□ -0.47
CLK3-206ENST00000562078 OR10H4Q8NGA5 316 aa12.14□□□□□ -0.47
CLK3-206ENST00000562078 OR1J4Q8NGS1 313 aa12.14□□□□□ -0.47
CLK3-206ENST00000562078 SVIPQ8NHG7 77 aa12.14□□□□□ -0.47
CLK3-206ENST00000562078 DUSP19Q8WTR2 217 aa12.14□□□□□ -0.47
CLK3-206ENST00000562078 ARL11Q969Q4 196 aa12.14□□□□□ -0.47
CLK3-206ENST00000562078 ISOC2Q96AB3 205 aa12.14□□□□□ -0.47
CLK3-206ENST00000562078 S100PBPQ96BU1 408 aa12.14□□□□□ -0.47
CLK3-206ENST00000562078 MISP3Q96FF7 219 aa12.14□□□□□ -0.47
CLK3-206ENST00000562078 FAM46AQ96IP4 442 aaKnown RBP12.14□□□□□ -0.47
CLK3-206ENST00000562078 PGLYRP3Q96LB9 341 aa12.14□□□□□ -0.47
CLK3-206ENST00000562078 TSPAN10Q9H1Z9 355 aaPredicted RBP12.14□□□□□ -0.47
CLK3-206ENST00000562078 MED20Q9H944 212 aa12.14□□□□□ -0.47
CLK3-206ENST00000562078 HINT3Q9NQE9 182 aaKnown RBP12.14□□□□□ -0.47
CLK3-206ENST00000562078 RCC2Q9P258 522 aaKnown RBP12.14□□□□□ -0.47
CLK3-206ENST00000562078 C5AR2Q9P296 337 aa12.14□□□□□ -0.47
CLK3-206ENST00000562078 SLC17A4Q9Y2C5 497 aa12.14□□□□□ -0.47
CLK3-206ENST00000562078 ZNF337Q9Y3M9 751 aa12.14□□□□□ -0.47
CLK3-206ENST00000562078 FLRT2O43155 660 aa12.13□□□□□ -0.47
CLK3-206ENST00000562078 NDUFS4O43181 175 aa12.13□□□□□ -0.47
CLK3-206ENST00000562078 YIF1AO95070 293 aa12.13□□□□□ -0.47
CLK3-206ENST00000562078 STATHP02808 62 aa12.13□□□□□ -0.47
CLK3-206ENST00000562078 BSGP35613 385 aa12.13□□□□□ -0.47
CLK3-206ENST00000562078 PTH2RP49190 550 aa12.13□□□□□ -0.47
CLK3-206ENST00000562078 RAB28P51157 221 aa12.13□□□□□ -0.47
CLK3-206ENST00000562078 RPS15P62841 145 aaKnown RBP12.13□□□□□ -0.47
CLK3-206ENST00000562078 CXADRP78310 365 aa12.13□□□□□ -0.47
CLK3-206ENST00000562078 ERV3-1Q14264 604 aa12.13□□□□□ -0.47
CLK3-206ENST00000562078 LY6G6FQ5SQ64 297 aa12.13□□□□□ -0.47
CLK3-206ENST00000562078 STPG1Q5TH74 334 aa12.13□□□□□ -0.47
CLK3-206ENST00000562078 TMEM92Q6UXU6 159 aa12.13□□□□□ -0.47
CLK3-206ENST00000562078 RHOUQ7L0Q8 258 aa12.13□□□□□ -0.47
CLK3-206ENST00000562078 BEST3Q8N1M1 668 aa12.13□□□□□ -0.47
CLK3-206ENST00000562078 CCDC54Q8NEL0 328 aa12.13□□□□□ -0.47
CLK3-206ENST00000562078 RNASE11Q8TAA1 199 aaKnown RBP12.13□□□□□ -0.47
CLK3-206ENST00000562078 NUBPLQ8TB37 319 aa12.13□□□□□ -0.47
CLK3-206ENST00000562078 TEAD3Q99594 435 aa12.13□□□□□ -0.47
CLK3-206ENST00000562078 NRIP2Q9BQI9 281 aa12.13□□□□□ -0.47
CLK3-206ENST00000562078 PIGQQ9BRB3 760 aa12.13□□□□□ -0.47
CLK3-206ENST00000562078 CHRDQ9H2X0 955 aa12.13□□□□□ -0.47
CLK3-206ENST00000562078 KLHL31Q9H511 634 aa12.13□□□□□ -0.47
CLK3-206ENST00000562078 CXorf36Q9H7Y0 433 aa12.13□□□□□ -0.47
CLK3-206ENST00000562078 A0A087WUU8 490 aa12.13□□□□□ -0.47
CLK3-206ENST00000562078 IGKV1-8A0A0C4DH67 115 aa12.13□□□□□ -0.47
CLK3-206ENST00000562078 TCRBV21S2A2A0A5A6 115 aa12.13□□□□□ -0.47
CLK3-206ENST00000562078 DAPL1A0PJW8 107 aa12.13□□□□□ -0.47
CLK3-206ENST00000562078 RNF222A6NCQ9 220 aa12.13□□□□□ -0.47
CLK3-206ENST00000562078 SHISA7A6NL88 538 aa12.13□□□□□ -0.47
CLK3-206ENST00000562078 F5H0A9 414 aaPredicted RBP12.13□□□□□ -0.47
CLK3-206ENST00000562078 MAN2B1O00754 1011 aa12.13□□□□□ -0.47
CLK3-206ENST00000562078 KCNAB3O43448 404 aa12.13□□□□□ -0.47
CLK3-206ENST00000562078 REM1O75628 298 aa12.13□□□□□ -0.47
CLK3-206ENST00000562078 GSTM3P21266 225 aa12.13□□□□□ -0.47
CLK3-206ENST00000562078 CLDN12P56749 244 aa12.13□□□□□ -0.47
CLK3-206ENST00000562078 CSNK1G2P78368 415 aa12.13□□□□□ -0.47
CLK3-206ENST00000562078 HGFACQ04756 655 aa12.13□□□□□ -0.47
CLK3-206ENST00000562078 CBFBQ13951 182 aa12.13□□□□□ -0.47
CLK3-206ENST00000562078 MPPED2Q15777 294 aa12.13□□□□□ -0.47
CLK3-206ENST00000562078 KRBOX4Q5JUW0 171 aa12.13□□□□□ -0.47
CLK3-206ENST00000562078 DPPA2Q7Z7J5 298 aa12.13□□□□□ -0.47
CLK3-206ENST00000562078 OR6T1Q8NGN1 323 aa12.13□□□□□ -0.47
CLK3-206ENST00000562078 OR10R2Q8NGX6 335 aa12.13□□□□□ -0.47
CLK3-206ENST00000562078 GHSRQ92847 366 aa12.13□□□□□ -0.47
CLK3-206ENST00000562078 APOOQ9BUR5 198 aa12.13□□□□□ -0.47
CLK3-206ENST00000562078 FGF22Q9HCT0 170 aa12.13□□□□□ -0.47
CLK3-206ENST00000562078 LHX9Q9NQ69 397 aa12.13□□□□□ -0.47
CLK3-206ENST00000562078 H2AFY2Q9P0M6 372 aaPredicted RBP12.13□□□□□ -0.47
CLK3-206ENST00000562078 PPP4R1LQ9P1A2 415 aa12.13□□□□□ -0.47
CLK3-206ENST00000562078 ZMIZ1Q9ULJ6 1067 aa12.13□□□□□ -0.47
CLK3-206ENST00000562078 MMP17Q9ULZ9 603 aa12.13□□□□□ -0.47
CLK3-206ENST00000562078 TNFSF18Q9UNG2 199 aa12.13□□□□□ -0.47
CLK3-206ENST00000562078 LRP4O75096 1905 aa12.13□□□□□ -0.47
CLK3-206ENST00000562078 BTBD17A6NE02 478 aa12.12□□□□□ -0.47
CLK3-206ENST00000562078 J3QLW9 94 aa12.12□□□□□ -0.47
CLK3-206ENST00000562078 FGF16O43320 207 aa12.12□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 32.3 ms