RNA–Protein interactions for RNA: ENST00000561797.1

VPS39-203, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 3

Gene VPS39, Length 545 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-203ENST00000561797 ZNF566Q969W8 418 aa13.61□□□□□ -0.23
VPS39-203ENST00000561797 FAM162AQ96A26 154 aa13.61□□□□□ -0.23
VPS39-203ENST00000561797 SLC25A44Q96H78 314 aaPredicted RBP13.61□□□□□ -0.23
VPS39-203ENST00000561797 PRRC1Q96M27 445 aa13.61□□□□□ -0.23
VPS39-203ENST00000561797 FOXB1Q99853 325 aa13.61□□□□□ -0.23
VPS39-203ENST00000561797 KCTD14Q9BQ13 255 aaPredicted RBP13.61□□□□□ -0.23
VPS39-203ENST00000561797 FNDC11Q9BVV2 318 aa13.61□□□□□ -0.23
VPS39-203ENST00000561797 BARX1Q9HBU1 254 aaPredicted RBP13.61□□□□□ -0.23
VPS39-203ENST00000561797 MOV10Q9HCE1 1003 aaKnown RBP13.61□□□□□ -0.23
VPS39-203ENST00000561797 GLTPQ9NZD2 209 aa13.61□□□□□ -0.23
VPS39-203ENST00000561797 MTORP42345 2549 aa13.61□□□□□ -0.23
VPS39-203ENST00000561797 A0A1W2PRG6 482 aa13.6□□□□□ -0.23
VPS39-203ENST00000561797 HEXAP06865 529 aa13.6□□□□□ -0.23
VPS39-203ENST00000561797 IFI30P13284 250 aa13.6□□□□□ -0.23
VPS39-203ENST00000561797 PRDX6P30041 224 aa13.6□□□□□ -0.23
VPS39-203ENST00000561797 NUDT6P53370 316 aa13.6□□□□□ -0.23
VPS39-203ENST00000561797 IFI44LQ53G44 452 aa13.6□□□□□ -0.23
VPS39-203ENST00000561797 FAM169BQ8N8A8 192 aa13.6□□□□□ -0.23
VPS39-203ENST00000561797 MOSPD2Q8NHP6 518 aa13.6□□□□□ -0.23
VPS39-203ENST00000561797 HSH2DQ96JZ2 352 aa13.6□□□□□ -0.23
VPS39-203ENST00000561797 NOX3Q9HBY0 568 aa13.6□□□□□ -0.23
VPS39-203ENST00000561797 INIPQ9NRY2 104 aa13.6□□□□□ -0.23
VPS39-203ENST00000561797 CA10Q9NS85 328 aa13.6□□□□□ -0.23
VPS39-203ENST00000561797 B3GNT2Q9NY97 397 aa13.6□□□□□ -0.23
VPS39-203ENST00000561797 ADA2Q9NZK5 511 aa13.6□□□□□ -0.23
VPS39-203ENST00000561797 EGFL7Q9UHF1 273 aa13.6□□□□□ -0.23
VPS39-203ENST00000561797 PMF1-BGLAPU3KQ54 211 aa13.6□□□□□ -0.23
VPS39-203ENST00000561797 MCIDASD6RGH6 385 aa13.59□□□□□ -0.23
VPS39-203ENST00000561797 NDUFAB1O14561 156 aa13.59□□□□□ -0.23
VPS39-203ENST00000561797 QDPRP09417 244 aa13.59□□□□□ -0.23
VPS39-203ENST00000561797 PGA4P0DJD7 388 aa13.59□□□□□ -0.23
VPS39-203ENST00000561797 PGA3P0DJD8 388 aa13.59□□□□□ -0.23
VPS39-203ENST00000561797 BMP4P12644 408 aa13.59□□□□□ -0.23
VPS39-203ENST00000561797 HOXB4P17483 251 aaPredicted RBP13.59□□□□□ -0.23
VPS39-203ENST00000561797 CLRN1P58418 232 aa13.59□□□□□ -0.23
VPS39-203ENST00000561797 LSM11P83369 360 aaKnown RBP eCLIP13.59□□□□□ -0.23
VPS39-203ENST00000561797 MYBPC1Q00872 1141 aa13.59□□□□□ -0.23
VPS39-203ENST00000561797 HGFACQ04756 655 aa13.59□□□□□ -0.23
VPS39-203ENST00000561797 LAPTM4AQ15012 233 aa13.59□□□□□ -0.23
VPS39-203ENST00000561797 GSG1Q2KHT4 349 aa13.59□□□□□ -0.23
VPS39-203ENST00000561797 MST1LQ2TV78 715 aa13.59□□□□□ -0.23
VPS39-203ENST00000561797 LRFN4Q6PJG9 635 aa13.59□□□□□ -0.23
VPS39-203ENST00000561797 ZNF627Q7L945 461 aa13.59□□□□□ -0.23
VPS39-203ENST00000561797 MEX3DQ86XN8 651 aaKnown RBP13.59□□□□□ -0.23
VPS39-203ENST00000561797 RNF148Q8N7C7 305 aa13.59□□□□□ -0.23
VPS39-203ENST00000561797 RBM15BQ8NDT2 890 aaKnown RBP13.59□□□□□ -0.23
VPS39-203ENST00000561797 OR4F15Q8NGB8 312 aa13.59□□□□□ -0.23
VPS39-203ENST00000561797 GEMIN6Q8WXD5 167 aaKnown RBP13.59□□□□□ -0.23
VPS39-203ENST00000561797 NANOS1Q8WY41 292 aaKnown RBP13.59□□□□□ -0.23
VPS39-203ENST00000561797 BPIFA2Q96DR5 249 aa13.59□□□□□ -0.23
VPS39-203ENST00000561797 REG4Q9BYZ8 158 aa13.59□□□□□ -0.23
VPS39-203ENST00000561797 ABCD2Q9UBJ2 740 aa13.59□□□□□ -0.23
VPS39-203ENST00000561797 IGHV2OR16-5A0A0B4J2B6 119 aa13.58□□□□□ -0.24
VPS39-203ENST00000561797 H7C417 338 aa13.58□□□□□ -0.24
VPS39-203ENST00000561797 FFAR1O14842 300 aa13.58□□□□□ -0.24
VPS39-203ENST00000561797 DHHO43323 396 aa13.58□□□□□ -0.24
VPS39-203ENST00000561797 IGF2P01344 180 aa13.58□□□□□ -0.24
VPS39-203ENST00000561797 IGHG1P01857 330 aa13.58□□□□□ -0.24
VPS39-203ENST00000561797 PATE4P0C8F1 98 aa13.58□□□□□ -0.24
VPS39-203ENST00000561797 SERPINF1P36955 418 aa13.58□□□□□ -0.24
VPS39-203ENST00000561797 PTDSS1P48651 473 aaKnown RBP13.58□□□□□ -0.24
VPS39-203ENST00000561797 RAB1AP62820 205 aa13.58□□□□□ -0.24
VPS39-203ENST00000561797 RUNX1T1Q06455 604 aa13.58□□□□□ -0.24
VPS39-203ENST00000561797 TRAM2Q15035 370 aa13.58□□□□□ -0.24
VPS39-203ENST00000561797 ADIPOQQ15848 244 aa13.58□□□□□ -0.24
VPS39-203ENST00000561797 SWI5Q1ZZU3 235 aa13.58□□□□□ -0.24
VPS39-203ENST00000561797 SKA3Q8IX90 412 aa13.58□□□□□ -0.24
VPS39-203ENST00000561797 OFCC1Q8IZS5 231 aa13.58□□□□□ -0.24
VPS39-203ENST00000561797 SYT14Q8NB59 555 aa13.58□□□□□ -0.24
VPS39-203ENST00000561797 LIPHQ8WWY8 451 aa13.58□□□□□ -0.24
VPS39-203ENST00000561797 ASB10Q8WXI3 467 aa13.58□□□□□ -0.24
VPS39-203ENST00000561797 POM121Q96HA1 1249 aa13.58□□□□□ -0.24
VPS39-203ENST00000561797 MS4A3Q96HJ5 214 aa13.58□□□□□ -0.24
VPS39-203ENST00000561797 ZNF347Q96SE7 839 aa13.58□□□□□ -0.24
VPS39-203ENST00000561797 RHNO1Q9BSD3 238 aa13.58□□□□□ -0.24
VPS39-203ENST00000561797 MAN2C1Q9NTJ4 1040 aa13.58□□□□□ -0.24
VPS39-203ENST00000561797 ZNF224Q9NZL3 707 aa13.58□□□□□ -0.24
VPS39-203ENST00000561797 TRMUO75648 421 aaKnown RBP13.57□□□□□ -0.24
VPS39-203ENST00000561797 RAB36O95755 333 aa13.57□□□□□ -0.24
VPS39-203ENST00000561797 OR4A8P0C604 315 aa13.57□□□□□ -0.24
VPS39-203ENST00000561797 SAGP10523 405 aaPredicted RBP13.57□□□□□ -0.24
VPS39-203ENST00000561797 ACADSP16219 412 aa13.57□□□□□ -0.24
VPS39-203ENST00000561797 MAKP20794 623 aa13.57□□□□□ -0.24
VPS39-203ENST00000561797 THBS4P35443 961 aa13.57□□□□□ -0.24
VPS39-203ENST00000561797 GIPRP48546 466 aa13.57□□□□□ -0.24
VPS39-203ENST00000561797 DAP3P51398 398 aaKnown RBP13.57□□□□□ -0.24
VPS39-203ENST00000561797 SNRPD2P62316 118 aaKnown RBP13.57□□□□□ -0.24
VPS39-203ENST00000561797 GLYATQ6IB77 296 aa13.57□□□□□ -0.24
VPS39-203ENST00000561797 KRT80Q6KB66 452 aa13.57□□□□□ -0.24
VPS39-203ENST00000561797 TBPL2Q6SJ96 375 aa13.57□□□□□ -0.24
VPS39-203ENST00000561797 DNM1P46Q6ZS02 220 aa13.57□□□□□ -0.24
VPS39-203ENST00000561797 PIWIL3Q7Z3Z3 882 aaKnown RBP13.57□□□□□ -0.24
VPS39-203ENST00000561797 NRMQ8IXM6 262 aa13.57□□□□□ -0.24
VPS39-203ENST00000561797 SLC22A24Q8N4F4 322 aa13.57□□□□□ -0.24
VPS39-203ENST00000561797 NOXO1Q8NFA2 376 aa13.57□□□□□ -0.24
VPS39-203ENST00000561797 IL17RDQ8NFM7 739 aa13.57□□□□□ -0.24
VPS39-203ENST00000561797 FGFBP3Q8TAT2 258 aa13.57□□□□□ -0.24
VPS39-203ENST00000561797 MCHR2Q969V1 340 aa13.57□□□□□ -0.24
VPS39-203ENST00000561797 ZNF75AQ96N20 296 aa13.57□□□□□ -0.24
VPS39-203ENST00000561797 SH3GL3Q99963 347 aa13.57□□□□□ -0.24
Retrieved 100 of 20,778 RNA–protein pairs in 38.6 ms