RNA–Protein interactions for RNA: ENST00000560628.1

LDLR-214, Transcript of low density lipoprotein receptor, humanhuman

TSL 3

Gene LDLR, Length 535 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-214ENST00000560628 ECSITQ9BQ95 431 aa8.83□□□□□ -1
LDLR-214ENST00000560628 BPESC1Q9GZL8 116 aa8.83□□□□□ -1
LDLR-214ENST00000560628 DYNLRB1Q9NP97 96 aa8.83□□□□□ -1
LDLR-214ENST00000560628 NANSQ9NR45 359 aa8.83□□□□□ -1
LDLR-214ENST00000560628 ARGLU1Q9NWB6 273 aaPredicted RBP8.83□□□□□ -1
LDLR-214ENST00000560628 GLTPQ9NZD2 209 aa8.83□□□□□ -1
LDLR-214ENST00000560628 ZNF224Q9NZL3 707 aa8.83□□□□□ -1
LDLR-214ENST00000560628 CDC42EP3Q9UKI2 254 aa8.83□□□□□ -1
LDLR-214ENST00000560628 SH3GLB1Q9Y371 365 aa8.83□□□□□ -1
LDLR-214ENST00000560628 CMAHPQ9Y471 501 aa8.83□□□□□ -1
LDLR-214ENST00000560628 ANK3Q12955 4377 aaKnown RBP8.83□□□□□ -1
LDLR-214ENST00000560628 YLPM1P49750 1951 aaKnown RBP8.82□□□□□ -1
LDLR-214ENST00000560628 LOC100653049A0A140TA62 436 aa8.82□□□□□ -1
LDLR-214ENST00000560628 LRP5LA4QPB2 252 aa8.82□□□□□ -1
LDLR-214ENST00000560628 LYNX1G3V0Z9 82 aa8.82□□□□□ -1
LDLR-214ENST00000560628 BLOC1S5-TXNDC5H3BN57 136 aa8.82□□□□□ -1
LDLR-214ENST00000560628 KRT34O76011 436 aa8.82□□□□□ -1
LDLR-214ENST00000560628 RAB36O95755 333 aa8.82□□□□□ -1
LDLR-214ENST00000560628 FAM157CP0CG43 387 aa8.82□□□□□ -1
LDLR-214ENST00000560628 LYNX1P0DP58 116 aa8.82□□□□□ -1
LDLR-214ENST00000560628 ZNF35P13682 527 aa8.82□□□□□ -1
LDLR-214ENST00000560628 ZNF14P17017 642 aaPredicted RBP8.82□□□□□ -1
LDLR-214ENST00000560628 TCN1P20061 433 aaPredicted RBP8.82□□□□□ -1
LDLR-214ENST00000560628 GZMKP49863 264 aa8.82□□□□□ -1
LDLR-214ENST00000560628 ZP4Q12836 540 aa8.82□□□□□ -1
LDLR-214ENST00000560628 KLF10Q13118 480 aa8.82□□□□□ -1
LDLR-214ENST00000560628 MMEL1Q495T6 779 aa8.82□□□□□ -1
LDLR-214ENST00000560628 IL17RELQ6ZVW7 336 aa8.82□□□□□ -1
LDLR-214ENST00000560628 CCDC80Q76M96 950 aa8.82□□□□□ -1
LDLR-214ENST00000560628 ZNF627Q7L945 461 aa8.82□□□□□ -1
LDLR-214ENST00000560628 CARM1Q86X55 608 aa8.82□□□□□ -1
LDLR-214ENST00000560628 SNX32Q86XE0 403 aa8.82□□□□□ -1
LDLR-214ENST00000560628 OR6X1Q8NH79 312 aa8.82□□□□□ -1
LDLR-214ENST00000560628 SPATA3Q8NHX4 192 aa8.82□□□□□ -1
LDLR-214ENST00000560628 UBASH3BQ8TF42 649 aa8.82□□□□□ -1
LDLR-214ENST00000560628 NEU4Q8WWR8 484 aaPredicted RBP8.82□□□□□ -1
LDLR-214ENST00000560628 LRRC58Q96CX6 371 aa8.82□□□□□ -1
LDLR-214ENST00000560628 MSI2Q96DH6 328 aaKnown RBP8.82□□□□□ -1
LDLR-214ENST00000560628 SH3GL3Q99963 347 aa8.82□□□□□ -1
LDLR-214ENST00000560628 SYT3Q9BQG1 590 aa8.82□□□□□ -1
LDLR-214ENST00000560628 PRSS27Q9BQR3 290 aa8.82□□□□□ -1
LDLR-214ENST00000560628 SIKE1Q9BRV8 207 aa8.82□□□□□ -1
LDLR-214ENST00000560628 MRPL37Q9BZE1 423 aaKnown RBP8.82□□□□□ -1
LDLR-214ENST00000560628 SHARPINQ9H0F6 387 aa8.82□□□□□ -1
LDLR-214ENST00000560628 TPK1Q9H3S4 243 aa8.82□□□□□ -1
LDLR-214ENST00000560628 CHODLQ9H9P2 273 aa8.82□□□□□ -1
LDLR-214ENST00000560628 MEPEQ9NQ76 525 aaPredicted RBP8.82□□□□□ -1
LDLR-214ENST00000560628 REV1Q9UBZ9 1251 aa8.82□□□□□ -1
LDLR-214ENST00000560628 FZR1Q9UM11 496 aa8.82□□□□□ -1
LDLR-214ENST00000560628 SPEF1Q9Y4P9 236 aa8.82□□□□□ -1
LDLR-214ENST00000560628 MRASO14807 208 aa8.81□□□□□ -1
LDLR-214ENST00000560628 DHHO43323 396 aa8.81□□□□□ -1
LDLR-214ENST00000560628 BCL10O95999 233 aa8.81□□□□□ -1
LDLR-214ENST00000560628 TGFAP01135 160 aa8.81□□□□□ -1
LDLR-214ENST00000560628 F13BP05160 661 aa8.81□□□□□ -1
LDLR-214ENST00000560628 ERCC1P07992 297 aaPredicted RBP8.81□□□□□ -1
LDLR-214ENST00000560628 QDPRP09417 244 aa8.81□□□□□ -1
LDLR-214ENST00000560628 ASAH2BP0C7U1 165 aa8.81□□□□□ -1
LDLR-214ENST00000560628 TROVE2P10155 538 aaKnown RBP eCLIP8.81□□□□□ -1
LDLR-214ENST00000560628 ZNF23P17027 643 aa8.81□□□□□ -1
LDLR-214ENST00000560628 FUT1P19526 365 aa8.81□□□□□ -1
LDLR-214ENST00000560628 ALDH3B1P43353 468 aa8.81□□□□□ -1
LDLR-214ENST00000560628 OR1E2P47887 323 aa8.81□□□□□ -1
LDLR-214ENST00000560628 ARFIP2P53365 341 aa8.81□□□□□ -1
LDLR-214ENST00000560628 SEC24CP53992 1094 aa8.81□□□□□ -1
LDLR-214ENST00000560628 TAS2R41P59536 307 aa8.81□□□□□ -1
LDLR-214ENST00000560628 MYBPC1Q00872 1141 aa8.81□□□□□ -1
LDLR-214ENST00000560628 RUNX1T1Q06455 604 aa8.81□□□□□ -1
LDLR-214ENST00000560628 PIN1Q13526 163 aaPredicted RBP8.81□□□□□ -1
LDLR-214ENST00000560628 GKAP1Q5VSY0 366 aaPredicted RBP8.81□□□□□ -1
LDLR-214ENST00000560628 REP15Q6BDI9 236 aa8.81□□□□□ -1
LDLR-214ENST00000560628 FAM166AQ6J272 317 aa8.81□□□□□ -1
LDLR-214ENST00000560628 DEF8Q6ZN54 512 aa8.81□□□□□ -1
LDLR-214ENST00000560628 PIWIL3Q7Z3Z3 882 aaKnown RBP8.81□□□□□ -1
LDLR-214ENST00000560628 LRP11Q86VZ4 500 aa8.81□□□□□ -1
LDLR-214ENST00000560628 CALHM3Q86XJ0 350 aa8.81□□□□□ -1
LDLR-214ENST00000560628 NKAIN4Q8IVV8 208 aa8.81□□□□□ -1
LDLR-214ENST00000560628 SLC22A24Q8N4F4 322 aa8.81□□□□□ -1
LDLR-214ENST00000560628 SYT14Q8NB59 555 aa8.81□□□□□ -1
LDLR-214ENST00000560628 ZNF540Q8NDQ6 660 aa8.81□□□□□ -1
LDLR-214ENST00000560628 PFN4Q8NHR9 129 aa8.81□□□□□ -1
LDLR-214ENST00000560628 C10orf82Q8WW14 230 aa8.81□□□□□ -1
LDLR-214ENST00000560628 ZNF566Q969W8 418 aa8.81□□□□□ -1
LDLR-214ENST00000560628 MRPL24Q96A35 216 aaKnown RBP8.81□□□□□ -1
LDLR-214ENST00000560628 SLC25A44Q96H78 314 aaPredicted RBP8.81□□□□□ -1
LDLR-214ENST00000560628 MPP4Q96JB8 637 aa8.81□□□□□ -1
LDLR-214ENST00000560628 SH3GL1Q99961 368 aa8.81□□□□□ -1
LDLR-214ENST00000560628 SOX7Q9BT81 388 aa8.81□□□□□ -1
LDLR-214ENST00000560628 PCDHAC1Q9H158 963 aa8.81□□□□□ -1
LDLR-214ENST00000560628 RNF121Q9H920 327 aa8.81□□□□□ -1
LDLR-214ENST00000560628 MYOZ1Q9NP98 299 aaPredicted RBP8.81□□□□□ -1
LDLR-214ENST00000560628 SAR1AQ9NR31 198 aa8.81□□□□□ -1
LDLR-214ENST00000560628 FGFR1OP2Q9NVK5 253 aa8.81□□□□□ -1
LDLR-214ENST00000560628 RIMS3Q9UJD0 308 aa8.81□□□□□ -1
LDLR-214ENST00000560628 ZNF229Q9UJW7 825 aa8.81□□□□□ -1
LDLR-214ENST00000560628 KCNS2Q9ULS6 477 aa8.81□□□□□ -1
LDLR-214ENST00000560628 FBN1P35555 2871 aaKnown RBP8.8□□□□□ -1
LDLR-214ENST00000560628 FXYD1O00168 92 aa8.8□□□□□ -1
LDLR-214ENST00000560628 PHF1O43189 567 aaPredicted RBP8.8□□□□□ -1
LDLR-214ENST00000560628 UBL3O95164 117 aa8.8□□□□□ -1
Retrieved 100 of 20,778 RNA–protein pairs in 25.4 ms