RNA–Protein interactions for RNA: ENST00000560173.1

LDLR-211, Transcript of low density lipoprotein receptor, humanhuman

TSL 3

Gene LDLR, Length 389 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-211ENST00000560173 PIWIL3Q7Z3Z3 882 aaKnown RBP8.21□□□□□ -1.1
LDLR-211ENST00000560173 MEX3DQ86XN8 651 aaKnown RBP8.21□□□□□ -1.1
LDLR-211ENST00000560173 GPR137CQ8N3F9 429 aa8.21□□□□□ -1.1
LDLR-211ENST00000560173 WDR31Q8NA23 367 aa8.21□□□□□ -1.1
LDLR-211ENST00000560173 OR1K1Q8NGR3 316 aa8.21□□□□□ -1.1
LDLR-211ENST00000560173 OR6X1Q8NH79 312 aa8.21□□□□□ -1.1
LDLR-211ENST00000560173 MOSPD2Q8NHP6 518 aa8.21□□□□□ -1.1
LDLR-211ENST00000560173 CANT1Q8WVQ1 401 aa8.21□□□□□ -1.1
LDLR-211ENST00000560173 EME1Q96AY2 570 aa8.21□□□□□ -1.1
LDLR-211ENST00000560173 MUCL1Q96DR8 90 aa8.21□□□□□ -1.1
LDLR-211ENST00000560173 PLPPR2Q96GM1 343 aa8.21□□□□□ -1.1
LDLR-211ENST00000560173 CENPNQ96H22 339 aaPredicted RBP8.21□□□□□ -1.1
LDLR-211ENST00000560173 LRR1Q96L50 414 aa8.21□□□□□ -1.1
LDLR-211ENST00000560173 ADAD1Q96M93 576 aaKnown RBP8.21□□□□□ -1.1
LDLR-211ENST00000560173 TMEM204Q9BSN7 226 aa8.21□□□□□ -1.1
LDLR-211ENST00000560173 C9orf16Q9BUW7 83 aa8.21□□□□□ -1.1
LDLR-211ENST00000560173 NELFAQ9H3P2 528 aa8.21□□□□□ -1.1
LDLR-211ENST00000560173 GPR35Q9HC97 309 aa8.21□□□□□ -1.1
LDLR-211ENST00000560173 NGBQ9NPG2 151 aa8.21□□□□□ -1.1
LDLR-211ENST00000560173 IL1RAPQ9NPH3 570 aa8.21□□□□□ -1.1
LDLR-211ENST00000560173 SLC17A5Q9NRA2 495 aa8.21□□□□□ -1.1
LDLR-211ENST00000560173 INIPQ9NRY2 104 aa8.21□□□□□ -1.1
LDLR-211ENST00000560173 ITGB1BP2Q9UKP3 347 aa8.21□□□□□ -1.1
LDLR-211ENST00000560173 AURKCQ9UQB9 309 aa8.21□□□□□ -1.1
LDLR-211ENST00000560173 DNHD1Q96M86 4753 aa8.21□□□□□ -1.1
LDLR-211ENST00000560173 TRAV27A0A087WT01 109 aa8.2□□□□□ -1.1
LDLR-211ENST00000560173 A0A1W2PR80 420 aa8.2□□□□□ -1.1
LDLR-211ENST00000560173 A0A1W2PRG6 482 aa8.2□□□□□ -1.1
LDLR-211ENST00000560173 NPIPB13A6NJU9 1138 aa8.2□□□□□ -1.1
LDLR-211ENST00000560173 ZNF726A6NNF4 738 aa8.2□□□□□ -1.1
LDLR-211ENST00000560173 EFCAB9A8MZ26 197 aa8.2□□□□□ -1.1
LDLR-211ENST00000560173 NPIPB4C9JG80 1138 aa8.2□□□□□ -1.1
LDLR-211ENST00000560173 M0R3G1 203 aa8.2□□□□□ -1.1
LDLR-211ENST00000560173 CDC42EP2O14613 210 aa8.2□□□□□ -1.1
LDLR-211ENST00000560173 CLOCKO15516 846 aa8.2□□□□□ -1.1
LDLR-211ENST00000560173 F13BP05160 661 aa8.2□□□□□ -1.1
LDLR-211ENST00000560173 SAGP10523 405 aaPredicted RBP8.2□□□□□ -1.1
LDLR-211ENST00000560173 CDH2P19022 906 aaPredicted RBP8.2□□□□□ -1.1
LDLR-211ENST00000560173 MAGEA2P43356 314 aa8.2□□□□□ -1.1
LDLR-211ENST00000560173 GPR4P46093 362 aa8.2□□□□□ -1.1
LDLR-211ENST00000560173 LIMS1P48059 325 aa8.2□□□□□ -1.1
LDLR-211ENST00000560173 CSNK1A1P48729 337 aa8.2□□□□□ -1.1
LDLR-211ENST00000560173 SLC9A3P48764 834 aa8.2□□□□□ -1.1
LDLR-211ENST00000560173 SMIM11AP58511 58 aa8.2□□□□□ -1.1
LDLR-211ENST00000560173 ARF1P84077 181 aaKnown RBP8.2□□□□□ -1.1
LDLR-211ENST00000560173 SPIBQ01892 262 aa8.2□□□□□ -1.1
LDLR-211ENST00000560173 CAMK2DQ13557 499 aa8.2□□□□□ -1.1
LDLR-211ENST00000560173 FHL1Q13642 323 aa8.2□□□□□ -1.1
LDLR-211ENST00000560173 MELKQ14680 651 aa8.2□□□□□ -1.1
LDLR-211ENST00000560173 CEACAM16Q2WEN9 425 aa8.2□□□□□ -1.1
LDLR-211ENST00000560173 TBRG1Q3YBR2 411 aa8.2□□□□□ -1.1
LDLR-211ENST00000560173 HIKESHIQ53FT3 197 aa8.2□□□□□ -1.1
LDLR-211ENST00000560173 NCMAPQ5T1S8 102 aa8.2□□□□□ -1.1
LDLR-211ENST00000560173 C1QTNF12Q5T7M4 302 aa8.2□□□□□ -1.1
LDLR-211ENST00000560173 ZNF704Q6ZNC4 412 aaPredicted RBP8.2□□□□□ -1.1
LDLR-211ENST00000560173 TMPRSS11FQ6ZWK6 438 aa8.2□□□□□ -1.1
LDLR-211ENST00000560173 ZDHHC21Q8IVQ6 265 aa8.2□□□□□ -1.1
LDLR-211ENST00000560173 ADGRG5Q8IZF4 528 aa8.2□□□□□ -1.1
LDLR-211ENST00000560173 OR4K5Q8NGD3 323 aa8.2□□□□□ -1.1
LDLR-211ENST00000560173 OR13C2Q8NGS9 318 aa8.2□□□□□ -1.1
LDLR-211ENST00000560173 OR6N1Q8NGY5 312 aa8.2□□□□□ -1.1
LDLR-211ENST00000560173 OR52N5Q8NH56 324 aa8.2□□□□□ -1.1
LDLR-211ENST00000560173 OR52J3Q8NH60 311 aa8.2□□□□□ -1.1
LDLR-211ENST00000560173 NRG4Q8WWG1 115 aa8.2□□□□□ -1.1
LDLR-211ENST00000560173 BCL2L2Q92843 193 aaPredicted RBP8.2□□□□□ -1.1
LDLR-211ENST00000560173 TMEM54Q969K7 222 aa8.2□□□□□ -1.1
LDLR-211ENST00000560173 ZNF837Q96EG3 531 aaPredicted RBP8.2□□□□□ -1.1
LDLR-211ENST00000560173 NR1H4Q96RI1 486 aaPredicted RBP8.2□□□□□ -1.1
LDLR-211ENST00000560173 ZNF347Q96SE7 839 aa8.2□□□□□ -1.1
LDLR-211ENST00000560173 SEPHS2Q99611 448 aa8.2□□□□□ -1.1
LDLR-211ENST00000560173 OSBPL10Q9BXB5 764 aa8.2□□□□□ -1.1
LDLR-211ENST00000560173 LIME1Q9H400 295 aa8.2□□□□□ -1.1
LDLR-211ENST00000560173 CRLF2Q9HC73 371 aa8.2□□□□□ -1.1
LDLR-211ENST00000560173 B3GAT2Q9NPZ5 323 aa8.2□□□□□ -1.1
LDLR-211ENST00000560173 BATF3Q9NR55 127 aa8.2□□□□□ -1.1
LDLR-211ENST00000560173 RAB26Q9ULW5 256 aa8.2□□□□□ -1.1
LDLR-211ENST00000560173 TMEM5Q9Y2B1 443 aa8.2□□□□□ -1.1
LDLR-211ENST00000560173 AMDHD2Q9Y303 409 aa8.2□□□□□ -1.1
LDLR-211ENST00000560173 MTORP42345 2549 aa8.2□□□□□ -1.1
LDLR-211ENST00000560173 ARPC4-TTLL3A0A0A6YYG9 625 aa8.19□□□□□ -1.1
LDLR-211ENST00000560173 SH3PXD2BA1X283 911 aa8.19□□□□□ -1.1
LDLR-211ENST00000560173 DPRXA6NFQ7 191 aa8.19□□□□□ -1.1
LDLR-211ENST00000560173 GADD45GO95257 159 aa8.19□□□□□ -1.1
LDLR-211ENST00000560173 BCL10O95999 233 aa8.19□□□□□ -1.1
LDLR-211ENST00000560173 PLAUP00749 431 aa8.19□□□□□ -1.1
LDLR-211ENST00000560173 PGA4P0DJD7 388 aa8.19□□□□□ -1.1
LDLR-211ENST00000560173 PGA3P0DJD8 388 aa8.19□□□□□ -1.1
LDLR-211ENST00000560173 ZNF26P17031 533 aaPredicted RBP8.19□□□□□ -1.1
LDLR-211ENST00000560173 PEX2P28328 305 aa8.19□□□□□ -1.1
LDLR-211ENST00000560173 HOXC12P31275 282 aa8.19□□□□□ -1.1
LDLR-211ENST00000560173 RRM2P31350 389 aa8.19□□□□□ -1.1
LDLR-211ENST00000560173 OMPP47874 163 aa8.19□□□□□ -1.1
LDLR-211ENST00000560173 ERFP50548 548 aa8.19□□□□□ -1.1
LDLR-211ENST00000560173 DAP3P51398 398 aaKnown RBP8.19□□□□□ -1.1
LDLR-211ENST00000560173 ZNF83P51522 516 aa8.19□□□□□ -1.1
LDLR-211ENST00000560173 PRPS1P60891 318 aa8.19□□□□□ -1.1
LDLR-211ENST00000560173 RUNX1T1Q06455 604 aa8.19□□□□□ -1.1
LDLR-211ENST00000560173 BSPH1Q075Z2 132 aa8.19□□□□□ -1.1
LDLR-211ENST00000560173 MED21Q13503 144 aa8.19□□□□□ -1.1
LDLR-211ENST00000560173 LAPTM4AQ15012 233 aa8.19□□□□□ -1.1
Retrieved 100 of 20,778 RNA–protein pairs in 49.1 ms