RNA–Protein interactions for RNA: ENST00000557433.5

SHMT2-231, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 1 (best)

Gene SHMT2, Length 1,904 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-231ENST00000557433 SKP1P63208 163 aa14.8□□□□□ -0.04
SHMT2-231ENST00000557433 SRSF4Q08170 494 aaKnown RBP14.8□□□□□ -0.04
SHMT2-231ENST00000557433 ITPRIPL2Q3MIP1 535 aa14.8□□□□□ -0.04
SHMT2-231ENST00000557433 ALG10Q5BKT4 473 aa14.8□□□□□ -0.04
SHMT2-231ENST00000557433 OR7E24Q6IFN5 339 aa14.8□□□□□ -0.04
SHMT2-231ENST00000557433 TBC1D3CQ6IPX1 549 aa14.8□□□□□ -0.04
SHMT2-231ENST00000557433 C11orf88Q6PI97 169 aa14.8□□□□□ -0.04
SHMT2-231ENST00000557433 MCATQ8IVS2 390 aaKnown RBP14.8□□□□□ -0.04
SHMT2-231ENST00000557433 TMEFF1Q8IYR6 380 aa14.8□□□□□ -0.04
SHMT2-231ENST00000557433 TBC1D3Q8IZP1 549 aaPredicted RBP14.8□□□□□ -0.04
SHMT2-231ENST00000557433 OR5T2Q8NGG2 359 aa14.8□□□□□ -0.04
SHMT2-231ENST00000557433 OR52H1Q8NGJ2 320 aa14.8□□□□□ -0.04
SHMT2-231ENST00000557433 OR10G6Q8NH81 332 aa14.8□□□□□ -0.04
SHMT2-231ENST00000557433 ADAMTS18Q8TE60 1221 aa14.8□□□□□ -0.04
SHMT2-231ENST00000557433 ARSGQ96EG1 525 aa14.8□□□□□ -0.04
SHMT2-231ENST00000557433 DCBLD2Q96PD2 775 aa14.8□□□□□ -0.04
SHMT2-231ENST00000557433 EXO5Q9H790 373 aa14.8□□□□□ -0.04
SHMT2-231ENST00000557433 EXOSC3Q9NQT5 275 aaKnown RBP14.8□□□□□ -0.04
SHMT2-231ENST00000557433 LOC100289279A0A1B0GTE1 492 aa14.79□□□□□ -0.04
SHMT2-231ENST00000557433 PSMD9O00233 223 aa14.79□□□□□ -0.04
SHMT2-231ENST00000557433 SLC31A1O15431 190 aa14.79□□□□□ -0.04
SHMT2-231ENST00000557433 RENP00797 406 aa14.79□□□□□ -0.04
SHMT2-231ENST00000557433 PTHLHP12272 177 aa14.79□□□□□ -0.04
SHMT2-231ENST00000557433 ALOX5APP20292 161 aa14.79□□□□□ -0.04
SHMT2-231ENST00000557433 MAGEB1P43366 347 aa14.79□□□□□ -0.04
SHMT2-231ENST00000557433 TNFRSF4P43489 277 aa14.79□□□□□ -0.04
SHMT2-231ENST00000557433 TAS2R19P59542 299 aa14.79□□□□□ -0.04
SHMT2-231ENST00000557433 ZNF345Q14585 488 aa14.79□□□□□ -0.04
SHMT2-231ENST00000557433 RAB11BQ15907 218 aa14.79□□□□□ -0.04
SHMT2-231ENST00000557433 MAMSTRQ6ZN01 415 aa14.79□□□□□ -0.04
SHMT2-231ENST00000557433 YAF2Q8IY57 180 aa14.79□□□□□ -0.04
SHMT2-231ENST00000557433 TMEM229BQ8NBD8 167 aa14.79□□□□□ -0.04
SHMT2-231ENST00000557433 CLEC1AQ8NC01 280 aa14.79□□□□□ -0.04
SHMT2-231ENST00000557433 LSM14AQ8ND56 463 aaKnown RBP14.79□□□□□ -0.04
SHMT2-231ENST00000557433 RCBTB1Q8NDN9 531 aa14.79□□□□□ -0.04
SHMT2-231ENST00000557433 PXT1Q8NFP0 134 aa14.79□□□□□ -0.04
SHMT2-231ENST00000557433 TMEM106AQ96A25 262 aa14.79□□□□□ -0.04
SHMT2-231ENST00000557433 C1QTNF6Q9BXI9 259 aa14.79□□□□□ -0.04
SHMT2-231ENST00000557433 IKZF2Q9UKS7 526 aa14.79□□□□□ -0.04
SHMT2-231ENST00000557433 MRPS33Q9Y291 106 aaKnown RBP14.79□□□□□ -0.04
SHMT2-231ENST00000557433 GOLGA4Q13439 2230 aaKnown RBP14.79□□□□□ -0.04
SHMT2-231ENST00000557433 NUP210LQ5VU65 1888 aa14.79□□□□□ -0.04
SHMT2-231ENST00000557433 IGKV1D-42A0A075B6H8 117 aa14.78□□□□□ -0.04
SHMT2-231ENST00000557433 TRAV8-7A0A075B6U6 113 aa14.78□□□□□ -0.04
SHMT2-231ENST00000557433 A0A0A6YYH2 397 aa14.78□□□□□ -0.04
SHMT2-231ENST00000557433 A6NJ64 397 aa14.78□□□□□ -0.04
SHMT2-231ENST00000557433 SLC17A2O00624 439 aa14.78□□□□□ -0.04
SHMT2-231ENST00000557433 SCAMP1O15126 338 aa14.78□□□□□ -0.04
SHMT2-231ENST00000557433 FOXS1O43638 330 aa14.78□□□□□ -0.04
SHMT2-231ENST00000557433 CDC123O75794 336 aaPredicted RBP14.78□□□□□ -0.04
SHMT2-231ENST00000557433 CD8AP01732 235 aa14.78□□□□□ -0.04
SHMT2-231ENST00000557433 MAS1P04201 325 aa14.78□□□□□ -0.04
SHMT2-231ENST00000557433 TMIGD3P0DMS9 266 aaPredicted RBP14.78□□□□□ -0.04
SHMT2-231ENST00000557433 GRPRP30550 384 aa14.78□□□□□ -0.04
SHMT2-231ENST00000557433 AQP2P41181 271 aa14.78□□□□□ -0.04
SHMT2-231ENST00000557433 CENPAP49450 140 aa14.78□□□□□ -0.04
SHMT2-231ENST00000557433 CTXN1P60606 82 aa14.78□□□□□ -0.04
SHMT2-231ENST00000557433 IGLV3-21P80748 117 aaPredicted RBP14.78□□□□□ -0.04
SHMT2-231ENST00000557433 FAM53BQ14153 422 aa14.78□□□□□ -0.04
SHMT2-231ENST00000557433 GPR18Q14330 331 aa14.78□□□□□ -0.04
SHMT2-231ENST00000557433 C4orf46Q504U0 113 aa14.78□□□□□ -0.04
SHMT2-231ENST00000557433 STEAP1BQ6NZ63 245 aa14.78□□□□□ -0.04
SHMT2-231ENST00000557433 TMEM17Q86X19 198 aa14.78□□□□□ -0.04
SHMT2-231ENST00000557433 OR4N2Q8NGD1 307 aa14.78□□□□□ -0.04
SHMT2-231ENST00000557433 OR51S1Q8NGJ8 323 aa14.78□□□□□ -0.04
SHMT2-231ENST00000557433 GPX8Q8TED1 209 aa14.78□□□□□ -0.04
SHMT2-231ENST00000557433 PHYHIPLQ96FC7 376 aa14.78□□□□□ -0.04
SHMT2-231ENST00000557433 CCDC3Q9BQI4 270 aa14.78□□□□□ -0.04
SHMT2-231ENST00000557433 B3GNT4Q9C0J1 378 aa14.78□□□□□ -0.04
SHMT2-231ENST00000557433 CAPN10Q9HC96 672 aa14.78□□□□□ -0.04
SHMT2-231ENST00000557433 GRHPRQ9UBQ7 328 aa14.78□□□□□ -0.04
SHMT2-231ENST00000557433 ERVK-19Q9WJR5 959 aa14.78□□□□□ -0.04
SHMT2-231ENST00000557433 KLHDC2Q9Y2U9 406 aa14.78□□□□□ -0.04
SHMT2-231ENST00000557433 MPTX1A8MV57 137 aa14.78□□□□□ -0.04
SHMT2-231ENST00000557433 SIX6O95475 246 aa14.78□□□□□ -0.04
SHMT2-231ENST00000557433 NKAIN2Q5VXU1 208 aa14.78□□□□□ -0.04
SHMT2-231ENST00000557433 NPSR1Q6W5P4 371 aa14.78□□□□□ -0.04
SHMT2-231ENST00000557433 DGAT2L6Q6ZPD8 337 aa14.78□□□□□ -0.04
SHMT2-231ENST00000557433 ATG4DQ86TL0 474 aaPredicted RBP14.78□□□□□ -0.04
SHMT2-231ENST00000557433 CCDC36Q8IYA8 594 aa14.78□□□□□ -0.04
SHMT2-231ENST00000557433 C12orf45Q8N5I9 185 aaPredicted RBP14.78□□□□□ -0.04
SHMT2-231ENST00000557433 ASB17Q8WXJ9 295 aa14.78□□□□□ -0.04
SHMT2-231ENST00000557433 C4orf45Q96LM5 186 aa14.78□□□□□ -0.04
SHMT2-231ENST00000557433 SEMA4CQ9C0C4 833 aa14.78□□□□□ -0.04
SHMT2-231ENST00000557433 IFT46Q9NQC8 304 aa14.78□□□□□ -0.04
SHMT2-231ENST00000557433 TRAV18A0A075B6X5 111 aa14.77□□□□□ -0.04
SHMT2-231ENST00000557433 GRXCR1A8MXD5 290 aa14.77□□□□□ -0.04
SHMT2-231ENST00000557433 BLOC1S5-TXNDC5H3BN57 136 aa14.77□□□□□ -0.04
SHMT2-231ENST00000557433 OR2F2O95006 317 aa14.77□□□□□ -0.04
SHMT2-231ENST00000557433 WNT11O96014 354 aa14.77□□□□□ -0.04
SHMT2-231ENST00000557433 ASAH2BP0C7U1 165 aa14.77□□□□□ -0.04
SHMT2-231ENST00000557433 RAB3AP20336 220 aa14.77□□□□□ -0.04
SHMT2-231ENST00000557433 POU3F4P49335 361 aa14.77□□□□□ -0.04
SHMT2-231ENST00000557433 OR2F1Q13607 317 aa14.77□□□□□ -0.04
SHMT2-231ENST00000557433 C2orf68Q2NKX9 166 aa14.77□□□□□ -0.04
SHMT2-231ENST00000557433 KLHL26Q53HC5 615 aa14.77□□□□□ -0.04
SHMT2-231ENST00000557433 EEF1A1P5Q5VTE0 462 aa14.77□□□□□ -0.04
SHMT2-231ENST00000557433 TANGO2Q6ICL3 276 aa14.77□□□□□ -0.04
SHMT2-231ENST00000557433 CFAP77Q6ZQR2 320 aa14.77□□□□□ -0.04
SHMT2-231ENST00000557433 C12orf76Q8N812 135 aaPredicted RBP14.77□□□□□ -0.04
Retrieved 100 of 20,778 RNA–protein pairs in 17.5 ms