RNA–Protein interactions for RNA: ENST00000554872.5

CCDC88C-209, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 4

Gene CCDC88C, Length 1,165 nt, Biotype retained intron, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-209ENST00000554872 CARD17Q5XLA6 110 aa13.93□□□□□ -0.18
CCDC88C-209ENST00000554872 ZNF813Q6ZN06 617 aa13.93□□□□□ -0.18
CCDC88C-209ENST00000554872 DPPA2Q7Z7J5 298 aa13.93□□□□□ -0.18
CCDC88C-209ENST00000554872 MDP1Q86V88 176 aa13.93□□□□□ -0.18
CCDC88C-209ENST00000554872 FAM156AQ8NDB6 213 aa13.93□□□□□ -0.18
CCDC88C-209ENST00000554872 PFN4Q8NHR9 129 aa13.93□□□□□ -0.18
CCDC88C-209ENST00000554872 MRPL13Q9BYD1 178 aaKnown RBP13.93□□□□□ -0.18
CCDC88C-209ENST00000554872 C20orf141Q9NUB4 165 aa13.93□□□□□ -0.18
CCDC88C-209ENST00000554872 ZNF224Q9NZL3 707 aa13.93□□□□□ -0.18
CCDC88C-209ENST00000554872 GDF2Q9UK05 429 aaPredicted RBP13.93□□□□□ -0.18
CCDC88C-209ENST00000554872 POFUT2Q9Y2G5 429 aa13.93□□□□□ -0.18
CCDC88C-209ENST00000554872 HIF3AQ9Y2N7 669 aa13.93□□□□□ -0.18
CCDC88C-209ENST00000554872 IGHV2OR16-5A0A0B4J2B6 119 aa13.92□□□□□ -0.18
CCDC88C-209ENST00000554872 NDUFS7O75251 213 aa13.92□□□□□ -0.18
CCDC88C-209ENST00000554872 PRSS23O95084 383 aa13.92□□□□□ -0.18
CCDC88C-209ENST00000554872 UBL3O95164 117 aa13.92□□□□□ -0.18
CCDC88C-209ENST00000554872 BCL10O95999 233 aa13.92□□□□□ -0.18
CCDC88C-209ENST00000554872 IGHG1P01857 330 aa13.92□□□□□ -0.18
CCDC88C-209ENST00000554872 CSF3P09919 207 aa13.92□□□□□ -0.18
CCDC88C-209ENST00000554872 UMPSP11172 480 aa13.92□□□□□ -0.18
CCDC88C-209ENST00000554872 ZNF14P17017 642 aaPredicted RBP13.92□□□□□ -0.18
CCDC88C-209ENST00000554872 FUT1P19526 365 aa13.92□□□□□ -0.18
CCDC88C-209ENST00000554872 CALCRP30988 508 aa13.92□□□□□ -0.18
CCDC88C-209ENST00000554872 TUBA1BP68363 451 aa13.92□□□□□ -0.18
CCDC88C-209ENST00000554872 TUBA4AP68366 448 aa13.92□□□□□ -0.18
CCDC88C-209ENST00000554872 TAF11Q15544 211 aa13.92□□□□□ -0.18
CCDC88C-209ENST00000554872 ADIPOQQ15848 244 aa13.92□□□□□ -0.18
CCDC88C-209ENST00000554872 FXNQ16595 210 aa13.92□□□□□ -0.18
CCDC88C-209ENST00000554872 GSG1Q2KHT4 349 aa13.92□□□□□ -0.18
CCDC88C-209ENST00000554872 IFI44LQ53G44 452 aa13.92□□□□□ -0.18
CCDC88C-209ENST00000554872 TUBA1AQ71U36 451 aa13.92□□□□□ -0.18
CCDC88C-209ENST00000554872 MYPOPQ86VE0 399 aaPredicted RBP13.92□□□□□ -0.18
CCDC88C-209ENST00000554872 OR10H5Q8NGA6 315 aa13.92□□□□□ -0.18
CCDC88C-209ENST00000554872 TPD52L3Q96J77 140 aa13.92□□□□□ -0.18
CCDC88C-209ENST00000554872 REG4Q9BYZ8 158 aa13.92□□□□□ -0.18
CCDC88C-209ENST00000554872 ANKRD19PQ9H560 264 aa13.92□□□□□ -0.18
CCDC88C-209ENST00000554872 SMURF2Q9HAU4 748 aa13.92□□□□□ -0.18
CCDC88C-209ENST00000554872 SPAG4Q9NPE6 437 aa13.92□□□□□ -0.18
CCDC88C-209ENST00000554872 MAN2C1Q9NTJ4 1040 aa13.92□□□□□ -0.18
CCDC88C-209ENST00000554872 PMF1-BGLAPU3KQ54 211 aa13.92□□□□□ -0.18
CCDC88C-209ENST00000554872 FN1P02751 2386 aaKnown RBP13.91□□□□□ -0.18
CCDC88C-209ENST00000554872 CSPG4Q6UVK1 2322 aa13.91□□□□□ -0.18
CCDC88C-209ENST00000554872 HIVEP2P31629 2446 aa13.91□□□□□ -0.18
CCDC88C-209ENST00000554872 A0A1W2PRG6 482 aa13.91□□□□□ -0.18
CCDC88C-209ENST00000554872 GMNCA6NCL1 334 aa13.91□□□□□ -0.18
CCDC88C-209ENST00000554872 B9A039 149 aa13.91□□□□□ -0.18
CCDC88C-209ENST00000554872 SHOX2O60902 331 aaPredicted RBP13.91□□□□□ -0.18
CCDC88C-209ENST00000554872 SERPINF1P36955 418 aa13.91□□□□□ -0.18
CCDC88C-209ENST00000554872 IDH3GP51553 393 aaPredicted RBP13.91□□□□□ -0.18
CCDC88C-209ENST00000554872 EFNA4P52798 201 aa13.91□□□□□ -0.18
CCDC88C-209ENST00000554872 NUDT6P53370 316 aa13.91□□□□□ -0.18
CCDC88C-209ENST00000554872 HGFACQ04756 655 aa13.91□□□□□ -0.18
CCDC88C-209ENST00000554872 RAB35Q15286 201 aa13.91□□□□□ -0.18
CCDC88C-209ENST00000554872 ARMC4Q5T2S8 1044 aa13.91□□□□□ -0.18
CCDC88C-209ENST00000554872 LRFN4Q6PJG9 635 aa13.91□□□□□ -0.18
CCDC88C-209ENST00000554872 VTCN1Q7Z7D3 282 aa13.91□□□□□ -0.18
CCDC88C-209ENST00000554872 RNF113BQ8IZP6 322 aaKnown RBP13.91□□□□□ -0.18
CCDC88C-209ENST00000554872 NOXO1Q8NFA2 376 aa13.91□□□□□ -0.18
CCDC88C-209ENST00000554872 ASB10Q8WXI3 467 aa13.91□□□□□ -0.18
CCDC88C-209ENST00000554872 KCTD14Q9BQ13 255 aaPredicted RBP13.91□□□□□ -0.18
CCDC88C-209ENST00000554872 PLK3Q9H4B4 646 aa13.91□□□□□ -0.18
CCDC88C-209ENST00000554872 SEC61A2Q9H9S3 476 aa13.91□□□□□ -0.18
CCDC88C-209ENST00000554872 INIPQ9NRY2 104 aa13.91□□□□□ -0.18
CCDC88C-209ENST00000554872 TMEM38BQ9NVV0 291 aa13.91□□□□□ -0.18
CCDC88C-209ENST00000554872 GMPR2Q9P2T1 348 aaKnown RBP13.91□□□□□ -0.18
CCDC88C-209ENST00000554872 ARFGEF3Q5TH69 2177 aa13.9□□□□□ -0.18
CCDC88C-209ENST00000554872 A0A096LNT2 108 aa13.9□□□□□ -0.18
CCDC88C-209ENST00000554872 BLOC1S5-TXNDC5H3BN57 136 aa13.9□□□□□ -0.18
CCDC88C-209ENST00000554872 FFAR1O14842 300 aa13.9□□□□□ -0.18
CCDC88C-209ENST00000554872 GSTA4O15217 222 aa13.9□□□□□ -0.18
CCDC88C-209ENST00000554872 DHHO43323 396 aa13.9□□□□□ -0.18
CCDC88C-209ENST00000554872 SERPINI2O75830 405 aa13.9□□□□□ -0.18
CCDC88C-209ENST00000554872 SEC14L2O76054 403 aa13.9□□□□□ -0.18
CCDC88C-209ENST00000554872 IGHMP01871 453 aa13.9□□□□□ -0.18
CCDC88C-209ENST00000554872 HLA-HP01893 362 aa13.9□□□□□ -0.18
CCDC88C-209ENST00000554872 CELA3BP08861 270 aa13.9□□□□□ -0.18
CCDC88C-209ENST00000554872 OR8G3PP0DMU2 310 aa13.9□□□□□ -0.18
CCDC88C-209ENST00000554872 NR2C1P13056 603 aa13.9□□□□□ -0.18
CCDC88C-209ENST00000554872 B4GALT1P15291 398 aa13.9□□□□□ -0.18
CCDC88C-209ENST00000554872 PPOXP50336 477 aa13.9□□□□□ -0.18
CCDC88C-209ENST00000554872 PSME3P61289 254 aa13.9□□□□□ -0.18
CCDC88C-209ENST00000554872 SNRPD2P62316 118 aaKnown RBP13.9□□□□□ -0.18
CCDC88C-209ENST00000554872 KRTAP1-1Q07627 177 aa13.9□□□□□ -0.18
CCDC88C-209ENST00000554872 TRAM2Q15035 370 aa13.9□□□□□ -0.18
CCDC88C-209ENST00000554872 C10orf128Q5T292 105 aa13.9□□□□□ -0.18
CCDC88C-209ENST00000554872 CPLX4Q7Z7G2 160 aa13.9□□□□□ -0.18
CCDC88C-209ENST00000554872 SLC22A24Q8N4F4 322 aa13.9□□□□□ -0.18
CCDC88C-209ENST00000554872 NMD3Q96D46 503 aaKnown RBP13.9□□□□□ -0.18
CCDC88C-209ENST00000554872 BPIFA2Q96DR5 249 aa13.9□□□□□ -0.18
CCDC88C-209ENST00000554872 NOX3Q9HBY0 568 aa13.9□□□□□ -0.18
CCDC88C-209ENST00000554872 RPS6KA6Q9UK32 745 aa13.9□□□□□ -0.18
CCDC88C-209ENST00000554872 VSTM5A8MXK1 200 aa13.89□□□□□ -0.19
CCDC88C-209ENST00000554872 RNF223E7ERA6 249 aa13.89□□□□□ -0.19
CCDC88C-209ENST00000554872 SMAD7O15105 426 aaKnown RBP13.89□□□□□ -0.19
CCDC88C-209ENST00000554872 F12P00748 615 aaPredicted RBP13.89□□□□□ -0.19
CCDC88C-209ENST00000554872 SERPINA1P01009 418 aa13.89□□□□□ -0.19
CCDC88C-209ENST00000554872 OR4A8P0C604 315 aa13.89□□□□□ -0.19
CCDC88C-209ENST00000554872 ZNF35P13682 527 aa13.89□□□□□ -0.19
CCDC88C-209ENST00000554872 SLC25A16P16260 332 aa13.89□□□□□ -0.19
CCDC88C-209ENST00000554872 AQP2P41181 271 aa13.89□□□□□ -0.19
Retrieved 100 of 20,778 RNA–protein pairs in 48.6 ms