RNA–Protein interactions for RNA: ENST00000553950.5

SHMT2-210, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 2

Gene SHMT2, Length 584 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-210ENST00000553950 OR6K3Q8NGY3 331 aa12.89□□□□□ -0.35
SHMT2-210ENST00000553950 OR4K13Q8NH42 304 aa12.89□□□□□ -0.35
SHMT2-210ENST00000553950 RHOXF1Q8NHV9 184 aa12.89□□□□□ -0.35
SHMT2-210ENST00000553950 FBLIM1Q8WUP2 373 aa12.89□□□□□ -0.35
SHMT2-210ENST00000553950 APH1AQ96BI3 265 aa12.89□□□□□ -0.35
SHMT2-210ENST00000553950 RBP7Q96R05 134 aa12.89□□□□□ -0.35
SHMT2-210ENST00000553950 KCNK17Q96T54 332 aa12.89□□□□□ -0.35
SHMT2-210ENST00000553950 AKAP8LQ9ULX6 646 aaKnown RBP eCLIP12.89□□□□□ -0.35
SHMT2-210ENST00000553950 RNF6Q9Y252 685 aa12.89□□□□□ -0.35
SHMT2-210ENST00000553950 FKBP7Q9Y680 259 aa12.89□□□□□ -0.35
SHMT2-210ENST00000553950 SLC22A31A6NKX4 558 aa12.88□□□□□ -0.35
SHMT2-210ENST00000553950 KDM4EB2RXH2 506 aaPredicted RBP12.88□□□□□ -0.35
SHMT2-210ENST00000553950 E9PLN8 166 aa12.88□□□□□ -0.35
SHMT2-210ENST00000553950 TLX2O43763 284 aaPredicted RBP12.88□□□□□ -0.35
SHMT2-210ENST00000553950 TRMUO75648 421 aaKnown RBP12.88□□□□□ -0.35
SHMT2-210ENST00000553950 CLIC3O95833 236 aa12.88□□□□□ -0.35
SHMT2-210ENST00000553950 TGM6O95932 706 aa12.88□□□□□ -0.35
SHMT2-210ENST00000553950 PGA4P0DJD7 388 aa12.88□□□□□ -0.35
SHMT2-210ENST00000553950 PGA3P0DJD8 388 aa12.88□□□□□ -0.35
SHMT2-210ENST00000553950 KLK2P20151 261 aa12.88□□□□□ -0.35
SHMT2-210ENST00000553950 CXCR4P61073 352 aa12.88□□□□□ -0.35
SHMT2-210ENST00000553950 ISL1P61371 349 aa12.88□□□□□ -0.35
SHMT2-210ENST00000553950 THEM4Q5T1C6 240 aa12.88□□□□□ -0.35
SHMT2-210ENST00000553950 FAM214BQ7L5A3 538 aa12.88□□□□□ -0.35
SHMT2-210ENST00000553950 LSRQ86X29 649 aaPredicted RBP12.88□□□□□ -0.35
SHMT2-210ENST00000553950 CCDC71Q8IV32 467 aaPredicted RBP12.88□□□□□ -0.35
SHMT2-210ENST00000553950 TMEM123Q8N131 208 aa12.88□□□□□ -0.35
SHMT2-210ENST00000553950 GPR137CQ8N3F9 429 aa12.88□□□□□ -0.35
SHMT2-210ENST00000553950 GALNT11Q8NCW6 608 aa12.88□□□□□ -0.35
SHMT2-210ENST00000553950 NPEPL1Q8NDH3 523 aa12.88□□□□□ -0.35
SHMT2-210ENST00000553950 OR6N1Q8NGY5 312 aa12.88□□□□□ -0.35
SHMT2-210ENST00000553950 ZNF385AQ96PM9 386 aaKnown RBP12.88□□□□□ -0.35
SHMT2-210ENST00000553950 OR2M2Q96R28 347 aa12.88□□□□□ -0.35
SHMT2-210ENST00000553950 NMNAT3Q96T66 252 aa12.88□□□□□ -0.35
SHMT2-210ENST00000553950 VKORC1Q9BQB6 163 aa12.88□□□□□ -0.35
SHMT2-210ENST00000553950 SFXN3Q9BWM7 321 aa12.88□□□□□ -0.35
SHMT2-210ENST00000553950 LINC00470Q9BZP3 86 aa12.88□□□□□ -0.35
SHMT2-210ENST00000553950 RACGAP1Q9H0H5 632 aa12.88□□□□□ -0.35
SHMT2-210ENST00000553950 SLCO5A1Q9H2Y9 848 aa12.88□□□□□ -0.35
SHMT2-210ENST00000553950 RASSF1Q9NS23 344 aa12.88□□□□□ -0.35
SHMT2-210ENST00000553950 MOKQ9UQ07 419 aa12.88□□□□□ -0.35
SHMT2-210ENST00000553950 FAM215AQ9Y5M1 114 aa12.88□□□□□ -0.35
SHMT2-210ENST00000553950 BOD1L1Q8NFC6 3051 aa12.88□□□□□ -0.35
SHMT2-210ENST00000553950 ITPR1Q14643 2758 aa12.87□□□□□ -0.35
SHMT2-210ENST00000553950 SLC22A23A1A5C7 686 aa12.87□□□□□ -0.35
SHMT2-210ENST00000553950 EIF4E1BA6NMX2 242 aaKnown RBP12.87□□□□□ -0.35
SHMT2-210ENST00000553950 HSPB2A8KAH6 182 aa12.87□□□□□ -0.35
SHMT2-210ENST00000553950 WISP2O76076 250 aa12.87□□□□□ -0.35
SHMT2-210ENST00000553950 ZNF432O94892 652 aa12.87□□□□□ -0.35
SHMT2-210ENST00000553950 CNOT4O95628 575 aaKnown RBP12.87□□□□□ -0.35
SHMT2-210ENST00000553950 TMIGD3P0DMS9 266 aaPredicted RBP12.87□□□□□ -0.35
SHMT2-210ENST00000553950 CA7P43166 264 aa12.87□□□□□ -0.35
SHMT2-210ENST00000553950 CDH11P55287 796 aa12.87□□□□□ -0.35
SHMT2-210ENST00000553950 EFNB1P98172 346 aa12.87□□□□□ -0.35
SHMT2-210ENST00000553950 GLO1Q04760 184 aa12.87□□□□□ -0.35
SHMT2-210ENST00000553950 POU4F2Q12837 409 aa12.87□□□□□ -0.35
SHMT2-210ENST00000553950 CAMK2DQ13557 499 aa12.87□□□□□ -0.35
SHMT2-210ENST00000553950 GUSBP1Q15486 140 aa12.87□□□□□ -0.35
SHMT2-210ENST00000553950 HSPB2Q16082 182 aa12.87□□□□□ -0.35
SHMT2-210ENST00000553950 MTFR2Q6P444 385 aa12.87□□□□□ -0.35
SHMT2-210ENST00000553950 PLBD1Q6P4A8 553 aa12.87□□□□□ -0.35
SHMT2-210ENST00000553950 NHLRC1Q6VVB1 395 aa12.87□□□□□ -0.35
SHMT2-210ENST00000553950 ATCAYQ86WG3 371 aa12.87□□□□□ -0.35
SHMT2-210ENST00000553950 DOLPP1Q86YN1 238 aa12.87□□□□□ -0.35
SHMT2-210ENST00000553950 TUSC5Q8IXB3 177 aa12.87□□□□□ -0.35
SHMT2-210ENST00000553950 C9orf106Q8NAJ2 232 aa12.87□□□□□ -0.35
SHMT2-210ENST00000553950 HDAC2Q92769 488 aaKnown RBP12.87□□□□□ -0.35
SHMT2-210ENST00000553950 OTULINQ96BN8 352 aa12.87□□□□□ -0.35
SHMT2-210ENST00000553950 IL4I1Q96RQ9 567 aa12.87□□□□□ -0.35
SHMT2-210ENST00000553950 MRPL13Q9BYD1 178 aaKnown RBP12.87□□□□□ -0.35
SHMT2-210ENST00000553950 ULBP2Q9BZM5 246 aa12.87□□□□□ -0.35
SHMT2-210ENST00000553950 SYT4Q9H2B2 425 aa12.87□□□□□ -0.35
SHMT2-210ENST00000553950 HINT3Q9NQE9 182 aaKnown RBP12.87□□□□□ -0.35
SHMT2-210ENST00000553950 RPRD1BQ9NQG5 326 aaKnown RBP12.87□□□□□ -0.35
SHMT2-210ENST00000553950 ZNF226Q9NYT6 803 aa12.87□□□□□ -0.35
SHMT2-210ENST00000553950 GLTPQ9NZD2 209 aa12.87□□□□□ -0.35
SHMT2-210ENST00000553950 WARS2Q9UGM6 360 aaKnown RBP12.87□□□□□ -0.35
SHMT2-210ENST00000553950 ING1Q9UK53 422 aaPredicted RBP12.87□□□□□ -0.35
SHMT2-210ENST00000553950 GPR52Q9Y2T5 361 aa12.87□□□□□ -0.35
SHMT2-210ENST00000553950 RPL36Q9Y3U8 105 aaKnown RBP12.87□□□□□ -0.35
SHMT2-210ENST00000553950 INTS1Q8N201 2190 aaKnown RBP12.87□□□□□ -0.35
SHMT2-210ENST00000553950 KRT33AO76009 404 aa12.86□□□□□ -0.35
SHMT2-210ENST00000553950 CCDC159P0C7I6 412 aa12.86□□□□□ -0.35
SHMT2-210ENST00000553950 GABRB1P18505 474 aa12.86□□□□□ -0.35
SHMT2-210ENST00000553950 HTR1FP30939 366 aa12.86□□□□□ -0.35
SHMT2-210ENST00000553950 CDKN2AP42771 156 aaKnown RBP12.86□□□□□ -0.35
SHMT2-210ENST00000553950 GUCA1AP43080 201 aaPredicted RBP12.86□□□□□ -0.35
SHMT2-210ENST00000553950 ZNF84P51523 738 aa12.86□□□□□ -0.35
SHMT2-210ENST00000553950 RPS7P62081 194 aaKnown RBP12.86□□□□□ -0.35
SHMT2-210ENST00000553950 RBM48Q5RL73 367 aaKnown RBP12.86□□□□□ -0.35
SHMT2-210ENST00000553950 CPOQ8IVL8 374 aa12.86□□□□□ -0.35
SHMT2-210ENST00000553950 C20orf196Q8IYI0 205 aa12.86□□□□□ -0.35
SHMT2-210ENST00000553950 ZNF100Q8IYN0 542 aa12.86□□□□□ -0.35
SHMT2-210ENST00000553950 ZIC4Q8N9L1 334 aa12.86□□□□□ -0.35
SHMT2-210ENST00000553950 CYB561A3Q8NBI2 242 aa12.86□□□□□ -0.35
SHMT2-210ENST00000553950 PROKR2Q8NFJ6 384 aa12.86□□□□□ -0.35
SHMT2-210ENST00000553950 TMEM54Q969K7 222 aa12.86□□□□□ -0.35
SHMT2-210ENST00000553950 TXNDC15Q96J42 360 aa12.86□□□□□ -0.35
SHMT2-210ENST00000553950 TTYH2Q9BSA4 534 aa12.86□□□□□ -0.35
SHMT2-210ENST00000553950 EMC6Q9BV81 110 aa12.86□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 55.5 ms