RNA–Protein interactions for RNA: ENST00000551691.5

LIMA1-208, Transcript of LIM domain and actin binding 1, humanhuman

TSL 3

Gene LIMA1, Length 583 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-208ENST00000551691 A0A1B0GTH9 108 aa3.17□□□□□ -1.9
LIMA1-208ENST00000551691 FAM240BA0A1B0GVZ2 78 aa3.17□□□□□ -1.9
LIMA1-208ENST00000551691 FAM172BPA6NC97 362 aa3.17□□□□□ -1.9
LIMA1-208ENST00000551691 RNF222A6NCQ9 220 aa3.17□□□□□ -1.9
LIMA1-208ENST00000551691 LRIT2A6NDA9 550 aa3.17□□□□□ -1.9
LIMA1-208ENST00000551691 METTL21EPA6NDL7 271 aa3.17□□□□□ -1.9
LIMA1-208ENST00000551691 C9J4A7 227 aa3.17□□□□□ -1.9
LIMA1-208ENST00000551691 H0YL77 283 aa3.17□□□□□ -1.9
LIMA1-208ENST00000551691 M0QYV0 167 aa3.17□□□□□ -1.9
LIMA1-208ENST00000551691 STX7O15400 261 aaKnown RBP3.17□□□□□ -1.9
LIMA1-208ENST00000551691 GPRIN2O60269 458 aa3.17□□□□□ -1.9
LIMA1-208ENST00000551691 LCMT2O60294 686 aaKnown RBP3.17□□□□□ -1.9
LIMA1-208ENST00000551691 LRATO95237 230 aa3.17□□□□□ -1.9
LIMA1-208ENST00000551691 TSPAN12O95859 305 aa3.17□□□□□ -1.9
LIMA1-208ENST00000551691 GOT2P00505 430 aaKnown RBP3.17□□□□□ -1.9
LIMA1-208ENST00000551691 HPRP00739 348 aa3.17□□□□□ -1.9
LIMA1-208ENST00000551691 STATHP02808 62 aa3.17□□□□□ -1.9
LIMA1-208ENST00000551691 ALPLP05186 524 aa3.17□□□□□ -1.9
LIMA1-208ENST00000551691 HSD17B1P14061 328 aa3.17□□□□□ -1.9
LIMA1-208ENST00000551691 CD1DP15813 335 aa3.17□□□□□ -1.9
LIMA1-208ENST00000551691 H2AFXP16104 143 aaPredicted RBP3.17□□□□□ -1.9
LIMA1-208ENST00000551691 XRCC1P18887 633 aaPredicted RBP3.17□□□□□ -1.9
LIMA1-208ENST00000551691 FCGR2CP31995 323 aa3.17□□□□□ -1.9
LIMA1-208ENST00000551691 MAGEA5P43359 124 aa3.17□□□□□ -1.9
LIMA1-208ENST00000551691 GPR1P46091 355 aa3.17□□□□□ -1.9
LIMA1-208ENST00000551691 CAPZBP47756 277 aa3.17□□□□□ -1.9
LIMA1-208ENST00000551691 ZFP36L2P47974 494 aaKnown RBP3.17□□□□□ -1.9
LIMA1-208ENST00000551691 ATP5OP48047 213 aa3.17□□□□□ -1.9
LIMA1-208ENST00000551691 PPT1P50897 306 aa3.17□□□□□ -1.9
LIMA1-208ENST00000551691 AP3M2P53677 418 aa3.17□□□□□ -1.9
LIMA1-208ENST00000551691 SH3BGRP55822 239 aaPredicted RBP3.17□□□□□ -1.9
LIMA1-208ENST00000551691 RHOAP61586 193 aa3.17□□□□□ -1.9
LIMA1-208ENST00000551691 RAD51Q06609 339 aa3.17□□□□□ -1.9
LIMA1-208ENST00000551691 SLC17A1Q14916 467 aa3.17□□□□□ -1.9
LIMA1-208ENST00000551691 CAMK4Q16566 473 aa3.17□□□□□ -1.9
LIMA1-208ENST00000551691 FFAR4Q5NUL3 377 aa3.17□□□□□ -1.9
LIMA1-208ENST00000551691 WLSQ5T9L3 541 aa3.17□□□□□ -1.9
LIMA1-208ENST00000551691 SPINK14Q6IE38 97 aa3.17□□□□□ -1.9
LIMA1-208ENST00000551691 FIP1L1Q6UN15 594 aaKnown RBP3.17□□□□□ -1.9
LIMA1-208ENST00000551691 UTS2BQ765I0 119 aa3.17□□□□□ -1.9
LIMA1-208ENST00000551691 NET1Q7Z628 596 aaPredicted RBP3.17□□□□□ -1.9
LIMA1-208ENST00000551691 TGIF2LXQ8IUE1 241 aa3.17□□□□□ -1.9
LIMA1-208ENST00000551691 SLC22A9Q8IVM8 553 aa3.17□□□□□ -1.9
LIMA1-208ENST00000551691 ANKFN1Q8N957 763 aa3.17□□□□□ -1.9
LIMA1-208ENST00000551691 ZDHHC19Q8WVZ1 309 aaPredicted RBP3.17□□□□□ -1.9
LIMA1-208ENST00000551691 MAIP1Q8WWC4 291 aa3.17□□□□□ -1.9
LIMA1-208ENST00000551691 P3H4Q92791 437 aa3.17□□□□□ -1.9
LIMA1-208ENST00000551691 OSTF1Q92882 214 aa3.17□□□□□ -1.9
LIMA1-208ENST00000551691 SLCO2A1Q92959 643 aa3.17□□□□□ -1.9
LIMA1-208ENST00000551691 LHX4Q969G2 390 aa3.17□□□□□ -1.9
LIMA1-208ENST00000551691 SLC25A36Q96CQ1 311 aa3.17□□□□□ -1.9
LIMA1-208ENST00000551691 IP6K3Q96PC2 410 aa3.17□□□□□ -1.9
LIMA1-208ENST00000551691 SIGLEC12Q96PQ1 595 aa3.17□□□□□ -1.9
LIMA1-208ENST00000551691 GON7Q9BXV9 100 aa3.17□□□□□ -1.9
LIMA1-208ENST00000551691 SLC7A5P2Q9GIP4 190 aa3.17□□□□□ -1.9
LIMA1-208ENST00000551691 HOXD1Q9GZZ0 328 aa3.17□□□□□ -1.9
LIMA1-208ENST00000551691 ATP13A3Q9H7F0 1226 aa3.17□□□□□ -1.9
LIMA1-208ENST00000551691 DDX31Q9H8H2 851 aaKnown RBP3.17□□□□□ -1.9
LIMA1-208ENST00000551691 SLC40A1Q9NP59 571 aa3.17□□□□□ -1.9
LIMA1-208ENST00000551691 STAU2Q9NUL3 570 aaKnown RBP eCLIP3.17□□□□□ -1.9
LIMA1-208ENST00000551691 ETNK2Q9NVF9 386 aa3.17□□□□□ -1.9
LIMA1-208ENST00000551691 DMAC2Q9NW81 257 aa3.17□□□□□ -1.9
LIMA1-208ENST00000551691 TAS2R16Q9NYV7 291 aa3.17□□□□□ -1.9
LIMA1-208ENST00000551691 ZKSCAN7Q9P0L1 754 aaPredicted RBP3.17□□□□□ -1.9
LIMA1-208ENST00000551691 ZNF346Q9UL40 294 aaKnown RBP3.17□□□□□ -1.9
LIMA1-208ENST00000551691 DHRS7Q9Y394 339 aa3.17□□□□□ -1.9
LIMA1-208ENST00000551691 PCLOQ9Y6V0 5065 aa3.16□□□□□ -1.9
LIMA1-208ENST00000551691 NPIPA5A0A0B4J1W7 369 aa3.16□□□□□ -1.9
LIMA1-208ENST00000551691 TSPAN11A1L157 253 aa3.16□□□□□ -1.9
LIMA1-208ENST00000551691 GOLGA8OA6NCC3 632 aa3.16□□□□□ -1.9
LIMA1-208ENST00000551691 HELTA6NFD8 242 aa3.16□□□□□ -1.9
LIMA1-208ENST00000551691 ZSCAN5BA6NJL1 495 aa3.16□□□□□ -1.9
LIMA1-208ENST00000551691 GOLGA8NF8WBI6 632 aa3.16□□□□□ -1.9
LIMA1-208ENST00000551691 FAM72CH0Y354 149 aa3.16□□□□□ -1.9
LIMA1-208ENST00000551691 ACOT8O14734 319 aa3.16□□□□□ -1.9
LIMA1-208ENST00000551691 ARPC3O15145 178 aa3.16□□□□□ -1.9
LIMA1-208ENST00000551691 MED7O43513 233 aa3.16□□□□□ -1.9
LIMA1-208ENST00000551691 KDELR3O43731 214 aa3.16□□□□□ -1.9
LIMA1-208ENST00000551691 OR1F1O43749 312 aa3.16□□□□□ -1.9
LIMA1-208ENST00000551691 PCDH7O60245 1069 aa3.16□□□□□ -1.9
LIMA1-208ENST00000551691 SNNO75324 88 aaPredicted RBP3.16□□□□□ -1.9
LIMA1-208ENST00000551691 STX11O75558 287 aa3.16□□□□□ -1.9
LIMA1-208ENST00000551691 IGSF6O95976 241 aa3.16□□□□□ -1.9
LIMA1-208ENST00000551691 TROVE2P10155 538 aaKnown RBP eCLIP3.16□□□□□ -1.9
LIMA1-208ENST00000551691 PNMTP11086 282 aa3.16□□□□□ -1.9
LIMA1-208ENST00000551691 SLC2A3P11169 496 aa3.16□□□□□ -1.9
LIMA1-208ENST00000551691 PAX1P15863 534 aa3.16□□□□□ -1.9
LIMA1-208ENST00000551691 HNF1AP20823 631 aa3.16□□□□□ -1.9
LIMA1-208ENST00000551691 UQCRC2P22695 453 aa3.16□□□□□ -1.9
LIMA1-208ENST00000551691 MMP11P24347 488 aa3.16□□□□□ -1.9
LIMA1-208ENST00000551691 PPP2R1BP30154 601 aa3.16□□□□□ -1.9
LIMA1-208ENST00000551691 CCKARP32238 428 aa3.16□□□□□ -1.9
LIMA1-208ENST00000551691 RFC3P40938 356 aa3.16□□□□□ -1.9
LIMA1-208ENST00000551691 KPNA2P52292 529 aaKnown RBP3.16□□□□□ -1.9
LIMA1-208ENST00000551691 PEX6Q13608 980 aa3.16□□□□□ -1.9
LIMA1-208ENST00000551691 ZSWIM7Q19AV6 140 aa3.16□□□□□ -1.9
LIMA1-208ENST00000551691 FAM72AQ5TYM5 149 aa3.16□□□□□ -1.9
LIMA1-208ENST00000551691 FAM72DQ6L9T8 149 aa3.16□□□□□ -1.9
LIMA1-208ENST00000551691 PRSS57Q6UWY2 283 aa3.16□□□□□ -1.9
LIMA1-208ENST00000551691 LRRC31Q6UY01 552 aa3.16□□□□□ -1.9
Retrieved 100 of 20,778 RNA–protein pairs in 37 ms