RNA–Protein interactions for RNA: ENST00000546378.1

HOXC11-202, Transcript of homeobox C11, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene HOXC11, Length 3,261 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC11-202ENST00000546378 HRH4Q9H3N8 390 aa13.37□□□□□ -0.27
HOXC11-202ENST00000546378 PCDHB16Q9NRJ7 776 aa13.37□□□□□ -0.27
HOXC11-202ENST00000546378 GIMAP1-GIMAP5A0A087WTJ2 511 aa13.36□□□□□ -0.27
HOXC11-202ENST00000546378 ALOX12BO75342 701 aa13.36□□□□□ -0.27
HOXC11-202ENST00000546378 SERPINA3P01011 423 aa13.36□□□□□ -0.27
HOXC11-202ENST00000546378 CFL1P23528 166 aaKnown RBP13.36□□□□□ -0.27
HOXC11-202ENST00000546378 CTHP32929 405 aa13.36□□□□□ -0.27
HOXC11-202ENST00000546378 MAP3K8P41279 467 aa13.36□□□□□ -0.27
HOXC11-202ENST00000546378 CDKN2AP42771 156 aaKnown RBP13.36□□□□□ -0.27
HOXC11-202ENST00000546378 GRK6P43250 576 aa13.36□□□□□ -0.27
HOXC11-202ENST00000546378 LSSP48449 732 aa13.36□□□□□ -0.27
HOXC11-202ENST00000546378 AP3S2P59780 193 aa13.36□□□□□ -0.27
HOXC11-202ENST00000546378 ADAM8P78325 824 aa13.36□□□□□ -0.27
HOXC11-202ENST00000546378 ZNHIT3Q15649 155 aaPredicted RBP13.36□□□□□ -0.27
HOXC11-202ENST00000546378 EIPR1Q53HC9 387 aa13.36□□□□□ -0.27
HOXC11-202ENST00000546378 C3orf33Q6P1S2 294 aa13.36□□□□□ -0.27
HOXC11-202ENST00000546378 STAC2Q6ZMT1 411 aa13.36□□□□□ -0.27
HOXC11-202ENST00000546378 PM20D2Q8IYS1 436 aa13.36□□□□□ -0.27
HOXC11-202ENST00000546378 GJD3Q8N144 294 aa13.36□□□□□ -0.27
HOXC11-202ENST00000546378 GVQW1Q8N7I0 195 aa13.36□□□□□ -0.27
HOXC11-202ENST00000546378 OR1J2Q8NGS2 313 aa13.36□□□□□ -0.27
HOXC11-202ENST00000546378 GIMAP5Q96F15 307 aa13.36□□□□□ -0.27
HOXC11-202ENST00000546378 KLHL15Q96M94 604 aa13.36□□□□□ -0.27
HOXC11-202ENST00000546378 AMELYQ99218 206 aa13.36□□□□□ -0.27
HOXC11-202ENST00000546378 LYARQ9NX58 379 aaKnown RBP13.36□□□□□ -0.27
HOXC11-202ENST00000546378 KCNG2Q9UJ96 466 aa13.36□□□□□ -0.27
HOXC11-202ENST00000546378 FAM96BQ9Y3D0 163 aa13.36□□□□□ -0.27
HOXC11-202ENST00000546378 MTCH2Q9Y6C9 303 aa13.36□□□□□ -0.27
HOXC11-202ENST00000546378 NBEAQ8NFP9 2946 aa13.36□□□□□ -0.27
HOXC11-202ENST00000546378 KIF26AQ9ULI4 1882 aaPredicted RBP13.36□□□□□ -0.27
HOXC11-202ENST00000546378 CACNA1DQ01668 2161 aa13.36□□□□□ -0.27
HOXC11-202ENST00000546378 B4DGG1 531 aa13.36□□□□□ -0.27
HOXC11-202ENST00000546378 NDUFB2O95178 105 aa13.36□□□□□ -0.27
HOXC11-202ENST00000546378 ZNF205O95201 554 aa13.36□□□□□ -0.27
HOXC11-202ENST00000546378 HLA-AP01891 365 aaKnown RBP13.36□□□□□ -0.27
HOXC11-202ENST00000546378 SLC2A1P11166 492 aa13.36□□□□□ -0.27
HOXC11-202ENST00000546378 PRSS12P56730 875 aa13.36□□□□□ -0.27
HOXC11-202ENST00000546378 DMKNQ6E0U4 476 aaPredicted RBP13.36□□□□□ -0.27
HOXC11-202ENST00000546378 FIGLAQ6QHK4 219 aa13.36□□□□□ -0.27
HOXC11-202ENST00000546378 CLEC9AQ6UXN8 241 aa13.36□□□□□ -0.27
HOXC11-202ENST00000546378 GPR119Q8TDV5 335 aa13.36□□□□□ -0.27
HOXC11-202ENST00000546378 ELSPBP1Q96BH3 223 aa13.36□□□□□ -0.27
HOXC11-202ENST00000546378 C20orf24Q9BUV8 137 aa13.36□□□□□ -0.27
HOXC11-202ENST00000546378 SMIM3Q9BZL3 60 aa13.36□□□□□ -0.27
HOXC11-202ENST00000546378 TCEAL2Q9H3H9 227 aaPredicted RBP13.36□□□□□ -0.27
HOXC11-202ENST00000546378 ELL3Q9HB65 397 aaPredicted RBP13.36□□□□□ -0.27
HOXC11-202ENST00000546378 WASH6PQ9NQA3 447 aa13.36□□□□□ -0.27
HOXC11-202ENST00000546378 C2CD4DB7Z1M9 353 aa13.35□□□□□ -0.27
HOXC11-202ENST00000546378 MPZL1O95297 269 aa13.35□□□□□ -0.27
HOXC11-202ENST00000546378 ZNF806P0C7X5 589 aa13.35□□□□□ -0.27
HOXC11-202ENST00000546378 DRD3P35462 400 aa13.35□□□□□ -0.27
HOXC11-202ENST00000546378 CAPZA1P52907 286 aa13.35□□□□□ -0.27
HOXC11-202ENST00000546378 CD300LDQ6UXZ3 194 aa13.35□□□□□ -0.27
HOXC11-202ENST00000546378 RTN4RL2Q86UN3 420 aa13.35□□□□□ -0.27
HOXC11-202ENST00000546378 STEAP2Q8NFT2 490 aa13.35□□□□□ -0.27
HOXC11-202ENST00000546378 ZNF681Q96N22 645 aa13.35□□□□□ -0.27
HOXC11-202ENST00000546378 SLC38A3Q99624 504 aa13.35□□□□□ -0.27
HOXC11-202ENST00000546378 SLC17A9Q9BYT1 436 aa13.35□□□□□ -0.27
HOXC11-202ENST00000546378 CYB5R1Q9UHQ9 305 aa13.35□□□□□ -0.27
HOXC11-202ENST00000546378 PLCL2Q9UPR0 1127 aa13.35□□□□□ -0.27
HOXC11-202ENST00000546378 PLXNB3Q9ULL4 1909 aa13.35□□□□□ -0.27
HOXC11-202ENST00000546378 C17orf113A0A1B0GUU1 675 aa13.35□□□□□ -0.27
HOXC11-202ENST00000546378 DBIP07108 87 aaKnown RBP13.35□□□□□ -0.27
HOXC11-202ENST00000546378 CELA2BP08218 269 aaPredicted RBP13.35□□□□□ -0.27
HOXC11-202ENST00000546378 ADRA2CP18825 462 aa13.35□□□□□ -0.27
HOXC11-202ENST00000546378 PSMD4P55036 377 aaKnown RBP13.35□□□□□ -0.27
HOXC11-202ENST00000546378 FBXO42Q6P3S6 717 aa13.35□□□□□ -0.27
HOXC11-202ENST00000546378 FAM199XQ6PEV8 388 aaPredicted RBP13.35□□□□□ -0.27
HOXC11-202ENST00000546378 Q7L0L9 218 aa13.35□□□□□ -0.27
HOXC11-202ENST00000546378 FGF11Q92914 225 aa13.35□□□□□ -0.27
HOXC11-202ENST00000546378 ADOQ96SZ5 270 aa13.35□□□□□ -0.27
HOXC11-202ENST00000546378 ZNF416Q9BWM5 594 aa13.35□□□□□ -0.27
HOXC11-202ENST00000546378 ZNF350Q9GZX5 532 aa13.35□□□□□ -0.27
HOXC11-202ENST00000546378 ST6GALNAC2Q9UJ37 374 aa13.35□□□□□ -0.27
HOXC11-202ENST00000546378 KNTC1P50748 2209 aa13.35□□□□□ -0.27
HOXC11-202ENST00000546378 TEX51A0A1B0GUA7 166 aa13.35□□□□□ -0.27
HOXC11-202ENST00000546378 HTR3BO95264 441 aa13.35□□□□□ -0.27
HOXC11-202ENST00000546378 TGIF1Q15583 401 aa13.35□□□□□ -0.27
HOXC11-202ENST00000546378 TMEM196Q5HYL7 178 aa13.35□□□□□ -0.27
HOXC11-202ENST00000546378 AVL9Q8NBF6 648 aa13.35□□□□□ -0.27
HOXC11-202ENST00000546378 TMIEQ8NEW7 156 aa13.35□□□□□ -0.27
HOXC11-202ENST00000546378 OR5D18Q8NGL1 313 aa13.35□□□□□ -0.27
HOXC11-202ENST00000546378 ROBO4Q8WZ75 1007 aa13.35□□□□□ -0.27
HOXC11-202ENST00000546378 GFI1Q99684 422 aa13.35□□□□□ -0.27
HOXC11-202ENST00000546378 SOHLH2Q9NX45 425 aa13.35□□□□□ -0.27
HOXC11-202ENST00000546378 PIPOXQ9P0Z9 390 aa13.35□□□□□ -0.27
HOXC11-202ENST00000546378 GRHPRQ9UBQ7 328 aa13.35□□□□□ -0.27
HOXC11-202ENST00000546378 CD207Q9UJ71 328 aa13.35□□□□□ -0.27
HOXC11-202ENST00000546378 ZNF281Q9Y2X9 895 aa13.35□□□□□ -0.27
HOXC11-202ENST00000546378 PHF3Q92576 2039 aaKnown RBP13.34□□□□□ -0.27
HOXC11-202ENST00000546378 KANTRA0A1W2PQU2 76 aa13.34□□□□□ -0.27
HOXC11-202ENST00000546378 G3V3Q6 166 aa13.34□□□□□ -0.27
HOXC11-202ENST00000546378 RAB3DO95716 219 aa13.34□□□□□ -0.27
HOXC11-202ENST00000546378 ST6GAL1P15907 406 aa13.34□□□□□ -0.27
HOXC11-202ENST00000546378 GPR18Q14330 331 aa13.34□□□□□ -0.27
HOXC11-202ENST00000546378 GLYATL3Q5SZD4 288 aa13.34□□□□□ -0.27
HOXC11-202ENST00000546378 BATF2Q8N1L9 274 aa13.34□□□□□ -0.27
HOXC11-202ENST00000546378 BPIFCQ8NFQ6 507 aa13.34□□□□□ -0.27
HOXC11-202ENST00000546378 OR1E3Q8WZA6 343 aa13.34□□□□□ -0.27
HOXC11-202ENST00000546378 DAPP1Q9UN19 280 aa13.34□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 26.4 ms