RNA–Protein interactions for RNA: ENST00000540475.5

SEMA4D-223, Transcript of semaphorin 4D, human

TSL 3

Gene SEMA4D, Length 826 nt, Biotype protein coding, Subcellular localisation Cytosol .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SEMA4D-223	ENST00000540475	GLTP	Q9NZD2	209 aa		11.32	□□□□□ -0.6
SEMA4D-223	ENST00000540475	CDC42EP3	Q9UKI2	254 aa		11.32	□□□□□ -0.6
SEMA4D-223	ENST00000540475	FBXL3	Q9UKT7	428 aa		11.32	□□□□□ -0.6
SEMA4D-223	ENST00000540475	SLC7A7	Q9UM01	511 aa		11.32	□□□□□ -0.6
SEMA4D-223	ENST00000540475	POFUT2	Q9Y2G5	429 aa		11.32	□□□□□ -0.6
SEMA4D-223	ENST00000540475	ANK2	Q01484	3957 aa		11.32	□□□□□ -0.6
SEMA4D-223	ENST00000540475	BBIP1	A8MTZ0	92 aa		11.31	□□□□□ -0.6
SEMA4D-223	ENST00000540475	hCG_2039718	K7EN88	272 aa		11.31	□□□□□ -0.6
SEMA4D-223	ENST00000540475	SEC14L2	O76054	403 aa		11.31	□□□□□ -0.6
SEMA4D-223	ENST00000540475	UBL3	O95164	117 aa		11.31	□□□□□ -0.6
SEMA4D-223	ENST00000540475	OR6A2	O95222	327 aa		11.31	□□□□□ -0.6
SEMA4D-223	ENST00000540475	STAMBP	O95630	424 aa		11.31	□□□□□ -0.6
SEMA4D-223	ENST00000540475	CH25H	O95992	272 aa		11.31	□□□□□ -0.6
SEMA4D-223	ENST00000540475	MT-ND1	P03886	318 aa		11.31	□□□□□ -0.6
SEMA4D-223	ENST00000540475	FAM157C	P0CG43	387 aa		11.31	□□□□□ -0.6
SEMA4D-223	ENST00000540475	PGA4	P0DJD7	388 aa		11.31	□□□□□ -0.6
SEMA4D-223	ENST00000540475	PGA3	P0DJD8	388 aa		11.31	□□□□□ -0.6
SEMA4D-223	ENST00000540475	THRB	P10828	461 aa		11.31	□□□□□ -0.6
SEMA4D-223	ENST00000540475	RBM34	P42696	430 aa	Known RBP	11.31	□□□□□ -0.6
SEMA4D-223	ENST00000540475	CSNK1A1	P48729	337 aa		11.31	□□□□□ -0.6
SEMA4D-223	ENST00000540475	GZMK	P49863	264 aa		11.31	□□□□□ -0.6
SEMA4D-223	ENST00000540475	BID	P55957	195 aa		11.31	□□□□□ -0.6
SEMA4D-223	ENST00000540475	RAB1A	P62820	205 aa		11.31	□□□□□ -0.6
SEMA4D-223	ENST00000540475	DAG1	Q14118	895 aa		11.31	□□□□□ -0.6
SEMA4D-223	ENST00000540475	MSMP	Q1L6U9	139 aa		11.31	□□□□□ -0.6
SEMA4D-223	ENST00000540475	RABL3	Q5HYI8	236 aa		11.31	□□□□□ -0.6
SEMA4D-223	ENST00000540475	ERICH5	Q6P6B1	374 aa		11.31	□□□□□ -0.6
SEMA4D-223	ENST00000540475	VHLL	Q6RSH7	139 aa		11.31	□□□□□ -0.6
SEMA4D-223	ENST00000540475	ZNF584	Q8IVC4	421 aa		11.31	□□□□□ -0.6
SEMA4D-223	ENST00000540475	SKA3	Q8IX90	412 aa		11.31	□□□□□ -0.6
SEMA4D-223	ENST00000540475	C10orf53	Q8N6V4	93 aa		11.31	□□□□□ -0.6
SEMA4D-223	ENST00000540475	ANKS4B	Q8N8V4	417 aa		11.31	□□□□□ -0.6
SEMA4D-223	ENST00000540475	OR6N1	Q8NGY5	312 aa		11.31	□□□□□ -0.6
SEMA4D-223	ENST00000540475	VANGL1	Q8TAA9	524 aa	Predicted RBP	11.31	□□□□□ -0.6
SEMA4D-223	ENST00000540475	SLC26A7	Q8TE54	656 aa		11.31	□□□□□ -0.6
SEMA4D-223	ENST00000540475	ZNF566	Q969W8	418 aa		11.31	□□□□□ -0.6
SEMA4D-223	ENST00000540475	VRK1	Q99986	396 aa	Predicted RBP	11.31	□□□□□ -0.6
SEMA4D-223	ENST00000540475	PIMREG	Q9BSJ6	248 aa		11.31	□□□□□ -0.6
SEMA4D-223	ENST00000540475	MRPL13	Q9BYD1	178 aa	Known RBP	11.31	□□□□□ -0.6
SEMA4D-223	ENST00000540475	BAG5	Q9UL15	447 aa		11.31	□□□□□ -0.6
SEMA4D-223	ENST00000540475	IGHV4-61	A0A0C4DH41	118 aa		11.3	□□□□□ -0.6
SEMA4D-223	ENST00000540475	NPIPB13	A6NJU9	1138 aa		11.3	□□□□□ -0.6
SEMA4D-223	ENST00000540475	NPIPB4	C9JG80	1138 aa		11.3	□□□□□ -0.6
SEMA4D-223	ENST00000540475	C11orf98	E9PRG8	122 aa		11.3	□□□□□ -0.6
SEMA4D-223	ENST00000540475	MGRN1	O60291	552 aa		11.3	□□□□□ -0.6
SEMA4D-223	ENST00000540475	OR5F1	O95221	314 aa		11.3	□□□□□ -0.6
SEMA4D-223	ENST00000540475	IFNA2	P01563	188 aa		11.3	□□□□□ -0.6
SEMA4D-223	ENST00000540475	SERPINA5	P05154	406 aa		11.3	□□□□□ -0.6
SEMA4D-223	ENST00000540475	TACSTD2	P09758	323 aa		11.3	□□□□□ -0.6
SEMA4D-223	ENST00000540475	B4GALT1	P15291	398 aa		11.3	□□□□□ -0.6
SEMA4D-223	ENST00000540475	ZNF23	P17027	643 aa		11.3	□□□□□ -0.6
SEMA4D-223	ENST00000540475	ARFIP2	P53365	341 aa		11.3	□□□□□ -0.6
SEMA4D-223	ENST00000540475	NPRL3	Q12980	569 aa		11.3	□□□□□ -0.6
SEMA4D-223	ENST00000540475	SNTB2	Q13425	540 aa	Known RBP	11.3	□□□□□ -0.6
SEMA4D-223	ENST00000540475	REP15	Q6BDI9	236 aa		11.3	□□□□□ -0.6
SEMA4D-223	ENST00000540475	SPATA21	Q7Z572	469 aa		11.3	□□□□□ -0.6
SEMA4D-223	ENST00000540475	CARM1	Q86X55	608 aa		11.3	□□□□□ -0.6
SEMA4D-223	ENST00000540475	ZNF786	Q8N393	782 aa		11.3	□□□□□ -0.6
SEMA4D-223	ENST00000540475	SVOPL	Q8N434	492 aa		11.3	□□□□□ -0.6
SEMA4D-223	ENST00000540475	SLC22A24	Q8N4F4	322 aa		11.3	□□□□□ -0.6
SEMA4D-223	ENST00000540475	C10orf82	Q8WW14	230 aa		11.3	□□□□□ -0.6
SEMA4D-223	ENST00000540475	MRPL24	Q96A35	216 aa	Known RBP	11.3	□□□□□ -0.6
SEMA4D-223	ENST00000540475	C1orf159	Q96HA4	380 aa		11.3	□□□□□ -0.6
SEMA4D-223	ENST00000540475	MS4A3	Q96HJ5	214 aa		11.3	□□□□□ -0.6
SEMA4D-223	ENST00000540475	KCNK17	Q96T54	332 aa		11.3	□□□□□ -0.6
SEMA4D-223	ENST00000540475	ECSIT	Q9BQ95	431 aa		11.3	□□□□□ -0.6
SEMA4D-223	ENST00000540475	CCDC134	Q9H6E4	229 aa		11.3	□□□□□ -0.6
SEMA4D-223	ENST00000540475	TMEM38B	Q9NVV0	291 aa		11.3	□□□□□ -0.6
SEMA4D-223	ENST00000540475	LPAR3	Q9UBY5	353 aa		11.3	□□□□□ -0.6
SEMA4D-223	ENST00000540475	CMAHP	Q9Y471	501 aa		11.3	□□□□□ -0.6
SEMA4D-223	ENST00000540475	HTR3E	A5X5Y0	456 aa		11.29	□□□□□ -0.6
SEMA4D-223	ENST00000540475	SLC22A2	O15244	555 aa		11.29	□□□□□ -0.6
SEMA4D-223	ENST00000540475	DHH	O43323	396 aa		11.29	□□□□□ -0.6
SEMA4D-223	ENST00000540475	RNF13	O43567	381 aa		11.29	□□□□□ -0.6
SEMA4D-223	ENST00000540475	ENTPD5	O75356	428 aa		11.29	□□□□□ -0.6
SEMA4D-223	ENST00000540475	HIST1H2AB	P04908	130 aa		11.29	□□□□□ -0.6
SEMA4D-223	ENST00000540475	VIM	P08670	466 aa	Known RBP	11.29	□□□□□ -0.6
SEMA4D-223	ENST00000540475	OR8G3P	P0DMU2	310 aa		11.29	□□□□□ -0.6
SEMA4D-223	ENST00000540475	TROVE2	P10155	538 aa	Known RBP eCLIP	11.29	□□□□□ -0.6
SEMA4D-223	ENST00000540475	CD79A	P11912	226 aa		11.29	□□□□□ -0.6
SEMA4D-223	ENST00000540475	DAO	P14920	347 aa		11.29	□□□□□ -0.6
SEMA4D-223	ENST00000540475	CAPZA2	P47755	286 aa		11.29	□□□□□ -0.6
SEMA4D-223	ENST00000540475	GIPR	P48546	466 aa		11.29	□□□□□ -0.6
SEMA4D-223	ENST00000540475	PIGF	Q07326	219 aa		11.29	□□□□□ -0.6
SEMA4D-223	ENST00000540475	RIN1	Q13671	783 aa		11.29	□□□□□ -0.6
SEMA4D-223	ENST00000540475	MAPRE2	Q15555	327 aa		11.29	□□□□□ -0.6
SEMA4D-223	ENST00000540475	KRT80	Q6KB66	452 aa		11.29	□□□□□ -0.6
SEMA4D-223	ENST00000540475	HIST3H2A	Q7L7L0	130 aa		11.29	□□□□□ -0.6
SEMA4D-223	ENST00000540475	DPPA2	Q7Z7J5	298 aa		11.29	□□□□□ -0.6
SEMA4D-223	ENST00000540475	NKAIN4	Q8IVV8	208 aa		11.29	□□□□□ -0.6
SEMA4D-223	ENST00000540475	CDK20	Q8IZL9	346 aa		11.29	□□□□□ -0.6
SEMA4D-223	ENST00000540475	ZCCHC24	Q8N2G6	241 aa	Known RBP	11.29	□□□□□ -0.6
SEMA4D-223	ENST00000540475	PCYOX1L	Q8NBM8	494 aa		11.29	□□□□□ -0.6
SEMA4D-223	ENST00000540475	FGFBP3	Q8TAT2	258 aa		11.29	□□□□□ -0.6
SEMA4D-223	ENST00000540475	HIST1H2AC	Q93077	130 aa		11.29	□□□□□ -0.6
SEMA4D-223	ENST00000540475	MSI2	Q96DH6	328 aa	Known RBP	11.29	□□□□□ -0.6
SEMA4D-223	ENST00000540475	MRPL37	Q9BZE1	423 aa	Known RBP	11.29	□□□□□ -0.6
SEMA4D-223	ENST00000540475	RIMS3	Q9UJD0	308 aa		11.29	□□□□□ -0.6
SEMA4D-223	ENST00000540475	SH3GLB1	Q9Y371	365 aa		11.29	□□□□□ -0.6
SEMA4D-223	ENST00000540475	SPEF1	Q9Y4P9	236 aa		11.29	□□□□□ -0.6

Retrieved 100 of 20,778 RNA–protein pairs in 36.6 ms