RNA–Protein interactions for RNA: ENST00000531480.2

CPSF1-206, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

TSL 3

Gene CPSF1, Length 789 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-206ENST00000531480 NMD3Q96D46 503 aaKnown RBP12.73□□□□□ -0.37
CPSF1-206ENST00000531480 MUS81Q96NY9 551 aa12.73□□□□□ -0.37
CPSF1-206ENST00000531480 EMC6Q9BV81 110 aa12.73□□□□□ -0.37
CPSF1-206ENST00000531480 Q9H521 79 aa12.73□□□□□ -0.37
CPSF1-206ENST00000531480 IL20Q9NYY1 176 aa12.73□□□□□ -0.37
CPSF1-206ENST00000531480 MGAT4BQ9UQ53 548 aa12.73□□□□□ -0.37
CPSF1-206ENST00000531480 ORC6Q9Y5N6 252 aa12.73□□□□□ -0.37
CPSF1-206ENST00000531480 HRNRQ86YZ3 2850 aaPredicted RBP12.72□□□□□ -0.37
CPSF1-206ENST00000531480 FAM221AA4D161 298 aa12.72□□□□□ -0.37
CPSF1-206ENST00000531480 TUBAL3A6NHL2 446 aa12.72□□□□□ -0.37
CPSF1-206ENST00000531480 ZNF726A6NNF4 738 aa12.72□□□□□ -0.37
CPSF1-206ENST00000531480 H0YJX3 145 aa12.72□□□□□ -0.37
CPSF1-206ENST00000531480 TXNDC12O95881 172 aa12.72□□□□□ -0.37
CPSF1-206ENST00000531480 TP53P04637 393 aaPredicted RBP12.72□□□□□ -0.37
CPSF1-206ENST00000531480 EPXP11678 715 aa12.72□□□□□ -0.37
CPSF1-206ENST00000531480 PTDSS1P48651 473 aaKnown RBP12.72□□□□□ -0.37
CPSF1-206ENST00000531480 CTXN1P60606 82 aa12.72□□□□□ -0.37
CPSF1-206ENST00000531480 RPL27P61353 136 aaKnown RBP12.72□□□□□ -0.37
CPSF1-206ENST00000531480 RUNX1T1Q06455 604 aa12.72□□□□□ -0.37
CPSF1-206ENST00000531480 COX10Q12887 443 aa12.72□□□□□ -0.37
CPSF1-206ENST00000531480 DAZAP2Q15038 168 aaPredicted RBP12.72□□□□□ -0.37
CPSF1-206ENST00000531480 GABRA6Q16445 453 aa12.72□□□□□ -0.37
CPSF1-206ENST00000531480 RFX4Q33E94 735 aa12.72□□□□□ -0.37
CPSF1-206ENST00000531480 PHYHD1Q5SRE7 291 aa12.72□□□□□ -0.37
CPSF1-206ENST00000531480 SHQ1Q6PI26 577 aaKnown RBP12.72□□□□□ -0.37
CPSF1-206ENST00000531480 SEZ6L2Q6UXD5 910 aa12.72□□□□□ -0.37
CPSF1-206ENST00000531480 DPY19L2P2Q6ZN68 376 aa12.72□□□□□ -0.37
CPSF1-206ENST00000531480 RASSF6Q6ZTQ3 369 aa12.72□□□□□ -0.37
CPSF1-206ENST00000531480 SSX8Q7RTT4 187 aa12.72□□□□□ -0.37
CPSF1-206ENST00000531480 P2RY8Q86VZ1 359 aa12.72□□□□□ -0.37
CPSF1-206ENST00000531480 UBE2J2Q8N2K1 259 aa12.72□□□□□ -0.37
CPSF1-206ENST00000531480 C17orf78Q8N4C9 275 aa12.72□□□□□ -0.37
CPSF1-206ENST00000531480 AQP11Q8NBQ7 271 aa12.72□□□□□ -0.37
CPSF1-206ENST00000531480 OR10G2Q8NGC3 310 aa12.72□□□□□ -0.37
CPSF1-206ENST00000531480 GIPC3Q8TF64 312 aa12.72□□□□□ -0.37
CPSF1-206ENST00000531480 ZNF566Q969W8 418 aa12.72□□□□□ -0.37
CPSF1-206ENST00000531480 WFIKKN1Q96NZ8 548 aa12.72□□□□□ -0.37
CPSF1-206ENST00000531480 TSPAN32Q96QS1 320 aa12.72□□□□□ -0.37
CPSF1-206ENST00000531480 KCNK17Q96T54 332 aa12.72□□□□□ -0.37
CPSF1-206ENST00000531480 OR52D1Q9H346 318 aa12.72□□□□□ -0.37
CPSF1-206ENST00000531480 GPR35Q9HC97 309 aa12.72□□□□□ -0.37
CPSF1-206ENST00000531480 CRIM1Q9NZV1 1036 aa12.72□□□□□ -0.37
CPSF1-206ENST00000531480 UPB1Q9UBR1 384 aa12.72□□□□□ -0.37
CPSF1-206ENST00000531480 ENOPH1Q9UHY7 261 aa12.72□□□□□ -0.37
CPSF1-206ENST00000531480 ZNF346Q9UL40 294 aaKnown RBP12.72□□□□□ -0.37
CPSF1-206ENST00000531480 FBN2P35556 2912 aa12.72□□□□□ -0.37
CPSF1-206ENST00000531480 SH3D21A4FU49 640 aa12.71□□□□□ -0.37
CPSF1-206ENST00000531480 ZNF587BE7ETH6 402 aa12.71□□□□□ -0.37
CPSF1-206ENST00000531480 CASQ2O14958 399 aaPredicted RBP12.71□□□□□ -0.37
CPSF1-206ENST00000531480 ARPC3O15145 178 aa12.71□□□□□ -0.37
CPSF1-206ENST00000531480 TRMUO75648 421 aaKnown RBP12.71□□□□□ -0.37
CPSF1-206ENST00000531480 SERPINI2O75830 405 aa12.71□□□□□ -0.37
CPSF1-206ENST00000531480 LYZL6O75951 148 aa12.71□□□□□ -0.37
CPSF1-206ENST00000531480 GOSR1O95249 250 aa12.71□□□□□ -0.37
CPSF1-206ENST00000531480 IGHG1P01857 330 aa12.71□□□□□ -0.37
CPSF1-206ENST00000531480 THBDP07204 575 aa12.71□□□□□ -0.37
CPSF1-206ENST00000531480 COX6B1P14854 86 aa12.71□□□□□ -0.37
CPSF1-206ENST00000531480 ACADSP16219 412 aa12.71□□□□□ -0.37
CPSF1-206ENST00000531480 CDH2P19022 906 aaPredicted RBP12.71□□□□□ -0.37
CPSF1-206ENST00000531480 GSTM3P21266 225 aa12.71□□□□□ -0.37
CPSF1-206ENST00000531480 KIR2DL3P43628 341 aa12.71□□□□□ -0.37
CPSF1-206ENST00000531480 SH3BGRP55822 239 aaPredicted RBP12.71□□□□□ -0.37
CPSF1-206ENST00000531480 CAMK2DQ13557 499 aa12.71□□□□□ -0.37
CPSF1-206ENST00000531480 MELKQ14680 651 aa12.71□□□□□ -0.37
CPSF1-206ENST00000531480 TIMM23BQ5SRD1 257 aa12.71□□□□□ -0.37
CPSF1-206ENST00000531480 GPR139Q6DWJ6 353 aa12.71□□□□□ -0.37
CPSF1-206ENST00000531480 OR7E24Q6IFN5 339 aa12.71□□□□□ -0.37
CPSF1-206ENST00000531480 HMBOX1Q6NT76 420 aa12.71□□□□□ -0.37
CPSF1-206ENST00000531480 RPL13AP3Q6NVV1 102 aa12.71□□□□□ -0.37
CPSF1-206ENST00000531480 LRFN4Q6PJG9 635 aa12.71□□□□□ -0.37
CPSF1-206ENST00000531480 ZBTB49Q6ZSB9 765 aa12.71□□□□□ -0.37
CPSF1-206ENST00000531480 BHLHA15Q7RTS1 189 aaPredicted RBP12.71□□□□□ -0.37
CPSF1-206ENST00000531480 ZNF295-AS1Q8N0V1 137 aa12.71□□□□□ -0.37
CPSF1-206ENST00000531480 ARIH2OSQ8N7S6 290 aa12.71□□□□□ -0.37
CPSF1-206ENST00000531480 ICA1LQ8NDH6 482 aa12.71□□□□□ -0.37
CPSF1-206ENST00000531480 MAGEE2Q8TD90 523 aaPredicted RBP12.71□□□□□ -0.37
CPSF1-206ENST00000531480 S100PBPQ96BU1 408 aa12.71□□□□□ -0.37
CPSF1-206ENST00000531480 C14orf79Q96F83 325 aa12.71□□□□□ -0.37
CPSF1-206ENST00000531480 ALKBH3Q96Q83 286 aaPredicted RBP12.71□□□□□ -0.37
CPSF1-206ENST00000531480 FEVQ99581 238 aa12.71□□□□□ -0.37
CPSF1-206ENST00000531480 NIPSNAP1Q9BPW8 284 aa12.71□□□□□ -0.37
CPSF1-206ENST00000531480 ALG12Q9BV10 488 aa12.71□□□□□ -0.37
CPSF1-206ENST00000531480 KATNB1Q9BVA0 655 aa12.71□□□□□ -0.37
CPSF1-206ENST00000531480 NDEL1Q9GZM8 345 aa12.71□□□□□ -0.37
CPSF1-206ENST00000531480 ACTR6Q9GZN1 396 aa12.71□□□□□ -0.37
CPSF1-206ENST00000531480 NELFAQ9H3P2 528 aa12.71□□□□□ -0.37
CPSF1-206ENST00000531480 GLTPQ9NZD2 209 aa12.71□□□□□ -0.37
CPSF1-206ENST00000531480 NDRG3Q9UGV2 375 aa12.71□□□□□ -0.37
CPSF1-206ENST00000531480 CDH10Q9Y6N8 788 aa12.71□□□□□ -0.37
CPSF1-206ENST00000531480 NOTCH2Q04721 2471 aa12.7□□□□□ -0.38
CPSF1-206ENST00000531480 APCP25054 2843 aa12.7□□□□□ -0.38
CPSF1-206ENST00000531480 A6NIZ1 184 aa12.7□□□□□ -0.38
CPSF1-206ENST00000531480 OR5H1A6NKK0 313 aa12.7□□□□□ -0.38
CPSF1-206ENST00000531480 ZNF99A8MXY4 864 aaPredicted RBP12.7□□□□□ -0.38
CPSF1-206ENST00000531480 G3V2T6 193 aa12.7□□□□□ -0.38
CPSF1-206ENST00000531480 IMPA2O14732 288 aa12.7□□□□□ -0.38
CPSF1-206ENST00000531480 AHCYL1O43865 530 aa12.7□□□□□ -0.38
CPSF1-206ENST00000531480 ANXA8P13928 327 aa12.7□□□□□ -0.38
CPSF1-206ENST00000531480 SDHAP31040 664 aa12.7□□□□□ -0.38
CPSF1-206ENST00000531480 CSNK1A1P48729 337 aa12.7□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 40.6 ms