RNA–Protein interactions for RNA: ENST00000527797.6

VPS28-208, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 5

Gene VPS28, Length 1,609 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-208ENST00000527797 ACBD7Q8N6N7 88 aa18.77■□□□□ 0.6
VPS28-208ENST00000527797 CPNE4Q96A23 557 aaPredicted RBP18.77■□□□□ 0.6
VPS28-208ENST00000527797 DGCR14Q96DF8 476 aaKnown RBP18.77■□□□□ 0.6
VPS28-208ENST00000527797 CNN2Q99439 309 aaKnown RBP18.77■□□□□ 0.6
VPS28-208ENST00000527797 SF3B5Q9BWJ5 86 aaKnown RBP18.77■□□□□ 0.6
VPS28-208ENST00000527797 TSPAN10Q9H1Z9 355 aaPredicted RBP18.77■□□□□ 0.6
VPS28-208ENST00000527797 RERGLQ9H628 205 aa18.77■□□□□ 0.6
VPS28-208ENST00000527797 KLHL13Q9P2N7 655 aa18.77■□□□□ 0.6
VPS28-208ENST00000527797 RAXQ9Y2V3 346 aa18.77■□□□□ 0.6
VPS28-208ENST00000527797 CEPT1Q9Y6K0 416 aa18.77■□□□□ 0.6
VPS28-208ENST00000527797 NCKAP5O14513 1909 aa18.77■□□□□ 0.59
VPS28-208ENST00000527797 AKAP13Q12802 2813 aa18.76■□□□□ 0.59
VPS28-208ENST00000527797 SPTBN2O15020 2390 aa18.76■□□□□ 0.59
VPS28-208ENST00000527797 NPIPA2E9PIF3 369 aa18.76■□□□□ 0.59
VPS28-208ENST00000527797 NPIPA3F8WFD2 350 aa18.76■□□□□ 0.59
VPS28-208ENST00000527797 DCTN6O00399 190 aa18.76■□□□□ 0.59
VPS28-208ENST00000527797 SMAD9O15198 467 aaKnown RBP18.76■□□□□ 0.59
VPS28-208ENST00000527797 AHCYL1O43865 530 aa18.76■□□□□ 0.59
VPS28-208ENST00000527797 TRMUO75648 421 aaKnown RBP18.76■□□□□ 0.59
VPS28-208ENST00000527797 CRABP1P29762 137 aa18.76■□□□□ 0.59
VPS28-208ENST00000527797 SRYQ05066 204 aa18.76■□□□□ 0.59
VPS28-208ENST00000527797 MED22Q15528 200 aa18.76■□□□□ 0.59
VPS28-208ENST00000527797 LINC01590Q5TEZ4 76 aa18.76■□□□□ 0.59
VPS28-208ENST00000527797 LHFPL3Q86UP9 236 aa18.76■□□□□ 0.59
VPS28-208ENST00000527797 ADAD1Q96M93 576 aaKnown RBP18.76■□□□□ 0.59
VPS28-208ENST00000527797 COG8Q96MW5 612 aa18.76■□□□□ 0.59
VPS28-208ENST00000527797 KCNK17Q96T54 332 aa18.76■□□□□ 0.59
VPS28-208ENST00000527797 EMC6Q9BV81 110 aa18.76■□□□□ 0.59
VPS28-208ENST00000527797 RBM38Q9H0Z9 239 aaKnown RBP18.76■□□□□ 0.59
VPS28-208ENST00000527797 INPP5EQ9NRR6 644 aa18.76■□□□□ 0.59
VPS28-208ENST00000527797 ERVK13-1Q9NX77 482 aa18.76■□□□□ 0.59
VPS28-208ENST00000527797 B9D1Q9UPM9 204 aa18.76■□□□□ 0.59
VPS28-208ENST00000527797 LIPGQ9Y5X9 500 aa18.76■□□□□ 0.59
VPS28-208ENST00000527797 CNTRLQ7Z7A1 2325 aa18.76■□□□□ 0.59
VPS28-208ENST00000527797 TMEM129A0AVI4 362 aa18.75■□□□□ 0.59
VPS28-208ENST00000527797 DAPL1A0PJW8 107 aa18.75■□□□□ 0.59
VPS28-208ENST00000527797 ZNF726A6NNF4 738 aa18.75■□□□□ 0.59
VPS28-208ENST00000527797 C12orf71A8MTZ7 269 aa18.75■□□□□ 0.59
VPS28-208ENST00000527797 SLC16A7O60669 478 aa18.75■□□□□ 0.59
VPS28-208ENST00000527797 LIMS3P0CW19 117 aa18.75■□□□□ 0.59
VPS28-208ENST00000527797 LIMS4P0CW20 117 aa18.75■□□□□ 0.59
VPS28-208ENST00000527797 RPS3AP61247 264 aaKnown RBP18.75■□□□□ 0.59
VPS28-208ENST00000527797 TBR1Q16650 682 aa18.75■□□□□ 0.59
VPS28-208ENST00000527797 TIGD6Q17RP2 521 aa18.75■□□□□ 0.59
VPS28-208ENST00000527797 VASNQ6EMK4 673 aa18.75■□□□□ 0.59
VPS28-208ENST00000527797 Q6ZS92 163 aa18.75■□□□□ 0.59
VPS28-208ENST00000527797 ZBTB46Q86UZ6 589 aa18.75■□□□□ 0.59
VPS28-208ENST00000527797 CLVS1Q8IUQ0 354 aaPredicted RBP18.75■□□□□ 0.59
VPS28-208ENST00000527797 OR10H4Q8NGA5 316 aa18.75■□□□□ 0.59
VPS28-208ENST00000527797 OR6X1Q8NH79 312 aa18.75■□□□□ 0.59
VPS28-208ENST00000527797 SLC25A44Q96H78 314 aaPredicted RBP18.75■□□□□ 0.59
VPS28-208ENST00000527797 OR5M11Q96RB7 305 aa18.75■□□□□ 0.59
VPS28-208ENST00000527797 PAQR5Q9NXK6 330 aaPredicted RBP18.75■□□□□ 0.59
VPS28-208ENST00000527797 LSM2Q9Y333 95 aaKnown RBP18.75■□□□□ 0.59
VPS28-208ENST00000527797 FREM2Q5SZK8 3169 aa18.75■□□□□ 0.59
VPS28-208ENST00000527797 SLC35F4A4IF30 521 aa18.74■□□□□ 0.59
VPS28-208ENST00000527797 IGHG1P01857 330 aa18.74■□□□□ 0.59
VPS28-208ENST00000527797 PDGFAP04085 211 aa18.74■□□□□ 0.59
VPS28-208ENST00000527797 PLA2G5P39877 138 aa18.74■□□□□ 0.59
VPS28-208ENST00000527797 CENPAP49450 140 aa18.74■□□□□ 0.59
VPS28-208ENST00000527797 ACTC1P68032 377 aa18.74■□□□□ 0.59
VPS28-208ENST00000527797 ACTA1P68133 377 aa18.74■□□□□ 0.59
VPS28-208ENST00000527797 SLC17A1Q14916 467 aa18.74■□□□□ 0.59
VPS28-208ENST00000527797 SPHARQ15513 63 aa18.74■□□□□ 0.59
VPS28-208ENST00000527797 DNM1P34Q6PK57 102 aa18.74■□□□□ 0.59
VPS28-208ENST00000527797 CREB3L2Q70SY1 520 aa18.74■□□□□ 0.59
VPS28-208ENST00000527797 SYT14Q8NB59 555 aa18.74■□□□□ 0.59
VPS28-208ENST00000527797 OR9K2Q8NGE7 335 aa18.74■□□□□ 0.59
VPS28-208ENST00000527797 RBP7Q96R05 134 aa18.74■□□□□ 0.59
VPS28-208ENST00000527797 HSMCR30P0CW71 290 aa18.74■□□□□ 0.59
VPS28-208ENST00000527797 NAA10P41227 235 aaPredicted RBP18.74■□□□□ 0.59
VPS28-208ENST00000527797 BLVRAP53004 296 aa18.74■□□□□ 0.59
VPS28-208ENST00000527797 CLDN17P56750 224 aa18.74■□□□□ 0.59
VPS28-208ENST00000527797 GPR107Q5VW38 600 aa18.74■□□□□ 0.59
VPS28-208ENST00000527797 WDFY1Q8IWB7 410 aa18.74■□□□□ 0.59
VPS28-208ENST00000527797 KLHL36Q8N4N3 616 aa18.74■□□□□ 0.59
VPS28-208ENST00000527797 ZNF511Q8NB15 262 aa18.74■□□□□ 0.59
VPS28-208ENST00000527797 ROBO4Q8WZ75 1007 aa18.74■□□□□ 0.59
VPS28-208ENST00000527797 ZNF845Q96IR2 970 aaPredicted RBP18.74■□□□□ 0.59
VPS28-208ENST00000527797 TBX5Q99593 518 aa18.74■□□□□ 0.59
VPS28-208ENST00000527797 MGLLQ99685 303 aa18.74■□□□□ 0.59
VPS28-208ENST00000527797 MRPL13Q9BYD1 178 aaKnown RBP18.74■□□□□ 0.59
VPS28-208ENST00000527797 RACGAP1Q9H0H5 632 aa18.74■□□□□ 0.59
VPS28-208ENST00000527797 IGHG3P01860 377 aa18.73■□□□□ 0.59
VPS28-208ENST00000527797 OR2T7P0C7T2 308 aa18.73■□□□□ 0.59
VPS28-208ENST00000527797 CTLA4P16410 223 aa18.73■□□□□ 0.59
VPS28-208ENST00000527797 WNT4P56705 351 aa18.73■□□□□ 0.59
VPS28-208ENST00000527797 CLRN1P58418 232 aa18.73■□□□□ 0.59
VPS28-208ENST00000527797 CAMK2DQ13557 499 aa18.73■□□□□ 0.59
VPS28-208ENST00000527797 ARMCX4Q5H9R4 360 aa18.73■□□□□ 0.59
VPS28-208ENST00000527797 OR2G6Q5TZ20 316 aa18.73■□□□□ 0.59
VPS28-208ENST00000527797 SLC35F2Q8IXU6 374 aa18.73■□□□□ 0.59
VPS28-208ENST00000527797 OR2T27Q8NH04 317 aa18.73■□□□□ 0.59
VPS28-208ENST00000527797 ZNF649Q9BS31 505 aa18.73■□□□□ 0.59
VPS28-208ENST00000527797 IGLV1-36A0A0B4J1U3 117 aa18.72■□□□□ 0.59
VPS28-208ENST00000527797 K7EM74 188 aa18.72■□□□□ 0.59
VPS28-208ENST00000527797 SELENOFO60613 162 aa18.72■□□□□ 0.59
VPS28-208ENST00000527797 SYNGR4O95473 234 aa18.72■□□□□ 0.59
VPS28-208ENST00000527797 PGA4P0DJD7 388 aa18.72■□□□□ 0.59
VPS28-208ENST00000527797 PGA3P0DJD8 388 aa18.72■□□□□ 0.59
Retrieved 100 of 20,778 RNA–protein pairs in 31.8 ms