RNA–Protein interactions for RNA: ENST00000525688.5

CD44-220, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 5

Gene CD44, Length 560 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-220ENST00000525688 PITPNAQ00169 270 aa4.03□□□□□ -1.76
CD44-220ENST00000525688 REEP5Q00765 189 aa4.03□□□□□ -1.76
CD44-220ENST00000525688 EWSR1Q01844 656 aaKnown RBP eCLIP4.03□□□□□ -1.76
CD44-220ENST00000525688 GUCY2DQ02846 1103 aa4.03□□□□□ -1.76
CD44-220ENST00000525688 SRYQ05066 204 aa4.03□□□□□ -1.76
CD44-220ENST00000525688 TSPAN31Q12999 210 aa4.03□□□□□ -1.76
CD44-220ENST00000525688 ORC2Q13416 577 aaPredicted RBP4.03□□□□□ -1.76
CD44-220ENST00000525688 CAPRIN1Q14444 709 aaKnown RBP4.03□□□□□ -1.76
CD44-220ENST00000525688 MEF2DQ14814 521 aa4.03□□□□□ -1.76
CD44-220ENST00000525688 SLC17A1Q14916 467 aa4.03□□□□□ -1.76
CD44-220ENST00000525688 TRAM2Q15035 370 aa4.03□□□□□ -1.76
CD44-220ENST00000525688 ZNF74Q16587 644 aa4.03□□□□□ -1.76
CD44-220ENST00000525688 C5orf64Q2M2E5 130 aa4.03□□□□□ -1.76
CD44-220ENST00000525688 VPS26BQ4G0F5 336 aa4.03□□□□□ -1.76
CD44-220ENST00000525688 ACTBL2Q562R1 376 aa4.03□□□□□ -1.76
CD44-220ENST00000525688 MARCH8Q5T0T0 291 aa4.03□□□□□ -1.76
CD44-220ENST00000525688 STPG1Q5TH74 334 aa4.03□□□□□ -1.76
CD44-220ENST00000525688 KHDRBS2Q5VWX1 349 aaKnown RBP4.03□□□□□ -1.76
CD44-220ENST00000525688 OR4C11Q6IEV9 310 aa4.03□□□□□ -1.76
CD44-220ENST00000525688 DHRS11Q6UWP2 260 aa4.03□□□□□ -1.76
CD44-220ENST00000525688 TMEM184AQ6ZMB5 413 aa4.03□□□□□ -1.76
CD44-220ENST00000525688 C18orf65Q6ZTR6 163 aa4.03□□□□□ -1.76
CD44-220ENST00000525688 SH2D5Q6ZV89 423 aa4.03□□□□□ -1.76
CD44-220ENST00000525688 STOX1Q6ZVD7 989 aa4.03□□□□□ -1.76
CD44-220ENST00000525688 UTS2BQ765I0 119 aa4.03□□□□□ -1.76
CD44-220ENST00000525688 P4HA3Q7Z4N8 544 aa4.03□□□□□ -1.76
CD44-220ENST00000525688 MARCH9Q86YJ5 346 aa4.03□□□□□ -1.76
CD44-220ENST00000525688 SLC13A5Q86YT5 568 aaPredicted RBP4.03□□□□□ -1.76
CD44-220ENST00000525688 CCNYL1Q8N7R7 359 aa4.03□□□□□ -1.76
CD44-220ENST00000525688 TTC29Q8NA56 475 aaPredicted RBP4.03□□□□□ -1.76
CD44-220ENST00000525688 INO80EQ8NBZ0 244 aaPredicted RBP4.03□□□□□ -1.76
CD44-220ENST00000525688 CCDC197Q8NCU1 140 aa4.03□□□□□ -1.76
CD44-220ENST00000525688 OR5AP2Q8NGF4 316 aa4.03□□□□□ -1.76
CD44-220ENST00000525688 OR10G8Q8NGN5 311 aa4.03□□□□□ -1.76
CD44-220ENST00000525688 OR4A4PQ8NGN8 299 aa4.03□□□□□ -1.76
CD44-220ENST00000525688 OR2L8Q8NGY9 312 aa4.03□□□□□ -1.76
CD44-220ENST00000525688 GATAD1Q8WUU5 269 aa4.03□□□□□ -1.76
CD44-220ENST00000525688 ZNRF4Q8WWF5 429 aa4.03□□□□□ -1.76
CD44-220ENST00000525688 ACOT11Q8WXI4 607 aaPredicted RBP4.03□□□□□ -1.76
CD44-220ENST00000525688 NXPE2Q96DL1 559 aa4.03□□□□□ -1.76
CD44-220ENST00000525688 B3GALT6Q96L58 329 aa4.03□□□□□ -1.76
CD44-220ENST00000525688 FMO2Q99518 471 aa4.03□□□□□ -1.76
CD44-220ENST00000525688 EPYCQ99645 322 aa4.03□□□□□ -1.76
CD44-220ENST00000525688 NKX3-1Q99801 234 aaPredicted RBP4.03□□□□□ -1.76
CD44-220ENST00000525688 RACGAP1Q9H0H5 632 aa4.03□□□□□ -1.76
CD44-220ENST00000525688 OR51B6Q9H340 312 aa4.03□□□□□ -1.76
CD44-220ENST00000525688 SP140LQ9H930 580 aa4.03□□□□□ -1.76
CD44-220ENST00000525688 INPP5EQ9NRR6 644 aa4.03□□□□□ -1.76
CD44-220ENST00000525688 STARD5Q9NSY2 213 aa4.03□□□□□ -1.76
CD44-220ENST00000525688 TAS2R7Q9NYW3 318 aa4.03□□□□□ -1.76
CD44-220ENST00000525688 WARS2Q9UGM6 360 aaKnown RBP4.03□□□□□ -1.76
CD44-220ENST00000525688 KIF25Q9UIL4 384 aa4.03□□□□□ -1.76
CD44-220ENST00000525688 NPIPA1Q9UND3 350 aa4.03□□□□□ -1.76
CD44-220ENST00000525688 TCF19Q9Y242 345 aa4.03□□□□□ -1.76
CD44-220ENST00000525688 PPP2R2CQ9Y2T4 447 aa4.03□□□□□ -1.76
CD44-220ENST00000525688 OR1A2Q9Y585 309 aa4.03□□□□□ -1.76
CD44-220ENST00000525688 TSSC4Q9Y5U2 329 aaPredicted RBP4.03□□□□□ -1.76
CD44-220ENST00000525688 PEX16Q9Y5Y5 336 aa4.03□□□□□ -1.76
CD44-220ENST00000525688 DOCK3Q8IZD9 2030 aa4.03□□□□□ -1.76
CD44-220ENST00000525688 KIAA0100Q14667 2235 aaKnown RBP4.03□□□□□ -1.76
CD44-220ENST00000525688 MYH4Q9Y623 1939 aa4.03□□□□□ -1.76
CD44-220ENST00000525688 PLXNB2O15031 1838 aa4.02□□□□□ -1.77
CD44-220ENST00000525688 ARID2Q68CP9 1835 aa4.02□□□□□ -1.77
CD44-220ENST00000525688 SMCHD1A6NHR9 2005 aa4.02□□□□□ -1.77
CD44-220ENST00000525688 SCN5AQ14524 2016 aa4.02□□□□□ -1.77
CD44-220ENST00000525688 IGHV4-4A0A075B6R2 117 aa4.02□□□□□ -1.77
CD44-220ENST00000525688 LRP5LA4QPB2 252 aa4.02□□□□□ -1.77
CD44-220ENST00000525688 SERINC4A6NH21 518 aa4.02□□□□□ -1.77
CD44-220ENST00000525688 H3BN98 237 aa4.02□□□□□ -1.77
CD44-220ENST00000525688 CHST1O43916 411 aa4.02□□□□□ -1.77
CD44-220ENST00000525688 SRPX2O60687 465 aaPredicted RBP4.02□□□□□ -1.77
CD44-220ENST00000525688 HUS1O60921 280 aa4.02□□□□□ -1.77
CD44-220ENST00000525688 FCN3O75636 299 aa4.02□□□□□ -1.77
CD44-220ENST00000525688 ZMPSTE24O75844 475 aa4.02□□□□□ -1.77
CD44-220ENST00000525688 TMEM50AO95807 157 aa4.02□□□□□ -1.77
CD44-220ENST00000525688 ASS1P00966 412 aaKnown RBP4.02□□□□□ -1.77
CD44-220ENST00000525688 SLC35G4P0C7Q5 338 aa4.02□□□□□ -1.77
CD44-220ENST00000525688 PMCHP20382 165 aa4.02□□□□□ -1.77
CD44-220ENST00000525688 PRPS1L1P21108 318 aa4.02□□□□□ -1.77
CD44-220ENST00000525688 SYT1P21579 422 aa4.02□□□□□ -1.77
CD44-220ENST00000525688 BGNP21810 368 aa4.02□□□□□ -1.77
CD44-220ENST00000525688 PRDX3P30048 256 aaKnown RBP4.02□□□□□ -1.77
CD44-220ENST00000525688 GTF2H1P32780 548 aa4.02□□□□□ -1.77
CD44-220ENST00000525688 UGT2B10P36537 528 aa4.02□□□□□ -1.77
CD44-220ENST00000525688 HPCAL1P37235 193 aa4.02□□□□□ -1.77
CD44-220ENST00000525688 MAGEA2P43356 314 aa4.02□□□□□ -1.77
CD44-220ENST00000525688 SGSHP51688 502 aa4.02□□□□□ -1.77
CD44-220ENST00000525688 NUP107P57740 925 aa4.02□□□□□ -1.77
CD44-220ENST00000525688 MLF1P58340 268 aa4.02□□□□□ -1.77
CD44-220ENST00000525688 OSTNP61366 133 aa4.02□□□□□ -1.77
CD44-220ENST00000525688 VSNL1P62760 191 aa4.02□□□□□ -1.77
CD44-220ENST00000525688 KCNJ2P63252 427 aa4.02□□□□□ -1.77
CD44-220ENST00000525688 MRPS25P82663 173 aaKnown RBP4.02□□□□□ -1.77
CD44-220ENST00000525688 GPR50Q13585 617 aa4.02□□□□□ -1.77
CD44-220ENST00000525688 CEACAM7Q14002 265 aa4.02□□□□□ -1.77
CD44-220ENST00000525688 TFDP1Q14186 410 aa4.02□□□□□ -1.77
CD44-220ENST00000525688 FAM189A2Q15884 450 aa4.02□□□□□ -1.77
CD44-220ENST00000525688 TNXAQ16473 311 aa4.02□□□□□ -1.77
CD44-220ENST00000525688 QRICH1Q2TAL8 776 aa4.02□□□□□ -1.77
CD44-220ENST00000525688 SNAI3Q3KNW1 292 aa4.02□□□□□ -1.77
Retrieved 100 of 20,778 RNA–protein pairs in 33.8 ms