RNA–Protein interactions for RNA: ENST00000506244.5

SNCA-209, Transcript of synuclein alpha, humanhuman

APPRIS P1 TSL 2 BASIC

Gene SNCA, Length 570 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Synapse .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNCA-209ENST00000506244 CD40P25942 277 aa14.6□□□□□ -0.07
SNCA-209ENST00000506244 IST1P53990 364 aa14.6□□□□□ -0.07
SNCA-209ENST00000506244 TRAP1Q12931 704 aaKnown RBP14.6□□□□□ -0.07
SNCA-209ENST00000506244 ZNF627Q7L945 461 aa14.6□□□□□ -0.07
SNCA-209ENST00000506244 ZNF611Q8N823 705 aa14.6□□□□□ -0.07
SNCA-209ENST00000506244 OR13C2Q8NGS9 318 aa14.6□□□□□ -0.07
SNCA-209ENST00000506244 OR52J3Q8NH60 311 aa14.6□□□□□ -0.07
SNCA-209ENST00000506244 MOSPD2Q8NHP6 518 aa14.6□□□□□ -0.07
SNCA-209ENST00000506244 FNDC8Q8TC99 324 aa14.6□□□□□ -0.07
SNCA-209ENST00000506244 ASB10Q8WXI3 467 aa14.6□□□□□ -0.07
SNCA-209ENST00000506244 AKAP1Q92667 903 aaKnown RBP eCLIP14.6□□□□□ -0.07
SNCA-209ENST00000506244 FAM46AQ96IP4 442 aaKnown RBP14.6□□□□□ -0.07
SNCA-209ENST00000506244 ALPK1Q96QP1 1244 aa14.6□□□□□ -0.07
SNCA-209ENST00000506244 SEPHS2Q99611 448 aa14.6□□□□□ -0.07
SNCA-209ENST00000506244 FOXB1Q99853 325 aa14.6□□□□□ -0.07
SNCA-209ENST00000506244 KCNS3Q9BQ31 491 aa14.6□□□□□ -0.07
SNCA-209ENST00000506244 BTBD10Q9BSF8 475 aa14.6□□□□□ -0.07
SNCA-209ENST00000506244 TXNIPQ9H3M7 391 aa14.6□□□□□ -0.07
SNCA-209ENST00000506244 BEX4Q9NWD9 120 aaPredicted RBP14.6□□□□□ -0.07
SNCA-209ENST00000506244 ITGB1BP2Q9UKP3 347 aa14.6□□□□□ -0.07
SNCA-209ENST00000506244 MYO9AB2RTY4 2548 aa14.6□□□□□ -0.07
SNCA-209ENST00000506244 A0A096LPE4 126 aa14.59□□□□□ -0.07
SNCA-209ENST00000506244 A0A1W2PPZ6 126 aa14.59□□□□□ -0.07
SNCA-209ENST00000506244 TCRBV5S2A0A599 114 aa14.59□□□□□ -0.07
SNCA-209ENST00000506244 A6NIZ1 184 aa14.59□□□□□ -0.07
SNCA-209ENST00000506244 DNAJC8O75937 253 aaPredicted RBP14.59□□□□□ -0.07
SNCA-209ENST00000506244 ATP5HO75947 161 aa14.59□□□□□ -0.07
SNCA-209ENST00000506244 FUT4P22083 530 aa14.59□□□□□ -0.07
SNCA-209ENST00000506244 RRM2P31350 389 aa14.59□□□□□ -0.07
SNCA-209ENST00000506244 MAGEA2P43356 314 aa14.59□□□□□ -0.07
SNCA-209ENST00000506244 CAPZA2P47755 286 aa14.59□□□□□ -0.07
SNCA-209ENST00000506244 ART1P52961 327 aa14.59□□□□□ -0.07
SNCA-209ENST00000506244 CDH11P55287 796 aa14.59□□□□□ -0.07
SNCA-209ENST00000506244 RAP1BP61224 184 aa14.59□□□□□ -0.07
SNCA-209ENST00000506244 RAP1AP62834 184 aa14.59□□□□□ -0.07
SNCA-209ENST00000506244 LSM11P83369 360 aaKnown RBP eCLIP14.59□□□□□ -0.07
SNCA-209ENST00000506244 CHRNB3Q05901 458 aa14.59□□□□□ -0.07
SNCA-209ENST00000506244 TOP3AQ13472 1001 aaPredicted RBP14.59□□□□□ -0.07
SNCA-209ENST00000506244 DEFB113Q30KQ7 82 aa14.59□□□□□ -0.07
SNCA-209ENST00000506244 C3orf36Q3SXR2 165 aa14.59□□□□□ -0.07
SNCA-209ENST00000506244 ZNF672Q499Z4 452 aaPredicted RBP14.59□□□□□ -0.07
SNCA-209ENST00000506244 ZBED5Q49AG3 693 aa14.59□□□□□ -0.07
SNCA-209ENST00000506244 IQCCQ4KMZ1 466 aa14.59□□□□□ -0.07
SNCA-209ENST00000506244 PHYHD1Q5SRE7 291 aa14.59□□□□□ -0.07
SNCA-209ENST00000506244 TBPL2Q6SJ96 375 aa14.59□□□□□ -0.07
SNCA-209ENST00000506244 ZNF813Q6ZN06 617 aa14.59□□□□□ -0.07
SNCA-209ENST00000506244 PIAS4Q8N2W9 510 aaPredicted RBP14.59□□□□□ -0.07
SNCA-209ENST00000506244 FAM169BQ8N8A8 192 aa14.59□□□□□ -0.07
SNCA-209ENST00000506244 KBTBD8Q8NFY9 601 aa14.59□□□□□ -0.07
SNCA-209ENST00000506244 OR51A7Q8NH64 312 aa14.59□□□□□ -0.07
SNCA-209ENST00000506244 CLPTM1LQ96KA5 538 aa14.59□□□□□ -0.07
SNCA-209ENST00000506244 FOXC2Q99958 501 aa14.59□□□□□ -0.07
SNCA-209ENST00000506244 NELFAQ9H3P2 528 aa14.59□□□□□ -0.07
SNCA-209ENST00000506244 FAIMQ9NVQ4 179 aa14.59□□□□□ -0.07
SNCA-209ENST00000506244 POU2F3Q9UKI9 436 aa14.59□□□□□ -0.07
SNCA-209ENST00000506244 SH3PXD2BA1X283 911 aa14.58□□□□□ -0.08
SNCA-209ENST00000506244 CDC42EP2O14613 210 aa14.58□□□□□ -0.08
SNCA-209ENST00000506244 FARS2O95363 451 aaKnown RBP14.58□□□□□ -0.08
SNCA-209ENST00000506244 PLAUP00749 431 aa14.58□□□□□ -0.08
SNCA-209ENST00000506244 B4GALT1P15291 398 aa14.58□□□□□ -0.08
SNCA-209ENST00000506244 ACADSP16219 412 aa14.58□□□□□ -0.08
SNCA-209ENST00000506244 CD53P19397 219 aa14.58□□□□□ -0.08
SNCA-209ENST00000506244 RPL4P36578 427 aaKnown RBP14.58□□□□□ -0.08
SNCA-209ENST00000506244 OMPP47874 163 aa14.58□□□□□ -0.08
SNCA-209ENST00000506244 LIMS1P48059 325 aa14.58□□□□□ -0.08
SNCA-209ENST00000506244 ZNF84P51523 738 aa14.58□□□□□ -0.08
SNCA-209ENST00000506244 CTXN1P60606 82 aa14.58□□□□□ -0.08
SNCA-209ENST00000506244 RPL27P61353 136 aaKnown RBP14.58□□□□□ -0.08
SNCA-209ENST00000506244 LAPTM4AQ15012 233 aa14.58□□□□□ -0.08
SNCA-209ENST00000506244 ARMC4Q5T2S8 1044 aa14.58□□□□□ -0.08
SNCA-209ENST00000506244 SLC22A25Q6T423 547 aa14.58□□□□□ -0.08
SNCA-209ENST00000506244 LINC00471Q8N535 108 aa14.58□□□□□ -0.08
SNCA-209ENST00000506244 ZNF837Q96EG3 531 aaPredicted RBP14.58□□□□□ -0.08
SNCA-209ENST00000506244 RSRC1Q96IZ7 334 aaKnown RBP14.58□□□□□ -0.08
SNCA-209ENST00000506244 SLC38A2Q96QD8 506 aa14.58□□□□□ -0.08
SNCA-209ENST00000506244 ALG12Q9BV10 488 aa14.58□□□□□ -0.08
SNCA-209ENST00000506244 DENND2DQ9H6A0 471 aaPredicted RBP14.58□□□□□ -0.08
SNCA-209ENST00000506244 SMURF2Q9HAU4 748 aa14.58□□□□□ -0.08
SNCA-209ENST00000506244 FBXL3Q9UKT7 428 aa14.58□□□□□ -0.08
SNCA-209ENST00000506244 PRR14LQ5THK1 2151 aa14.58□□□□□ -0.08
SNCA-209ENST00000506244 RAI1Q7Z5J4 1906 aaPredicted RBP14.58□□□□□ -0.08
SNCA-209ENST00000506244 AQP12BA6NM10 295 aa14.57□□□□□ -0.08
SNCA-209ENST00000506244 DHHO43323 396 aa14.57□□□□□ -0.08
SNCA-209ENST00000506244 OR10H3O60404 316 aa14.57□□□□□ -0.08
SNCA-209ENST00000506244 TRMUO75648 421 aaKnown RBP14.57□□□□□ -0.08
SNCA-209ENST00000506244 SEC14L2O76054 403 aa14.57□□□□□ -0.08
SNCA-209ENST00000506244 NDUFB2O95178 105 aa14.57□□□□□ -0.08
SNCA-209ENST00000506244 RAP2AP10114 183 aa14.57□□□□□ -0.08
SNCA-209ENST00000506244 ARR3P36575 388 aa14.57□□□□□ -0.08
SNCA-209ENST00000506244 MS4A2Q01362 244 aa14.57□□□□□ -0.08
SNCA-209ENST00000506244 CD47Q08722 323 aa14.57□□□□□ -0.08
SNCA-209ENST00000506244 BNIP1Q12981 228 aa14.57□□□□□ -0.08
SNCA-209ENST00000506244 FLOT2Q14254 428 aa14.57□□□□□ -0.08
SNCA-209ENST00000506244 SEC23BQ15437 767 aa14.57□□□□□ -0.08
SNCA-209ENST00000506244 HIST3H3Q16695 136 aa14.57□□□□□ -0.08
SNCA-209ENST00000506244 NRN1LQ496H8 165 aa14.57□□□□□ -0.08
SNCA-209ENST00000506244 DPPA2Q7Z7J5 298 aa14.57□□□□□ -0.08
SNCA-209ENST00000506244 MEX3DQ86XN8 651 aaKnown RBP14.57□□□□□ -0.08
SNCA-209ENST00000506244 AQP12AQ8IXF9 295 aa14.57□□□□□ -0.08
SNCA-209ENST00000506244 TMEM171Q8WVE6 324 aa14.57□□□□□ -0.08
Retrieved 100 of 20,778 RNA–protein pairs in 55.3 ms