RNA–Protein interactions for RNA: ENST00000493662.6

MSH5-SAPCD1-207, Transcript of MSH5-SAPCD1 readthrough (NMD candidate), humanhuman

APPRIS P5 TSL 1 (best) BASIC

Gene MSH5-SAPCD1, Length 3,991 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH5-SAPCD1-207ENST00000493662 OR5M1Q8NGP8 315 aa9.86□□□□□ -0.83
MSH5-SAPCD1-207ENST00000493662 OR6N2Q8NGY6 317 aa9.86□□□□□ -0.83
MSH5-SAPCD1-207ENST00000493662 GNPDA2Q8TDQ7 276 aa9.86□□□□□ -0.83
MSH5-SAPCD1-207ENST00000493662 OSTF1Q92882 214 aa9.86□□□□□ -0.83
MSH5-SAPCD1-207ENST00000493662 C14orf79Q96F83 325 aa9.86□□□□□ -0.83
MSH5-SAPCD1-207ENST00000493662 POLDIP3Q9BY77 421 aaKnown RBP9.86□□□□□ -0.83
MSH5-SAPCD1-207ENST00000493662 HRH4Q9H3N8 390 aa9.86□□□□□ -0.83
MSH5-SAPCD1-207ENST00000493662 TMEM38AQ9H6F2 299 aa9.86□□□□□ -0.83
MSH5-SAPCD1-207ENST00000493662 LHX9Q9NQ69 397 aa9.86□□□□□ -0.83
MSH5-SAPCD1-207ENST00000493662 DLL4Q9NR61 685 aa9.86□□□□□ -0.83
MSH5-SAPCD1-207ENST00000493662 MIOXQ9UGB7 285 aa9.86□□□□□ -0.83
MSH5-SAPCD1-207ENST00000493662 FLVCR2Q9UPI3 526 aa9.86□□□□□ -0.83
MSH5-SAPCD1-207ENST00000493662 ADAM18Q9Y3Q7 739 aa9.86□□□□□ -0.83
MSH5-SAPCD1-207ENST00000493662 MYO15AQ9UKN7 3530 aa9.86□□□□□ -0.83
MSH5-SAPCD1-207ENST00000493662 ANKRD61A6NGH8 418 aa9.85□□□□□ -0.83
MSH5-SAPCD1-207ENST00000493662 LPLP06858 475 aa9.85□□□□□ -0.83
MSH5-SAPCD1-207ENST00000493662 ACP2P11117 423 aa9.85□□□□□ -0.83
MSH5-SAPCD1-207ENST00000493662 ART1P52961 327 aa9.85□□□□□ -0.83
MSH5-SAPCD1-207ENST00000493662 OR12D2P58182 307 aa9.85□□□□□ -0.83
MSH5-SAPCD1-207ENST00000493662 FABP5Q01469 135 aa9.85□□□□□ -0.83
MSH5-SAPCD1-207ENST00000493662 EIF2S3LQ2VIR3 472 aaKnown RBP9.85□□□□□ -0.83
MSH5-SAPCD1-207ENST00000493662 TRIM61Q5EBN2 209 aa9.85□□□□□ -0.83
MSH5-SAPCD1-207ENST00000493662 C3orf38Q5JPI3 329 aa9.85□□□□□ -0.83
MSH5-SAPCD1-207ENST00000493662 ADAM5Q6NVV9 412 aa9.85□□□□□ -0.83
MSH5-SAPCD1-207ENST00000493662 PRSS45Q7RTY3 260 aa9.85□□□□□ -0.83
MSH5-SAPCD1-207ENST00000493662 SFT2D1Q8WV19 159 aa9.85□□□□□ -0.83
MSH5-SAPCD1-207ENST00000493662 CDX2Q99626 313 aaPredicted RBP9.85□□□□□ -0.83
MSH5-SAPCD1-207ENST00000493662 PITHD1Q9GZP4 211 aaPredicted RBP9.85□□□□□ -0.83
MSH5-SAPCD1-207ENST00000493662 SYNPO2LQ9H987 977 aa9.85□□□□□ -0.83
MSH5-SAPCD1-207ENST00000493662 ELL3Q9HB65 397 aaPredicted RBP9.85□□□□□ -0.83
MSH5-SAPCD1-207ENST00000493662 UBL3O95164 117 aa9.85□□□□□ -0.83
MSH5-SAPCD1-207ENST00000493662 DBIP07108 87 aaKnown RBP9.85□□□□□ -0.83
MSH5-SAPCD1-207ENST00000493662 CLDN6P56747 220 aa9.85□□□□□ -0.83
MSH5-SAPCD1-207ENST00000493662 RBM39Q14498 530 aaKnown RBP9.85□□□□□ -0.83
MSH5-SAPCD1-207ENST00000493662 ETFDHQ16134 617 aa9.85□□□□□ -0.83
MSH5-SAPCD1-207ENST00000493662 FCRL6Q6DN72 434 aa9.85□□□□□ -0.83
MSH5-SAPCD1-207ENST00000493662 LAIR1Q6GTX8 287 aa9.85□□□□□ -0.83
MSH5-SAPCD1-207ENST00000493662 ZNF836Q6ZNA1 936 aa9.85□□□□□ -0.83
MSH5-SAPCD1-207ENST00000493662 ZNF704Q6ZNC4 412 aaPredicted RBP9.85□□□□□ -0.83
MSH5-SAPCD1-207ENST00000493662 ZNF627Q7L945 461 aa9.85□□□□□ -0.83
MSH5-SAPCD1-207ENST00000493662 GDF7Q7Z4P5 450 aa9.85□□□□□ -0.83
MSH5-SAPCD1-207ENST00000493662 PEG10Q86TG7 708 aaKnown RBP9.85□□□□□ -0.83
MSH5-SAPCD1-207ENST00000493662 ZNF619Q8N2I2 560 aa9.85□□□□□ -0.83
MSH5-SAPCD1-207ENST00000493662 CHST4Q8NCG5 386 aa9.85□□□□□ -0.83
MSH5-SAPCD1-207ENST00000493662 OR4Q3Q8NH05 313 aa9.85□□□□□ -0.83
MSH5-SAPCD1-207ENST00000493662 KCTD12Q96CX2 325 aaKnown RBP9.85□□□□□ -0.83
MSH5-SAPCD1-207ENST00000493662 TSSK2Q96PF2 358 aa9.85□□□□□ -0.83
MSH5-SAPCD1-207ENST00000493662 WDR77Q9BQA1 342 aaPredicted RBP9.85□□□□□ -0.83
MSH5-SAPCD1-207ENST00000493662 ZNF251Q9BRH9 671 aa9.85□□□□□ -0.83
MSH5-SAPCD1-207ENST00000493662 OR10A5Q9H207 317 aa9.85□□□□□ -0.83
MSH5-SAPCD1-207ENST00000493662 MIXL1Q9H2W2 232 aa9.85□□□□□ -0.83
MSH5-SAPCD1-207ENST00000493662 PIGMQ9H3S5 423 aa9.85□□□□□ -0.83
MSH5-SAPCD1-207ENST00000493662 EVA1AQ9H8M9 152 aa9.85□□□□□ -0.83
MSH5-SAPCD1-207ENST00000493662 ZNF629Q9UEG4 869 aaPredicted RBP9.85□□□□□ -0.83
MSH5-SAPCD1-207ENST00000493662 PCNX1Q96RV3 2341 aa9.85□□□□□ -0.83
MSH5-SAPCD1-207ENST00000493662 IGHV1OR15-9A0A0B4J2B8 117 aa9.85□□□□□ -0.83
MSH5-SAPCD1-207ENST00000493662 EEF1E1-BLOC1S5C9J1V9 151 aa9.85□□□□□ -0.83
MSH5-SAPCD1-207ENST00000493662 GALR3O60755 368 aaPredicted RBP9.85□□□□□ -0.83
MSH5-SAPCD1-207ENST00000493662 TRAPPC6AO75865 159 aa9.85□□□□□ -0.83
MSH5-SAPCD1-207ENST00000493662 RCBTB2O95199 551 aa9.85□□□□□ -0.83
MSH5-SAPCD1-207ENST00000493662 PIPP12273 146 aaPredicted RBP9.85□□□□□ -0.83
MSH5-SAPCD1-207ENST00000493662 OTX2P32243 289 aa9.85□□□□□ -0.83
MSH5-SAPCD1-207ENST00000493662 ADH7P40394 386 aa9.85□□□□□ -0.83
MSH5-SAPCD1-207ENST00000493662 SLC1A3P43003 542 aa9.85□□□□□ -0.83
MSH5-SAPCD1-207ENST00000493662 DGCR2P98153 550 aa9.85□□□□□ -0.83
MSH5-SAPCD1-207ENST00000493662 DMRTC1Q5HYR2 192 aa9.85□□□□□ -0.83
MSH5-SAPCD1-207ENST00000493662 QSOX2Q6ZRP7 698 aa9.85□□□□□ -0.83
MSH5-SAPCD1-207ENST00000493662 ABI3BPQ7Z7G0 1075 aa9.85□□□□□ -0.83
MSH5-SAPCD1-207ENST00000493662 LRRC56Q8IYG6 542 aaPredicted RBP9.85□□□□□ -0.83
MSH5-SAPCD1-207ENST00000493662 OR4C3Q8NH37 302 aa9.85□□□□□ -0.83
MSH5-SAPCD1-207ENST00000493662 SDHCQ99643 169 aaPredicted RBP9.85□□□□□ -0.83
MSH5-SAPCD1-207ENST00000493662 TINAGL1Q9GZM7 467 aaPredicted RBP9.85□□□□□ -0.83
MSH5-SAPCD1-207ENST00000493662 SEMA6CQ9H3T2 930 aa9.85□□□□□ -0.83
MSH5-SAPCD1-207ENST00000493662 ZFP57Q9NU63 452 aa9.85□□□□□ -0.83
MSH5-SAPCD1-207ENST00000493662 ANAPC1Q9H1A4 1944 aa9.85□□□□□ -0.83
MSH5-SAPCD1-207ENST00000493662 FFAR1O14842 300 aa9.84□□□□□ -0.83
MSH5-SAPCD1-207ENST00000493662 GCM2O75603 506 aaPredicted RBP9.84□□□□□ -0.83
MSH5-SAPCD1-207ENST00000493662 AGR2O95994 175 aa9.84□□□□□ -0.83
MSH5-SAPCD1-207ENST00000493662 CFDP00746 253 aaPredicted RBP9.84□□□□□ -0.83
MSH5-SAPCD1-207ENST00000493662 GIPP09681 153 aaPredicted RBP9.84□□□□□ -0.83
MSH5-SAPCD1-207ENST00000493662 RAB5CP51148 216 aa9.84□□□□□ -0.83
MSH5-SAPCD1-207ENST00000493662 EEF1A2Q05639 463 aaKnown RBP9.84□□□□□ -0.83
MSH5-SAPCD1-207ENST00000493662 ILKQ13418 452 aa9.84□□□□□ -0.83
MSH5-SAPCD1-207ENST00000493662 SMAD4Q13485 552 aaKnown RBP9.84□□□□□ -0.83
MSH5-SAPCD1-207ENST00000493662 GAS6Q14393 721 aa9.84□□□□□ -0.83
MSH5-SAPCD1-207ENST00000493662 PON3Q15166 354 aa9.84□□□□□ -0.83
MSH5-SAPCD1-207ENST00000493662 RHEBQ15382 184 aa9.84□□□□□ -0.83
MSH5-SAPCD1-207ENST00000493662 TRAM1Q15629 374 aa9.84□□□□□ -0.83
MSH5-SAPCD1-207ENST00000493662 C9orf152Q5JTZ5 239 aa9.84□□□□□ -0.83
MSH5-SAPCD1-207ENST00000493662 SFXN4Q6P4A7 337 aa9.84□□□□□ -0.83
MSH5-SAPCD1-207ENST00000493662 RPTNQ6XPR3 784 aa9.84□□□□□ -0.83
MSH5-SAPCD1-207ENST00000493662 SYT9Q86SS6 491 aa9.84□□□□□ -0.83
MSH5-SAPCD1-207ENST00000493662 RHBDD1Q8TEB9 315 aa9.84□□□□□ -0.83
MSH5-SAPCD1-207ENST00000493662 DUSP19Q8WTR2 217 aa9.84□□□□□ -0.83
MSH5-SAPCD1-207ENST00000493662 ORAI1Q96D31 301 aa9.84□□□□□ -0.83
MSH5-SAPCD1-207ENST00000493662 RBP7Q96R05 134 aa9.84□□□□□ -0.83
MSH5-SAPCD1-207ENST00000493662 ALG8Q9BVK2 526 aa9.84□□□□□ -0.83
MSH5-SAPCD1-207ENST00000493662 PPP4R1LQ9P1A2 415 aa9.84□□□□□ -0.83
MSH5-SAPCD1-207ENST00000493662 A0A1B0GWA3 101 aa9.84□□□□□ -0.83
MSH5-SAPCD1-207ENST00000493662 C17orf51A8MQB3 221 aa9.84□□□□□ -0.83
Retrieved 100 of 20,778 RNA–protein pairs in 60.5 ms