RNA–Protein interactions for RNA: ENST00000493468.6

PRPF40A-211, Transcript of pre-mRNA processing factor 40 homolog A, humanhuman

TSL 1 (best)

Gene PRPF40A, Length 1,043 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF40A-211ENST00000493468 CPEB3Q8NE35 698 aaKnown RBP12.06□□□□□ -0.48
PRPF40A-211ENST00000493468 SLC30A7Q8NEW0 376 aa12.06□□□□□ -0.48
PRPF40A-211ENST00000493468 TAAR8Q969N4 342 aa12.06□□□□□ -0.48
PRPF40A-211ENST00000493468 SLC41A3Q96GZ6 507 aa12.06□□□□□ -0.48
PRPF40A-211ENST00000493468 APOPT1Q96IL0 206 aa12.06□□□□□ -0.48
PRPF40A-211ENST00000493468 SPATA9Q9BWV2 254 aa12.06□□□□□ -0.48
PRPF40A-211ENST00000493468 BCL2L14Q9BZR8 327 aa12.06□□□□□ -0.48
PRPF40A-211ENST00000493468 ARMC7Q9H6L4 198 aa12.06□□□□□ -0.48
PRPF40A-211ENST00000493468 P2RX2Q9UBL9 471 aa12.06□□□□□ -0.48
PRPF40A-211ENST00000493468 CHST2Q9Y4C5 530 aa12.06□□□□□ -0.48
PRPF40A-211ENST00000493468 TRAV36DV7A0A075B6V5 113 aa12.05□□□□□ -0.48
PRPF40A-211ENST00000493468 CCDC154A6NI56 674 aa12.05□□□□□ -0.48
PRPF40A-211ENST00000493468 A8MXK9 166 aa12.05□□□□□ -0.48
PRPF40A-211ENST00000493468 E9PBE3 544 aa12.05□□□□□ -0.48
PRPF40A-211ENST00000493468 MS4A18H0YCH9 400 aa12.05□□□□□ -0.48
PRPF40A-211ENST00000493468 TIMM23O14925 209 aa12.05□□□□□ -0.48
PRPF40A-211ENST00000493468 UBOX5O94941 541 aa12.05□□□□□ -0.48
PRPF40A-211ENST00000493468 MFN2O95140 757 aa12.05□□□□□ -0.48
PRPF40A-211ENST00000493468 HPRP00739 348 aa12.05□□□□□ -0.48
PRPF40A-211ENST00000493468 IGHV3-13P01766 116 aa12.05□□□□□ -0.48
PRPF40A-211ENST00000493468 FAM157BP0CG42 384 aa12.05□□□□□ -0.48
PRPF40A-211ENST00000493468 S100A3P33764 101 aa12.05□□□□□ -0.48
PRPF40A-211ENST00000493468 CRISP3P54108 245 aa12.05□□□□□ -0.48
PRPF40A-211ENST00000493468 LRRC74AQ0VAA2 488 aa12.05□□□□□ -0.48
PRPF40A-211ENST00000493468 MS4A18Q3C1V0 323 aa12.05□□□□□ -0.48
PRPF40A-211ENST00000493468 FBLN7Q53RD9 439 aa12.05□□□□□ -0.48
PRPF40A-211ENST00000493468 COX20Q5RI15 118 aa12.05□□□□□ -0.48
PRPF40A-211ENST00000493468 C17orf107Q6ZR85 190 aa12.05□□□□□ -0.48
PRPF40A-211ENST00000493468 SPATC1Q76KD6 591 aa12.05□□□□□ -0.48
PRPF40A-211ENST00000493468 DPPA2Q7Z7J5 298 aa12.05□□□□□ -0.48
PRPF40A-211ENST00000493468 PAQR4Q8N4S7 273 aaPredicted RBP12.05□□□□□ -0.48
PRPF40A-211ENST00000493468 SCAIQ8N9R8 606 aa12.05□□□□□ -0.48
PRPF40A-211ENST00000493468 MNS1Q8NEH6 495 aa12.05□□□□□ -0.48
PRPF40A-211ENST00000493468 OR6N1Q8NGY5 312 aa12.05□□□□□ -0.48
PRPF40A-211ENST00000493468 OR6S1Q8NH40 331 aa12.05□□□□□ -0.48
PRPF40A-211ENST00000493468 PANX1Q96RD7 426 aa12.05□□□□□ -0.48
PRPF40A-211ENST00000493468 MRI1Q9BV20 369 aa12.05□□□□□ -0.48
PRPF40A-211ENST00000493468 EMC6Q9BV81 110 aa12.05□□□□□ -0.48
PRPF40A-211ENST00000493468 AKTIPQ9H8T0 292 aa12.05□□□□□ -0.48
PRPF40A-211ENST00000493468 MMP26Q9NRE1 261 aa12.05□□□□□ -0.48
PRPF40A-211ENST00000493468 KLHL14Q9P2G3 628 aa12.05□□□□□ -0.48
PRPF40A-211ENST00000493468 INSIG2Q9Y5U4 225 aa12.05□□□□□ -0.48
PRPF40A-211ENST00000493468 A0A087WUJ7 227 aa12.04□□□□□ -0.48
PRPF40A-211ENST00000493468 ISPDA4D126 451 aa12.04□□□□□ -0.48
PRPF40A-211ENST00000493468 TM9SF1O15321 606 aa12.04□□□□□ -0.48
PRPF40A-211ENST00000493468 SHBGP04278 402 aa12.04□□□□□ -0.48
PRPF40A-211ENST00000493468 LCKP06239 509 aa12.04□□□□□ -0.48
PRPF40A-211ENST00000493468 ADH4P08319 380 aa12.04□□□□□ -0.48
PRPF40A-211ENST00000493468 FAM153BP0C7A2 387 aa12.04□□□□□ -0.48
PRPF40A-211ENST00000493468 PPIAL4GP0DN37 164 aa12.04□□□□□ -0.48
PRPF40A-211ENST00000493468 HLA-DOBP13765 273 aa12.04□□□□□ -0.48
PRPF40A-211ENST00000493468 MAKP20794 623 aa12.04□□□□□ -0.48
PRPF40A-211ENST00000493468 ZNF81P51508 661 aa12.04□□□□□ -0.48
PRPF40A-211ENST00000493468 UCP2P55851 309 aa12.04□□□□□ -0.48
PRPF40A-211ENST00000493468 PMS2P3Q13401 168 aa12.04□□□□□ -0.48
PRPF40A-211ENST00000493468 TSTQ16762 297 aaKnown RBP12.04□□□□□ -0.48
PRPF40A-211ENST00000493468 SKA3Q8IX90 412 aa12.04□□□□□ -0.48
PRPF40A-211ENST00000493468 IFT20Q8IY31 132 aa12.04□□□□□ -0.48
PRPF40A-211ENST00000493468 OR4F5Q8NH21 305 aa12.04□□□□□ -0.48
PRPF40A-211ENST00000493468 FGFBP3Q8TAT2 258 aa12.04□□□□□ -0.48
PRPF40A-211ENST00000493468 CCL17Q92583 94 aa12.04□□□□□ -0.48
PRPF40A-211ENST00000493468 TAF15Q92804 592 aaKnown RBP eCLIP12.04□□□□□ -0.488e-10■□□□□ 10.2
PRPF40A-211ENST00000493468 CCT8L2Q96SF2 557 aa12.04□□□□□ -0.48
PRPF40A-211ENST00000493468 RSPO3Q9BXY4 272 aaPredicted RBP12.04□□□□□ -0.48
PRPF40A-211ENST00000493468 MS4A7Q9GZW8 240 aaPredicted RBP12.04□□□□□ -0.48
PRPF40A-211ENST00000493468 BEX1Q9HBH7 125 aa12.04□□□□□ -0.48
PRPF40A-211ENST00000493468 CDH20Q9HBT6 801 aa12.04□□□□□ -0.48
PRPF40A-211ENST00000493468 UBAP1Q9NZ09 502 aa12.04□□□□□ -0.48
PRPF40A-211ENST00000493468 ZNF232Q9UNY5 417 aa12.04□□□□□ -0.48
PRPF40A-211ENST00000493468 IFT52Q9Y366 437 aa12.04□□□□□ -0.48
PRPF40A-211ENST00000493468 IGKV1D-42A0A075B6H8 117 aa12.03□□□□□ -0.48
PRPF40A-211ENST00000493468 TRAPPC2LH3BP13 241 aa12.03□□□□□ -0.48
PRPF40A-211ENST00000493468 ALX3O95076 343 aa12.03□□□□□ -0.48
PRPF40A-211ENST00000493468 KRT75O95678 551 aa12.03□□□□□ -0.48
PRPF40A-211ENST00000493468 PTHP01270 115 aa12.03□□□□□ -0.48
PRPF40A-211ENST00000493468 IGHV1-46P01743 117 aa12.03□□□□□ -0.48
PRPF40A-211ENST00000493468 IGHV2-70P01814 119 aa12.03□□□□□ -0.48
PRPF40A-211ENST00000493468 PATE4P0C8F1 98 aa12.03□□□□□ -0.48
PRPF40A-211ENST00000493468 OR8G3PP0DMU2 310 aa12.03□□□□□ -0.48
PRPF40A-211ENST00000493468 NQO1P15559 274 aaKnown RBP12.03□□□□□ -0.48
PRPF40A-211ENST00000493468 DRD4P21917 467 aa12.03□□□□□ -0.48
PRPF40A-211ENST00000493468 MVDP53602 400 aa12.03□□□□□ -0.48
PRPF40A-211ENST00000493468 ERVS71-1P61550 626 aa12.03□□□□□ -0.48
PRPF40A-211ENST00000493468 SRSF4Q08170 494 aaKnown RBP12.03□□□□□ -0.48
PRPF40A-211ENST00000493468 TBC1D28Q2M2D7 210 aa12.03□□□□□ -0.48
PRPF40A-211ENST00000493468 PDCD4Q53EL6 469 aaKnown RBP12.03□□□□□ -0.48
PRPF40A-211ENST00000493468 RHOUQ7L0Q8 258 aa12.03□□□□□ -0.48
PRPF40A-211ENST00000493468 SLC22A24Q8N4F4 322 aa12.03□□□□□ -0.48
PRPF40A-211ENST00000493468 LSMEM1Q8N8F7 131 aa12.03□□□□□ -0.48
PRPF40A-211ENST00000493468 OR1J2Q8NGS2 313 aa12.03□□□□□ -0.48
PRPF40A-211ENST00000493468 GTF3AQ92664 365 aaKnown RBP12.03□□□□□ -0.48
PRPF40A-211ENST00000493468 EGLN1Q9GZT9 426 aa12.03□□□□□ -0.48
PRPF40A-211ENST00000493468 CACYBPQ9HB71 228 aaKnown RBP12.03□□□□□ -0.48
PRPF40A-211ENST00000493468 A0A0G2JPF8 293 aa12.02□□□□□ -0.49
PRPF40A-211ENST00000493468 ZNF726A6NNF4 738 aa12.02□□□□□ -0.49
PRPF40A-211ENST00000493468 HNRNPCL2B2RXH8 293 aa12.02□□□□□ -0.49
PRPF40A-211ENST00000493468 HNRNPCL3B7ZW38 293 aa12.02□□□□□ -0.49
PRPF40A-211ENST00000493468 ZNF500O60304 480 aaPredicted RBP12.02□□□□□ -0.49
PRPF40A-211ENST00000493468 HNRNPCL1O60812 293 aaKnown RBP12.02□□□□□ -0.49
PRPF40A-211ENST00000493468 NDUFA7O95182 113 aa12.02□□□□□ -0.49
Retrieved 100 of 20,778 RNA–protein pairs in 25.4 ms