RNA–Protein interactions for RNA: ENST00000492980.1

CCDC88B-208, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 5

Gene CCDC88B, Length 2,118 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-208ENST00000492980 ORAI1Q96D31 301 aa19.01■□□□□ 0.63
CCDC88B-208ENST00000492980 ARL5BQ96KC2 179 aa19.01■□□□□ 0.63
CCDC88B-208ENST00000492980 DERL3Q96Q80 235 aa19.01■□□□□ 0.63
CCDC88B-208ENST00000492980 TSPAN10Q9H1Z9 355 aaPredicted RBP19.01■□□□□ 0.63
CCDC88B-208ENST00000492980 IGLV1-36A0A0B4J1U3 117 aa19■□□□□ 0.63
CCDC88B-208ENST00000492980 A0A1B0GVC2 190 aa19■□□□□ 0.63
CCDC88B-208ENST00000492980 A6NIN4 97 aa19■□□□□ 0.63
CCDC88B-208ENST00000492980 ETV2O00321 342 aaPredicted RBP19■□□□□ 0.63
CCDC88B-208ENST00000492980 PHYHO14832 338 aa19■□□□□ 0.63
CCDC88B-208ENST00000492980 FZD7O75084 574 aa19■□□□□ 0.63
CCDC88B-208ENST00000492980 FBXO45P0C2W1 286 aa19■□□□□ 0.63
CCDC88B-208ENST00000492980 CCKBRP32239 447 aa19■□□□□ 0.63
CCDC88B-208ENST00000492980 MAGEB1P43366 347 aa19■□□□□ 0.63
CCDC88B-208ENST00000492980 PITPNBP48739 271 aa19■□□□□ 0.63
CCDC88B-208ENST00000492980 ZFP36L1Q07352 338 aaKnown RBP19■□□□□ 0.63
CCDC88B-208ENST00000492980 TRA2AQ13595 282 aaKnown RBP eCLIP19■□□□□ 0.63
CCDC88B-208ENST00000492980 MELKQ14680 651 aa19■□□□□ 0.63
CCDC88B-208ENST00000492980 ZNF544Q6NX49 715 aa19■□□□□ 0.63
CCDC88B-208ENST00000492980 SLC23A3Q6PIS1 610 aa19■□□□□ 0.63
CCDC88B-208ENST00000492980 AGBL5Q8NDL9 886 aa19■□□□□ 0.63
CCDC88B-208ENST00000492980 OTOSQ8NHW6 89 aa19■□□□□ 0.63
CCDC88B-208ENST00000492980 ENKURQ8TC29 256 aa19■□□□□ 0.63
CCDC88B-208ENST00000492980 SLC22A8Q8TCC7 542 aa19■□□□□ 0.63
CCDC88B-208ENST00000492980 THEM6Q8WUY1 208 aa19■□□□□ 0.63
CCDC88B-208ENST00000492980 AMELYQ99218 206 aa19■□□□□ 0.63
CCDC88B-208ENST00000492980 GFI1Q99684 422 aa19■□□□□ 0.63
CCDC88B-208ENST00000492980 GTPBP2Q9BX10 602 aaKnown RBP19■□□□□ 0.63
CCDC88B-208ENST00000492980 PPP4R1LQ9P1A2 415 aa19■□□□□ 0.63
CCDC88B-208ENST00000492980 KCNG2Q9UJ96 466 aa19■□□□□ 0.63
CCDC88B-208ENST00000492980 ING1Q9UK53 422 aaPredicted RBP19■□□□□ 0.63
CCDC88B-208ENST00000492980 NXT1Q9UKK6 140 aaKnown RBP19■□□□□ 0.63
CCDC88B-208ENST00000492980 SLC22A23A1A5C7 686 aa19■□□□□ 0.63
CCDC88B-208ENST00000492980 SLC16A7O60669 478 aa19■□□□□ 0.63
CCDC88B-208ENST00000492980 HLA-DOBP13765 273 aa19■□□□□ 0.63
CCDC88B-208ENST00000492980 PCOLCEQ15113 449 aa19■□□□□ 0.63
CCDC88B-208ENST00000492980 OR5AK2Q8NH90 309 aa19■□□□□ 0.63
CCDC88B-208ENST00000492980 MFSD8Q8NHS3 518 aa19■□□□□ 0.63
CCDC88B-208ENST00000492980 ZC3HAV1LQ96H79 300 aaKnown RBP19■□□□□ 0.63
CCDC88B-208ENST00000492980 FOXN4Q96NZ1 517 aa19■□□□□ 0.63
CCDC88B-208ENST00000492980 WACQ9BTA9 647 aa19■□□□□ 0.63
CCDC88B-208ENST00000492980 SLC25A18Q9H1K4 315 aa19■□□□□ 0.63
CCDC88B-208ENST00000492980 RBFOX1Q9NWB1 397 aaKnown RBP19■□□□□ 0.63
CCDC88B-208ENST00000492980 IGLV3-32A0A0A0MS00 114 aa18.99■□□□□ 0.63
CCDC88B-208ENST00000492980 MEIOCA2RUB1 952 aa18.99■□□□□ 0.63
CCDC88B-208ENST00000492980 ANKRD61A6NGH8 418 aa18.99■□□□□ 0.63
CCDC88B-208ENST00000492980 MS4A18H0YCH9 400 aa18.99■□□□□ 0.63
CCDC88B-208ENST00000492980 ZNF208O43345 1280 aa18.99■□□□□ 0.63
CCDC88B-208ENST00000492980 DKK1O94907 266 aa18.99■□□□□ 0.63
CCDC88B-208ENST00000492980 PRKAR1AP10644 381 aa18.99■□□□□ 0.63
CCDC88B-208ENST00000492980 CCL4P13236 92 aa18.99■□□□□ 0.63
CCDC88B-208ENST00000492980 CTLA4P16410 223 aa18.99■□□□□ 0.63
CCDC88B-208ENST00000492980 PUDPQ08623 228 aa18.99■□□□□ 0.63
CCDC88B-208ENST00000492980 ZP4Q12836 540 aa18.99■□□□□ 0.63
CCDC88B-208ENST00000492980 CBX3Q13185 183 aa18.99■□□□□ 0.63
CCDC88B-208ENST00000492980 OR7A5Q15622 319 aa18.99■□□□□ 0.63
CCDC88B-208ENST00000492980 MS4A18Q3C1V0 323 aa18.99■□□□□ 0.63
CCDC88B-208ENST00000492980 OTPQ5XKR4 325 aa18.99■□□□□ 0.63
CCDC88B-208ENST00000492980 LRRC69Q6ZNQ3 347 aa18.99■□□□□ 0.63
CCDC88B-208ENST00000492980 KDM8Q8N371 416 aa18.99■□□□□ 0.63
CCDC88B-208ENST00000492980 NXPE2Q96DL1 559 aa18.99■□□□□ 0.63
CCDC88B-208ENST00000492980 DEFB126Q9BYW3 111 aa18.99■□□□□ 0.63
CCDC88B-208ENST00000492980 BRD7Q9NPI1 651 aa18.99■□□□□ 0.63
CCDC88B-208ENST00000492980 MRPL22Q9NWU5 206 aaKnown RBP18.99■□□□□ 0.63
CCDC88B-208ENST00000492980 SLCO1C1Q9NYB5 712 aa18.99■□□□□ 0.63
CCDC88B-208ENST00000492980 GPN3Q9UHW5 284 aaPredicted RBP18.99■□□□□ 0.63
CCDC88B-208ENST00000492980 LOC102723996A0A087X1L8 192 aa18.98■□□□□ 0.63
CCDC88B-208ENST00000492980 A0A1B0GTH9 108 aa18.98■□□□□ 0.63
CCDC88B-208ENST00000492980 SHISA8B8ZZ34 492 aa18.98■□□□□ 0.63
CCDC88B-208ENST00000492980 LYRM1O43325 122 aa18.98■□□□□ 0.63
CCDC88B-208ENST00000492980 HLA-DQA2P01906 255 aa18.98■□□□□ 0.63
CCDC88B-208ENST00000492980 TFPIP10646 304 aa18.98■□□□□ 0.63
CCDC88B-208ENST00000492980 MSX1P28360 303 aa18.98■□□□□ 0.63
CCDC88B-208ENST00000492980 MFSD13AQ14CX5 517 aa18.98■□□□□ 0.63
CCDC88B-208ENST00000492980 SF3A2Q15428 464 aaKnown RBP18.98■□□□□ 0.63
CCDC88B-208ENST00000492980 NTRK2Q16620 822 aa18.98■□□□□ 0.63
CCDC88B-208ENST00000492980 MZT2BQ6NZ67 158 aa18.98■□□□□ 0.63
CCDC88B-208ENST00000492980 ELP5Q8TE02 316 aa18.98■□□□□ 0.63
CCDC88B-208ENST00000492980 RASL10BQ96S79 203 aa18.98■□□□□ 0.63
CCDC88B-208ENST00000492980 METTL7AQ9H8H3 244 aa18.98■□□□□ 0.63
CCDC88B-208ENST00000492980 ANKRD10Q9NXR5 420 aa18.98■□□□□ 0.63
CCDC88B-208ENST00000492980 TEKT2Q9UIF3 430 aa18.98■□□□□ 0.63
CCDC88B-208ENST00000492980 WIF1Q9Y5W5 379 aa18.98■□□□□ 0.63
CCDC88B-208ENST00000492980 B3GALT1Q9Y5Z6 326 aa18.98■□□□□ 0.63
CCDC88B-208ENST00000492980 ALPK2Q86TB3 2170 aa18.98■□□□□ 0.63
CCDC88B-208ENST00000492980 OR4C45A6NMZ5 311 aa18.98■□□□□ 0.63
CCDC88B-208ENST00000492980 ZNF593O00488 134 aaPredicted RBP18.98■□□□□ 0.63
CCDC88B-208ENST00000492980 FAM157BP0CG42 384 aa18.98■□□□□ 0.63
CCDC88B-208ENST00000492980 INPP1P49441 399 aa18.98■□□□□ 0.63
CCDC88B-208ENST00000492980 CENPAP49450 140 aa18.98■□□□□ 0.63
CCDC88B-208ENST00000492980 BLVRAP53004 296 aa18.98■□□□□ 0.63
CCDC88B-208ENST00000492980 ETFDHQ16134 617 aa18.98■□□□□ 0.63
CCDC88B-208ENST00000492980 SLC25A53Q5H9E4 307 aa18.98■□□□□ 0.63
CCDC88B-208ENST00000492980 FAM198BQ6UWH4 519 aa18.98■□□□□ 0.63
CCDC88B-208ENST00000492980 OR2G2Q8NGZ5 317 aa18.98■□□□□ 0.63
CCDC88B-208ENST00000492980 ATOH1Q92858 354 aaPredicted RBP18.98■□□□□ 0.63
CCDC88B-208ENST00000492980 TRIM63Q969Q1 353 aa18.98■□□□□ 0.63
CCDC88B-208ENST00000492980 DDIT4LQ96D03 193 aa18.98■□□□□ 0.63
CCDC88B-208ENST00000492980 ABHD1Q96SE0 405 aa18.98■□□□□ 0.63
CCDC88B-208ENST00000492980 RNF121Q9H920 327 aa18.98■□□□□ 0.63
CCDC88B-208ENST00000492980 TRBV5-5A0A0J9YX44 114 aa18.97■□□□□ 0.63
Retrieved 100 of 20,778 RNA–protein pairs in 34.8 ms