RNA–Protein interactions for RNA: ENST00000491592.1

RTN4-215, Transcript of reticulon 4, human

TSL 2

Gene RTN4, Length 860 nt, Biotype retained intron, Subcellular localisation Nucleus, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
RTN4-215	ENST00000491592	HIPK2	Q9H2X6	1198 aa		4.25	□□□□□ -1.73
RTN4-215	ENST00000491592	DSN1	Q9H410	356 aa		4.25	□□□□□ -1.73
RTN4-215	ENST00000491592	RIMS4	Q9H426	269 aa	Predicted RBP	4.25	□□□□□ -1.73
RTN4-215	ENST00000491592	KLHL31	Q9H511	634 aa		4.25	□□□□□ -1.73
RTN4-215	ENST00000491592	EGLN3	Q9H6Z9	239 aa		4.25	□□□□□ -1.73
RTN4-215	ENST00000491592	SIAE	Q9HAT2	523 aa		4.25	□□□□□ -1.73
RTN4-215	ENST00000491592	FZD3	Q9NPG1	666 aa		4.25	□□□□□ -1.73
RTN4-215	ENST00000491592	ZFP57	Q9NU63	452 aa		4.25	□□□□□ -1.73
RTN4-215	ENST00000491592	STMN3	Q9NZ72	180 aa		4.25	□□□□□ -1.73
RTN4-215	ENST00000491592	CCDC167	Q9P0B6	97 aa		4.25	□□□□□ -1.73
RTN4-215	ENST00000491592	ZNF221	Q9UK13	617 aa		4.25	□□□□□ -1.73
RTN4-215	ENST00000491592	IKZF3	Q9UKT9	509 aa		4.25	□□□□□ -1.73
RTN4-215	ENST00000491592	ZNF346	Q9UL40	294 aa	Known RBP	4.25	□□□□□ -1.73
RTN4-215	ENST00000491592	TPRKB	Q9Y3C4	175 aa		4.25	□□□□□ -1.73
RTN4-215	ENST00000491592	ORC6	Q9Y5N6	252 aa		4.25	□□□□□ -1.73
RTN4-215	ENST00000491592	DICER1	Q9UPY3	1922 aa	Known RBP	4.25	□□□□□ -1.73
RTN4-215	ENST00000491592	TRAV24	A0A0B4J272	114 aa		4.24	□□□□□ -1.73
RTN4-215	ENST00000491592		A0A1W2PP18	115 aa		4.24	□□□□□ -1.73
RTN4-215	ENST00000491592	FEZF1	A0PJY2	475 aa		4.24	□□□□□ -1.73
RTN4-215	ENST00000491592	CLDN24	A6NM45	220 aa		4.24	□□□□□ -1.73
RTN4-215	ENST00000491592	HSPB2	A8KAH6	182 aa		4.24	□□□□□ -1.73
RTN4-215	ENST00000491592	CENPX	A8MT69	81 aa		4.24	□□□□□ -1.73
RTN4-215	ENST00000491592	HHLA1	C9JL84	531 aa		4.24	□□□□□ -1.73
RTN4-215	ENST00000491592	PRSS46	E5RG02	174 aa		4.24	□□□□□ -1.73
RTN4-215	ENST00000491592	LOC110117498-PIK3R3	F6TDL0	507 aa		4.24	□□□□□ -1.73
RTN4-215	ENST00000491592	NPIPA3	F8WFD2	350 aa		4.24	□□□□□ -1.73
RTN4-215	ENST00000491592	MKRN2OS	H3BPM6	223 aa		4.24	□□□□□ -1.73
RTN4-215	ENST00000491592	TMX2-CTNND1	H3BSU7	103 aa		4.24	□□□□□ -1.73
RTN4-215	ENST00000491592	BTN3A3	O00478	584 aa		4.24	□□□□□ -1.73
RTN4-215	ENST00000491592	VCY	O14598	125 aa		4.24	□□□□□ -1.73
RTN4-215	ENST00000491592	ARPC1B	O15143	372 aa	Known RBP	4.24	□□□□□ -1.73
RTN4-215	ENST00000491592	INPP4B	O15327	924 aa		4.24	□□□□□ -1.73
RTN4-215	ENST00000491592	GRAP2	O75791	330 aa		4.24	□□□□□ -1.73
RTN4-215	ENST00000491592	CCNK	O75909	580 aa		4.24	□□□□□ -1.73
RTN4-215	ENST00000491592	ETHE1	O95571	254 aa		4.24	□□□□□ -1.73
RTN4-215	ENST00000491592	ALPL	P05186	524 aa		4.24	□□□□□ -1.73
RTN4-215	ENST00000491592	F7	P08709	466 aa	Predicted RBP	4.24	□□□□□ -1.73
RTN4-215	ENST00000491592	HOXC6	P09630	235 aa		4.24	□□□□□ -1.73
RTN4-215	ENST00000491592	PSG1	P11464	419 aa		4.24	□□□□□ -1.73
RTN4-215	ENST00000491592	CD1E	P15812	388 aa		4.24	□□□□□ -1.73
RTN4-215	ENST00000491592	NCK1	P16333	377 aa		4.24	□□□□□ -1.73
RTN4-215	ENST00000491592	ITGA2	P17301	1181 aa		4.24	□□□□□ -1.73
RTN4-215	ENST00000491592	CXCR2	P25025	360 aa		4.24	□□□□□ -1.73
RTN4-215	ENST00000491592	SHMT2	P34897	504 aa		4.24	□□□□□ -1.73
RTN4-215	ENST00000491592	EPHX2	P34913	555 aa		4.24	□□□□□ -1.73
RTN4-215	ENST00000491592	MAS1L	P35410	378 aa		4.24	□□□□□ -1.73
RTN4-215	ENST00000491592	AVPR1A	P37288	418 aa		4.24	□□□□□ -1.73
RTN4-215	ENST00000491592	DDOST	P39656	456 aa		4.24	□□□□□ -1.73
RTN4-215	ENST00000491592	GSK3B	P49841	420 aa		4.24	□□□□□ -1.73
RTN4-215	ENST00000491592	ART1	P52961	327 aa		4.24	□□□□□ -1.73
RTN4-215	ENST00000491592	MLLT10	P55197	1068 aa		4.24	□□□□□ -1.73
RTN4-215	ENST00000491592	OR2B6	P58173	313 aa		4.24	□□□□□ -1.73
RTN4-215	ENST00000491592	CRADD	P78560	199 aa		4.24	□□□□□ -1.73
RTN4-215	ENST00000491592	IFITM3	Q01628	133 aa		4.24	□□□□□ -1.73
RTN4-215	ENST00000491592	PRKCD	Q05655	676 aa		4.24	□□□□□ -1.73
RTN4-215	ENST00000491592	CD300C	Q08708	224 aa		4.24	□□□□□ -1.73
RTN4-215	ENST00000491592	RBBP4	Q09028	425 aa		4.24	□□□□□ -1.73
RTN4-215	ENST00000491592	AQP6	Q13520	282 aa		4.24	□□□□□ -1.73
RTN4-215	ENST00000491592	EXOSC2	Q13868	293 aa	Known RBP	4.24	□□□□□ -1.73
RTN4-215	ENST00000491592	CDK10	Q15131	360 aa		4.24	□□□□□ -1.73
RTN4-215	ENST00000491592	NPTX1	Q15818	432 aa		4.24	□□□□□ -1.73
RTN4-215	ENST00000491592	FAM189A2	Q15884	450 aa		4.24	□□□□□ -1.73
RTN4-215	ENST00000491592	HSPB2	Q16082	182 aa		4.24	□□□□□ -1.73
RTN4-215	ENST00000491592	DUSP7	Q16829	419 aa		4.24	□□□□□ -1.73
RTN4-215	ENST00000491592	C5orf64	Q2M2E5	130 aa		4.24	□□□□□ -1.73
RTN4-215	ENST00000491592	PAN3	Q58A45	887 aa	Known RBP	4.24	□□□□□ -1.73
RTN4-215	ENST00000491592	SYT6	Q5T7P8	510 aa	Predicted RBP	4.24	□□□□□ -1.73
RTN4-215	ENST00000491592	FKBP1C	Q5VVH2	108 aa		4.24	□□□□□ -1.73
RTN4-215	ENST00000491592	RSBN1	Q5VWQ0	802 aa	Predicted RBP	4.24	□□□□□ -1.73
RTN4-215	ENST00000491592	BSPRY	Q5W0U4	402 aa		4.24	□□□□□ -1.73
RTN4-215	ENST00000491592	NCBP2-AS2	Q69YL0	99 aa		4.24	□□□□□ -1.73
RTN4-215	ENST00000491592	OR52W1	Q6IF63	320 aa		4.24	□□□□□ -1.73
RTN4-215	ENST00000491592	TRNP1	Q6NT89	227 aa		4.24	□□□□□ -1.73
RTN4-215	ENST00000491592	ADAM5	Q6NVV9	412 aa		4.24	□□□□□ -1.73
RTN4-215	ENST00000491592	FAM122C	Q6P4D5	195 aa		4.24	□□□□□ -1.73
RTN4-215	ENST00000491592	PARM1	Q6UWI2	310 aa		4.24	□□□□□ -1.73
RTN4-215	ENST00000491592	PLXDC2	Q6UX71	529 aa		4.24	□□□□□ -1.73
RTN4-215	ENST00000491592	GDPD4	Q6W3E5	623 aa		4.24	□□□□□ -1.73
RTN4-215	ENST00000491592	USP43	Q70EL4	1123 aa		4.24	□□□□□ -1.73
RTN4-215	ENST00000491592	DPY19L4	Q7Z388	723 aa		4.24	□□□□□ -1.73
RTN4-215	ENST00000491592	SMIM15	Q7Z3B0	74 aa		4.24	□□□□□ -1.73
RTN4-215	ENST00000491592	P2RY8	Q86VZ1	359 aa		4.24	□□□□□ -1.73
RTN4-215	ENST00000491592	HORMAD1	Q86X24	394 aa		4.24	□□□□□ -1.73
RTN4-215	ENST00000491592	GPALPP1	Q8IXQ4	340 aa		4.24	□□□□□ -1.73
RTN4-215	ENST00000491592	KLHDC8B	Q8IXV7	354 aa		4.24	□□□□□ -1.73
RTN4-215	ENST00000491592	SLC35F3	Q8IY50	421 aa		4.24	□□□□□ -1.73
RTN4-215	ENST00000491592	CPNE9	Q8IYJ1	553 aa		4.24	□□□□□ -1.73
RTN4-215	ENST00000491592	ZNF100	Q8IYN0	542 aa		4.24	□□□□□ -1.73
RTN4-215	ENST00000491592	TDH	Q8IZJ6	230 aa		4.24	□□□□□ -1.73
RTN4-215	ENST00000491592	ZNF567	Q8N184	647 aa		4.24	□□□□□ -1.73
RTN4-215	ENST00000491592	TMEM199	Q8N511	208 aa		4.24	□□□□□ -1.73
RTN4-215	ENST00000491592	PARP16	Q8N5Y8	322 aa		4.24	□□□□□ -1.73
RTN4-215	ENST00000491592	TRAM1L1	Q8N609	369 aa		4.24	□□□□□ -1.73
RTN4-215	ENST00000491592	OR5AU1	Q8NGC0	362 aa		4.24	□□□□□ -1.73
RTN4-215	ENST00000491592	OR52E4	Q8NGH9	312 aa		4.24	□□□□□ -1.73
RTN4-215	ENST00000491592	OR4C15	Q8NGM1	316 aa		4.24	□□□□□ -1.73
RTN4-215	ENST00000491592	OR5M1	Q8NGP8	315 aa		4.24	□□□□□ -1.73
RTN4-215	ENST00000491592	OR2AJ1	Q8NGZ0	328 aa		4.24	□□□□□ -1.73
RTN4-215	ENST00000491592	HMGCLL1	Q8TB92	370 aa		4.24	□□□□□ -1.73
RTN4-215	ENST00000491592	ACER1	Q8TDN7	264 aa		4.24	□□□□□ -1.73

Retrieved 100 of 20,778 RNA–protein pairs in 52 ms