RNA–Protein interactions for RNA: ENST00000488727.5

CCM2-216, Transcript of CCM2 scaffold protein, humanhuman

TSL 5

Gene CCM2, Length 1,719 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCM2-216ENST00000488727 UGT2A1Q9Y4X1 527 aa17.33■□□□□ 0.37
CCM2-216ENST00000488727 KIAA1549Q9HCM3 1950 aa17.33■□□□□ 0.36
CCM2-216ENST00000488727 TMEM72A0PK05 275 aa17.33■□□□□ 0.36
CCM2-216ENST00000488727 FUOMA2VDF0 154 aa17.33■□□□□ 0.36
CCM2-216ENST00000488727 UPK1BO75841 260 aa17.33■□□□□ 0.36
CCM2-216ENST00000488727 HTR1FP30939 366 aa17.33■□□□□ 0.36
CCM2-216ENST00000488727 BCAP31P51572 246 aa17.33■□□□□ 0.36
CCM2-216ENST00000488727 CTBP2P56545 445 aa17.33■□□□□ 0.36
CCM2-216ENST00000488727 TPBGQ13641 420 aa17.33■□□□□ 0.36
CCM2-216ENST00000488727 BCL2A1Q16548 175 aa17.33■□□□□ 0.36
CCM2-216ENST00000488727 ALG10BQ5I7T1 473 aa17.33■□□□□ 0.36
CCM2-216ENST00000488727 ULK3Q6PHR2 472 aa17.33■□□□□ 0.36
CCM2-216ENST00000488727 SAMD8Q96LT4 415 aa17.33■□□□□ 0.36
CCM2-216ENST00000488727 HS6ST2Q96MM7 605 aa17.33■□□□□ 0.36
CCM2-216ENST00000488727 CRNNQ9UBG3 495 aaPredicted RBP17.33■□□□□ 0.36
CCM2-216ENST00000488727 IGHA1P01876 353 aa17.32■□□□□ 0.36
CCM2-216ENST00000488727 LIMS3P0CW19 117 aa17.32■□□□□ 0.36
CCM2-216ENST00000488727 LIMS4P0CW20 117 aa17.32■□□□□ 0.36
CCM2-216ENST00000488727 RANBP1P43487 201 aa17.32■□□□□ 0.36
CCM2-216ENST00000488727 PSMD7P51665 324 aa17.32■□□□□ 0.36
CCM2-216ENST00000488727 PLEKHG7Q6ZR37 379 aa17.32■□□□□ 0.36
CCM2-216ENST00000488727 DOLPP1Q86YN1 238 aa17.32■□□□□ 0.36
CCM2-216ENST00000488727 GID4Q8IVV7 300 aa17.32■□□□□ 0.36
CCM2-216ENST00000488727 ZNF485Q8NCK3 441 aa17.32■□□□□ 0.36
CCM2-216ENST00000488727 FANK1Q8TC84 345 aa17.32■□□□□ 0.36
CCM2-216ENST00000488727 DNAJA4Q8WW22 397 aaPredicted RBP17.32■□□□□ 0.36
CCM2-216ENST00000488727 ADGRG7Q96K78 797 aa17.32■□□□□ 0.36
CCM2-216ENST00000488727 OR11A1Q9GZK7 315 aa17.32■□□□□ 0.36
CCM2-216ENST00000488727 OR52D1Q9H346 318 aa17.32■□□□□ 0.36
CCM2-216ENST00000488727 EXOSC4Q9NPD3 245 aaKnown RBP17.32■□□□□ 0.36
CCM2-216ENST00000488727 SERINC1Q9NRX5 453 aa17.32■□□□□ 0.36
CCM2-216ENST00000488727 OSGIN2Q9Y236 505 aa17.32■□□□□ 0.36
CCM2-216ENST00000488727 A0A0J9YW62 118 aa17.31■□□□□ 0.36
CCM2-216ENST00000488727 PNMA8CA0A1B0GUJ8 204 aa17.31■□□□□ 0.36
CCM2-216ENST00000488727 PRRG2O14669 202 aa17.31■□□□□ 0.36
CCM2-216ENST00000488727 CHP2O43745 196 aa17.31■□□□□ 0.36
CCM2-216ENST00000488727 IFI30P13284 250 aa17.31■□□□□ 0.36
CCM2-216ENST00000488727 MAKP20794 623 aa17.31■□□□□ 0.36
CCM2-216ENST00000488727 CXCR1P25024 350 aa17.31■□□□□ 0.36
CCM2-216ENST00000488727 ZNF800Q2TB10 664 aaPredicted RBP eCLIP17.31■□□□□ 0.36
CCM2-216ENST00000488727 EIF2S3LQ2VIR3 472 aaKnown RBP17.31■□□□□ 0.36
CCM2-216ENST00000488727 TMEM176BQ3YBM2 270 aaPredicted RBP17.31■□□□□ 0.36
CCM2-216ENST00000488727 LIPKQ5VXJ0 399 aa17.31■□□□□ 0.36
CCM2-216ENST00000488727 ZNF585AQ6P3V2 769 aa17.31■□□□□ 0.36
CCM2-216ENST00000488727 C3P1Q6ZMU1 363 aa17.31■□□□□ 0.36
CCM2-216ENST00000488727 CCDC190Q86UF4 302 aa17.31■□□□□ 0.36
CCM2-216ENST00000488727 OR52L1Q8NGH7 329 aa17.31■□□□□ 0.36
CCM2-216ENST00000488727 PFN4Q8NHR9 129 aa17.31■□□□□ 0.36
CCM2-216ENST00000488727 TRMT61AQ96FX7 289 aaKnown RBP17.31■□□□□ 0.36
CCM2-216ENST00000488727 ARL5BQ96KC2 179 aa17.31■□□□□ 0.36
CCM2-216ENST00000488727 KLHL15Q96M94 604 aa17.31■□□□□ 0.36
CCM2-216ENST00000488727 ALKBH4Q9NXW9 302 aa17.31■□□□□ 0.36
CCM2-216ENST00000488727 SH3BGRL2Q9UJC5 107 aa17.31■□□□□ 0.36
CCM2-216ENST00000488727 ZC3H12DA2A288 527 aaKnown RBP17.3■□□□□ 0.36
CCM2-216ENST00000488727 BHLHE40O14503 412 aa17.3■□□□□ 0.36
CCM2-216ENST00000488727 EIF1AYO14602 144 aaKnown RBP17.3■□□□□ 0.36
CCM2-216ENST00000488727 RCBTB2O95199 551 aa17.3■□□□□ 0.36
CCM2-216ENST00000488727 CH25HO95992 272 aa17.3■□□□□ 0.36
CCM2-216ENST00000488727 RBM34P42696 430 aaKnown RBP17.3■□□□□ 0.36
CCM2-216ENST00000488727 FXYD6P3P58550 94 aa17.3■□□□□ 0.36
CCM2-216ENST00000488727 ACSM1Q08AH1 577 aa17.3■□□□□ 0.36
CCM2-216ENST00000488727 PM20D2Q8IYS1 436 aa17.3■□□□□ 0.36
CCM2-216ENST00000488727 SLC43A2Q8N370 569 aa17.3■□□□□ 0.36
CCM2-216ENST00000488727 ZNF426Q9BUY5 554 aa17.3■□□□□ 0.36
CCM2-216ENST00000488727 NUAK2Q9H093 628 aa17.3■□□□□ 0.36
CCM2-216ENST00000488727 C12orf10Q9HB07 376 aa17.3■□□□□ 0.36
CCM2-216ENST00000488727 HINT3Q9NQE9 182 aaKnown RBP17.3■□□□□ 0.36
CCM2-216ENST00000488727 SF3B6Q9Y3B4 125 aaKnown RBP17.3■□□□□ 0.36
CCM2-216ENST00000488727 MED31Q9Y3C7 131 aa17.3■□□□□ 0.36
CCM2-216ENST00000488727 SPIN1Q9Y657 262 aaPredicted RBP17.3■□□□□ 0.36
CCM2-216ENST00000488727 A0A1W2PNR3 127 aa17.3■□□□□ 0.36
CCM2-216ENST00000488727 ELOA3DA6NLF2 546 aaPredicted RBP17.3■□□□□ 0.36
CCM2-216ENST00000488727 TNFSF11O14788 317 aa17.3■□□□□ 0.36
CCM2-216ENST00000488727 ZNF208O43345 1280 aa17.3■□□□□ 0.36
CCM2-216ENST00000488727 TSPAN19P0C672 248 aa17.3■□□□□ 0.36
CCM2-216ENST00000488727 RPS19P39019 145 aaKnown RBP17.3■□□□□ 0.36
CCM2-216ENST00000488727 EGR4Q05215 589 aa17.3■□□□□ 0.36
CCM2-216ENST00000488727 ELOA3BQ3SY89 546 aa17.3■□□□□ 0.36
CCM2-216ENST00000488727 ARMC4Q5T2S8 1044 aa17.3■□□□□ 0.36
CCM2-216ENST00000488727 RTL6Q6ICC9 239 aa17.3■□□□□ 0.36
CCM2-216ENST00000488727 PLXDC2Q6UX71 529 aa17.3■□□□□ 0.36
CCM2-216ENST00000488727 ESPNLQ6ZVH7 1005 aa17.3■□□□□ 0.36
CCM2-216ENST00000488727 SNX29P2Q8IUI4 249 aa17.3■□□□□ 0.36
CCM2-216ENST00000488727 CDK20Q8IZL9 346 aa17.3■□□□□ 0.36
CCM2-216ENST00000488727 LNX2Q8N448 690 aa17.3■□□□□ 0.36
CCM2-216ENST00000488727 RPRMLQ8N4K4 120 aa17.3■□□□□ 0.36
CCM2-216ENST00000488727 PARP16Q8N5Y8 322 aa17.3■□□□□ 0.36
CCM2-216ENST00000488727 MEIOBQ8N635 442 aa17.3■□□□□ 0.36
CCM2-216ENST00000488727 ELOA3Q8NG57 546 aa17.3■□□□□ 0.36
CCM2-216ENST00000488727 OR52N1Q8NH53 320 aa17.3■□□□□ 0.36
CCM2-216ENST00000488727 RNF217Q8TC41 542 aa17.3■□□□□ 0.36
CCM2-216ENST00000488727 SLC25A43Q8WUT9 341 aaPredicted RBP17.3■□□□□ 0.36
CCM2-216ENST00000488727 UFD1Q92890 307 aa17.3■□□□□ 0.36
CCM2-216ENST00000488727 DNAJA3Q96EY1 480 aa17.3■□□□□ 0.36
CCM2-216ENST00000488727 SMURF1Q9HCE7 757 aa17.3■□□□□ 0.36
CCM2-216ENST00000488727 C20orf141Q9NUB4 165 aa17.3■□□□□ 0.36
CCM2-216ENST00000488727 TXNL4BQ9NX01 149 aaKnown RBP17.3■□□□□ 0.36
CCM2-216ENST00000488727 FAM215AQ9Y5M1 114 aa17.3■□□□□ 0.36
CCM2-216ENST00000488727 ARHGAP21Q5T5U3 1957 aa17.29■□□□□ 0.36
CCM2-216ENST00000488727 IGKV1D-42A0A075B6H8 117 aa17.29■□□□□ 0.36
Retrieved 100 of 20,778 RNA–protein pairs in 25.9 ms