RNA–Protein interactions for RNA: ENST00000484528.1

USP40-215, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 2

Gene USP40, Length 933 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-215ENST00000484528 SLC26A7Q8TE54 656 aa18.6■□□□□ 0.57
USP40-215ENST00000484528 STON2Q8WXE9 905 aa18.6■□□□□ 0.57
USP40-215ENST00000484528 ZNF75AQ96N20 296 aa18.6■□□□□ 0.57
USP40-215ENST00000484528 MRPL37Q9BZE1 423 aaKnown RBP18.6■□□□□ 0.57
USP40-215ENST00000484528 LYNX1G3V0Z9 82 aa18.59■□□□□ 0.57
USP40-215ENST00000484528 RNF13O43567 381 aa18.59■□□□□ 0.57
USP40-215ENST00000484528 RAB36O95755 333 aa18.59■□□□□ 0.57
USP40-215ENST00000484528 C8BP07358 591 aa18.59■□□□□ 0.57
USP40-215ENST00000484528 ERCC1P07992 297 aaPredicted RBP18.59■□□□□ 0.57
USP40-215ENST00000484528 LYNX1P0DP58 116 aa18.59■□□□□ 0.57
USP40-215ENST00000484528 RAB1AP62820 205 aa18.59■□□□□ 0.57
USP40-215ENST00000484528 TRMT5Q32P41 509 aaKnown RBP18.59■□□□□ 0.57
USP40-215ENST00000484528 FAM120AOSQ5T036 256 aa18.59■□□□□ 0.57
USP40-215ENST00000484528 TTC33Q6PID6 262 aaPredicted RBP18.59■□□□□ 0.57
USP40-215ENST00000484528 SNX32Q86XE0 403 aa18.59■□□□□ 0.57
USP40-215ENST00000484528 FGFBP3Q8TAT2 258 aa18.59■□□□□ 0.57
USP40-215ENST00000484528 NEU4Q8WWR8 484 aaPredicted RBP18.59■□□□□ 0.57
USP40-215ENST00000484528 TMEM158Q8WZ71 300 aa18.59■□□□□ 0.57
USP40-215ENST00000484528 NANSQ9NR45 359 aa18.59■□□□□ 0.57
USP40-215ENST00000484528 TRAPPC13A5PLN9 417 aa18.58■□□□□ 0.56
USP40-215ENST00000484528 TGFAP01135 160 aa18.58■□□□□ 0.56
USP40-215ENST00000484528 UMPSP11172 480 aa18.58■□□□□ 0.56
USP40-215ENST00000484528 ZNF35P13682 527 aa18.58■□□□□ 0.56
USP40-215ENST00000484528 SRD5A1P18405 259 aa18.58■□□□□ 0.56
USP40-215ENST00000484528 IL2RGP31785 369 aa18.58■□□□□ 0.56
USP40-215ENST00000484528 CRYBA2P53672 197 aa18.58■□□□□ 0.56
USP40-215ENST00000484528 SRSF2Q01130 221 aaKnown RBP18.58■□□□□ 0.56
USP40-215ENST00000484528 RAB39AQ14964 217 aa18.58■□□□□ 0.56
USP40-215ENST00000484528 SKA3Q8IX90 412 aa18.58■□□□□ 0.56
USP40-215ENST00000484528 ZNF540Q8NDQ6 660 aa18.58■□□□□ 0.56
USP40-215ENST00000484528 TMEM54Q969K7 222 aa18.58■□□□□ 0.56
USP40-215ENST00000484528 MRPL24Q96A35 216 aaKnown RBP18.58■□□□□ 0.56
USP40-215ENST00000484528 SYT3Q9BQG1 590 aa18.58■□□□□ 0.56
USP40-215ENST00000484528 TAS2R5Q9NYW4 299 aa18.58■□□□□ 0.56
USP40-215ENST00000484528 GLTPQ9NZD2 209 aa18.58■□□□□ 0.56
USP40-215ENST00000484528 FBXO9Q9UK97 447 aaPredicted RBP18.58■□□□□ 0.56
USP40-215ENST00000484528 FZR1Q9UM11 496 aa18.58■□□□□ 0.56
USP40-215ENST00000484528 SVEP1Q4LDE5 3571 aa18.57■□□□□ 0.56
USP40-215ENST00000484528 FBP2O00757 339 aa18.57■□□□□ 0.56
USP40-215ENST00000484528 TNFRSF1BP20333 461 aa18.57■□□□□ 0.56
USP40-215ENST00000484528 VMACQ2NL98 169 aa18.57■□□□□ 0.56
USP40-215ENST00000484528 RABL3Q5HYI8 236 aa18.57■□□□□ 0.56
USP40-215ENST00000484528 INTS11Q5TA45 600 aaKnown RBP18.57■□□□□ 0.56
USP40-215ENST00000484528 HDXQ7Z353 690 aa18.57■□□□□ 0.56
USP40-215ENST00000484528 SLC30A8Q8IWU4 369 aa18.57■□□□□ 0.56
USP40-215ENST00000484528 OR6X1Q8NH79 312 aa18.57■□□□□ 0.56
USP40-215ENST00000484528 UBASH3BQ8TF42 649 aa18.57■□□□□ 0.56
USP40-215ENST00000484528 TSPEARQ8WU66 669 aa18.57■□□□□ 0.56
USP40-215ENST00000484528 SNX18Q96RF0 628 aa18.57■□□□□ 0.56
USP40-215ENST00000484528 UBL3O95164 117 aa18.56■□□□□ 0.56
USP40-215ENST00000484528 TCN1P20061 433 aaPredicted RBP18.56■□□□□ 0.56
USP40-215ENST00000484528 GIFP27352 417 aa18.56■□□□□ 0.56
USP40-215ENST00000484528 ALDH3B1P43353 468 aa18.56■□□□□ 0.56
USP40-215ENST00000484528 GZMMP51124 257 aa18.56■□□□□ 0.56
USP40-215ENST00000484528 GALK2Q01415 458 aa18.56■□□□□ 0.56
USP40-215ENST00000484528 SF3A3Q12874 501 aaKnown RBP eCLIP18.56■□□□□ 0.56
USP40-215ENST00000484528 MAD2L1BPQ15013 274 aaPredicted RBP18.56■□□□□ 0.56
USP40-215ENST00000484528 TRIP10Q15642 601 aa18.56■□□□□ 0.56
USP40-215ENST00000484528 GKAP1Q5VSY0 366 aaPredicted RBP18.56■□□□□ 0.56
USP40-215ENST00000484528 NANOGP8Q6NSW7 305 aa18.56■□□□□ 0.56
USP40-215ENST00000484528 NANOGNBQ7Z5D8 188 aa18.56■□□□□ 0.56
USP40-215ENST00000484528 LRP11Q86VZ4 500 aa18.56■□□□□ 0.56
USP40-215ENST00000484528 ZNF786Q8N393 782 aa18.56■□□□□ 0.56
USP40-215ENST00000484528 ZNF566Q969W8 418 aa18.56■□□□□ 0.56
USP40-215ENST00000484528 SH3GL3Q99963 347 aa18.56■□□□□ 0.56
USP40-215ENST00000484528 PRSS27Q9BQR3 290 aa18.56■□□□□ 0.56
USP40-215ENST00000484528 ZNF426Q9BUY5 554 aa18.56■□□□□ 0.56
USP40-215ENST00000484528 TMEM120AQ9BXJ8 343 aa18.56■□□□□ 0.56
USP40-215ENST00000484528 NANOGQ9H9S0 305 aa18.56■□□□□ 0.56
USP40-215ENST00000484528 MYEF2Q9P2K5 600 aaKnown RBP18.56■□□□□ 0.56
USP40-215ENST00000484528 SPEF1Q9Y4P9 236 aa18.56■□□□□ 0.56
USP40-215ENST00000484528 M0R233 179 aa18.55■□□□□ 0.56
USP40-215ENST00000484528 SYNGR3O43761 229 aa18.55■□□□□ 0.56
USP40-215ENST00000484528 SHOX2O60902 331 aaPredicted RBP18.55■□□□□ 0.56
USP40-215ENST00000484528 LILRA1O75019 489 aa18.55■□□□□ 0.56
USP40-215ENST00000484528 HIST1H2ABP04908 130 aa18.55■□□□□ 0.56
USP40-215ENST00000484528 APEX1P27695 318 aaKnown RBP18.55■□□□□ 0.56
USP40-215ENST00000484528 ZP4Q12836 540 aa18.55■□□□□ 0.56
USP40-215ENST00000484528 LRFN4Q6PJG9 635 aa18.55■□□□□ 0.56
USP40-215ENST00000484528 HIST3H2AQ7L7L0 130 aa18.55■□□□□ 0.56
USP40-215ENST00000484528 CARM1Q86X55 608 aa18.55■□□□□ 0.56
USP40-215ENST00000484528 ZNF584Q8IVC4 421 aa18.55■□□□□ 0.56
USP40-215ENST00000484528 SLC22A24Q8N4F4 322 aa18.55■□□□□ 0.56
USP40-215ENST00000484528 HIST1H2ACQ93077 130 aa18.55■□□□□ 0.56
USP40-215ENST00000484528 MPP4Q96JB8 637 aa18.55■□□□□ 0.56
USP40-215ENST00000484528 PCDHAC1Q9H158 963 aa18.55■□□□□ 0.56
USP40-215ENST00000484528 MEPEQ9NQ76 525 aaPredicted RBP18.55■□□□□ 0.56
USP40-215ENST00000484528 REV1Q9UBZ9 1251 aa18.55■□□□□ 0.56
USP40-215ENST00000484528 ZNF229Q9UJW7 825 aa18.55■□□□□ 0.56
USP40-215ENST00000484528 SH3GLB1Q9Y371 365 aa18.55■□□□□ 0.56
USP40-215ENST00000484528 BLOC1S5-TXNDC5H3BN57 136 aa18.54■□□□□ 0.56
USP40-215ENST00000484528 ASAH2BP0C7U1 165 aa18.54■□□□□ 0.56
USP40-215ENST00000484528 PGA4P0DJD7 388 aa18.54■□□□□ 0.56
USP40-215ENST00000484528 PGA3P0DJD8 388 aa18.54■□□□□ 0.56
USP40-215ENST00000484528 GLRXP35754 106 aa18.54■□□□□ 0.56
USP40-215ENST00000484528 CHN2P52757 468 aa18.54■□□□□ 0.56
USP40-215ENST00000484528 SEC24CP53992 1094 aa18.54■□□□□ 0.56
USP40-215ENST00000484528 MYBPC1Q00872 1141 aa18.54■□□□□ 0.56
USP40-215ENST00000484528 CCNIQ14094 377 aa18.54■□□□□ 0.56
USP40-215ENST00000484528 CR1LQ2VPA4 569 aa18.54■□□□□ 0.56
Retrieved 100 of 20,778 RNA–protein pairs in 61.1 ms