RNA–Protein interactions for RNA: ENST00000482217.1

VPS41-212, Transcript of VPS41, HOPS complex subunit, humanhuman

TSL 5

Gene VPS41, Length 951 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS41-212ENST00000482217 SLC39A11Q8N1S5 342 aa3.57□□□□□ -1.84
VPS41-212ENST00000482217 KIF2BQ8N4N8 673 aa3.57□□□□□ -1.84
VPS41-212ENST00000482217 JAGN1Q8N5M9 183 aa3.57□□□□□ -1.84
VPS41-212ENST00000482217 MS4A15Q8N5U1 240 aa3.57□□□□□ -1.84
VPS41-212ENST00000482217 TMEM99Q8N816 258 aa3.57□□□□□ -1.84
VPS41-212ENST00000482217 C12orf29Q8N999 325 aa3.57□□□□□ -1.84
VPS41-212ENST00000482217 RNF149Q8NC42 400 aa3.57□□□□□ -1.84
VPS41-212ENST00000482217 PPFIBP2Q8ND30 876 aa3.57□□□□□ -1.84
VPS41-212ENST00000482217 PXT1Q8NFP0 134 aa3.57□□□□□ -1.84
VPS41-212ENST00000482217 OR9Q2Q8NGE9 314 aa3.57□□□□□ -1.84
VPS41-212ENST00000482217 OR2AE1Q8NHA4 323 aa3.57□□□□□ -1.84
VPS41-212ENST00000482217 KIR2DL5BQ8NHK3 375 aa3.57□□□□□ -1.84
VPS41-212ENST00000482217 CNIH3Q8TBE1 160 aa3.57□□□□□ -1.84
VPS41-212ENST00000482217 RNF128Q8TEB7 428 aa3.57□□□□□ -1.84
VPS41-212ENST00000482217 RNF138Q8WVD3 245 aa3.57□□□□□ -1.84
VPS41-212ENST00000482217 NELFBQ8WX92 580 aa3.57□□□□□ -1.84
VPS41-212ENST00000482217 BORCS5Q969J3 196 aa3.57□□□□□ -1.84
VPS41-212ENST00000482217 ANKRD9Q96BM1 317 aaPredicted RBP3.57□□□□□ -1.84
VPS41-212ENST00000482217 PCED1BQ96HM7 432 aa3.57□□□□□ -1.84
VPS41-212ENST00000482217 NSL1Q96IY1 281 aa3.57□□□□□ -1.84
VPS41-212ENST00000482217 FAM210BQ96KR6 192 aa3.57□□□□□ -1.84
VPS41-212ENST00000482217 NSMCE3Q96MG7 304 aa3.57□□□□□ -1.84
VPS41-212ENST00000482217 KCNA7Q96RP8 456 aa3.57□□□□□ -1.84
VPS41-212ENST00000482217 ERGIC2Q96RQ1 377 aa3.57□□□□□ -1.84
VPS41-212ENST00000482217 CNN2Q99439 309 aaKnown RBP3.57□□□□□ -1.84
VPS41-212ENST00000482217 LGMNQ99538 433 aa3.57□□□□□ -1.84
VPS41-212ENST00000482217 BARHL1Q9BZE3 327 aa3.57□□□□□ -1.84
VPS41-212ENST00000482217 FAM49AQ9H0Q0 323 aaPredicted RBP3.57□□□□□ -1.84
VPS41-212ENST00000482217 ING2Q9H160 280 aa3.57□□□□□ -1.84
VPS41-212ENST00000482217 NXF5Q9H1B4 397 aaKnown RBP3.57□□□□□ -1.84
VPS41-212ENST00000482217 DEFB129Q9H1M3 183 aa3.57□□□□□ -1.84
VPS41-212ENST00000482217 TLE6Q9H808 572 aa3.57□□□□□ -1.84
VPS41-212ENST00000482217 ZNF430Q9H8G1 570 aaPredicted RBP3.57□□□□□ -1.84
VPS41-212ENST00000482217 VCX3AQ9NNX9 186 aa3.57□□□□□ -1.84
VPS41-212ENST00000482217 GDF3Q9NR23 364 aa3.57□□□□□ -1.84
VPS41-212ENST00000482217 AGPAT4Q9NRZ5 378 aa3.57□□□□□ -1.84
VPS41-212ENST00000482217 PAK1IP1Q9NWT1 392 aaPredicted RBP3.57□□□□□ -1.84
VPS41-212ENST00000482217 SLC25A37Q9NYZ2 338 aa3.57□□□□□ -1.84
VPS41-212ENST00000482217 KCNG2Q9UJ96 466 aa3.57□□□□□ -1.84
VPS41-212ENST00000482217 NUP50Q9UKX7 468 aa3.57□□□□□ -1.84
VPS41-212ENST00000482217 TFR2Q9UP52 801 aa3.57□□□□□ -1.84
VPS41-212ENST00000482217 FKBP7Q9Y680 259 aa3.57□□□□□ -1.84
VPS41-212ENST00000482217 TAF1P21675 1872 aa3.56□□□□□ -1.84
VPS41-212ENST00000482217 CEMIPQ8WUJ3 1361 aa3.56□□□□□ -1.84
VPS41-212ENST00000482217 USP47Q96K76 1375 aa3.56□□□□□ -1.84
VPS41-212ENST00000482217 A0A1W2PRF3 423 aa3.56□□□□□ -1.84
VPS41-212ENST00000482217 A0A1W2PRM7 423 aa3.56□□□□□ -1.84
VPS41-212ENST00000482217 MYMKA6NI61 221 aa3.56□□□□□ -1.84
VPS41-212ENST00000482217 SRRM3A6NNA2 597 aaPredicted RBP3.56□□□□□ -1.84
VPS41-212ENST00000482217 SYCE1LA8MT33 242 aa3.56□□□□□ -1.84
VPS41-212ENST00000482217 ATP6V1G2-DDX39BF2Z307 99 aa3.56□□□□□ -1.84
VPS41-212ENST00000482217 G3V3Y1 287 aa3.56□□□□□ -1.84
VPS41-212ENST00000482217 DCTN6O00399 190 aa3.56□□□□□ -1.84
VPS41-212ENST00000482217 KPNA3O00505 521 aaPredicted RBP3.56□□□□□ -1.84
VPS41-212ENST00000482217 TM9SF1O15321 606 aa3.56□□□□□ -1.84
VPS41-212ENST00000482217 RGS16O15492 202 aaPredicted RBP3.56□□□□□ -1.84
VPS41-212ENST00000482217 PSTPIP1O43586 416 aa3.56□□□□□ -1.84
VPS41-212ENST00000482217 ENSAO43768 121 aaKnown RBP3.56□□□□□ -1.84
VPS41-212ENST00000482217 KLRC4O43908 158 aa3.56□□□□□ -1.84
VPS41-212ENST00000482217 EIF4E2O60573 245 aaKnown RBP3.56□□□□□ -1.84
VPS41-212ENST00000482217 GJB5O95377 273 aa3.56□□□□□ -1.84
VPS41-212ENST00000482217 FGF19O95750 216 aa3.56□□□□□ -1.84
VPS41-212ENST00000482217 ORM1P02763 201 aa3.56□□□□□ -1.84
VPS41-212ENST00000482217 NGFRP08138 427 aa3.56□□□□□ -1.84
VPS41-212ENST00000482217 ZNF35P13682 527 aa3.56□□□□□ -1.84
VPS41-212ENST00000482217 KCNE1P15382 129 aa3.56□□□□□ -1.84
VPS41-212ENST00000482217 SSTR2P30874 369 aa3.56□□□□□ -1.84
VPS41-212ENST00000482217 MNDAP41218 407 aa3.56□□□□□ -1.84
VPS41-212ENST00000482217 MATKP42679 507 aa3.56□□□□□ -1.84
VPS41-212ENST00000482217 CX3CR1P49238 355 aa3.56□□□□□ -1.84
VPS41-212ENST00000482217 CDK9P50750 372 aaKnown RBP3.56□□□□□ -1.84
VPS41-212ENST00000482217 OR10A3P58181 314 aa3.56□□□□□ -1.84
VPS41-212ENST00000482217 TAS2R38P59533 333 aa3.56□□□□□ -1.84
VPS41-212ENST00000482217 ST3GAL3Q11203 375 aa3.56□□□□□ -1.84
VPS41-212ENST00000482217 SRSF6Q13247 344 aaKnown RBP3.56□□□□□ -1.84
VPS41-212ENST00000482217 ATXN7L3Q14CW9 347 aaPredicted RBP3.56□□□□□ -1.84
VPS41-212ENST00000482217 IRF4Q15306 451 aa3.56□□□□□ -1.84
VPS41-212ENST00000482217 SPIN3Q5JUX0 258 aa3.56□□□□□ -1.84
VPS41-212ENST00000482217 ACTL10Q5JWF8 245 aa3.56□□□□□ -1.84
VPS41-212ENST00000482217 ELFN2Q5R3F8 820 aa3.56□□□□□ -1.84
VPS41-212ENST00000482217 SDHAF4Q5VUM1 108 aa3.56□□□□□ -1.84
VPS41-212ENST00000482217 OR4C11Q6IEV9 310 aa3.56□□□□□ -1.84
VPS41-212ENST00000482217 OR4A47Q6IF82 309 aa3.56□□□□□ -1.84
VPS41-212ENST00000482217 ACSM5Q6NUN0 579 aa3.56□□□□□ -1.84
VPS41-212ENST00000482217 CWC27Q6UX04 472 aaKnown RBP3.56□□□□□ -1.84
VPS41-212ENST00000482217 ACOT7LQ6ZUV0 252 aa3.56□□□□□ -1.84
VPS41-212ENST00000482217 Q75L30 129 aa3.56□□□□□ -1.84
VPS41-212ENST00000482217 SHFQ7M4L6 423 aa3.56□□□□□ -1.84
VPS41-212ENST00000482217 NET1Q7Z628 596 aaPredicted RBP3.56□□□□□ -1.84
VPS41-212ENST00000482217 NT5DC3Q86UY8 548 aa3.56□□□□□ -1.84
VPS41-212ENST00000482217 DHFR2Q86XF0 187 aa3.56□□□□□ -1.84
VPS41-212ENST00000482217 PHF13Q86YI8 300 aaPredicted RBP3.56□□□□□ -1.84
VPS41-212ENST00000482217 TMEM139Q8IV31 216 aa3.56□□□□□ -1.84
VPS41-212ENST00000482217 FBXO16Q8IX29 292 aaPredicted RBP3.56□□□□□ -1.84
VPS41-212ENST00000482217 EID3Q8N140 333 aa3.56□□□□□ -1.84
VPS41-212ENST00000482217 SLC37A3Q8NCC5 494 aa3.56□□□□□ -1.84
VPS41-212ENST00000482217 LFNGQ8NES3 379 aa3.56□□□□□ -1.84
VPS41-212ENST00000482217 MRGPRDQ8TDS7 321 aa3.56□□□□□ -1.84
VPS41-212ENST00000482217 SMAP2Q8WU79 429 aaPredicted RBP3.56□□□□□ -1.84
VPS41-212ENST00000482217 OR8D1Q8WZ84 308 aa3.56□□□□□ -1.84
Retrieved 100 of 20,778 RNA–protein pairs in 34.4 ms