RNA–Protein interactions for RNA: ENST00000479532.1

SF3B1-209, Transcript of splicing factor 3b subunit 1, humanhuman

TSL 2

Gene SF3B1, Length 587 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B1-209ENST00000479532 USP22Q9UPT9 525 aa5.56□□□□□ -1.52
SF3B1-209ENST00000479532 RPH3AQ9Y2J0 694 aaPredicted RBP5.56□□□□□ -1.52
SF3B1-209ENST00000479532 PCDHGB1Q9Y5G3 927 aa5.56□□□□□ -1.52
SF3B1-209ENST00000479532 CNTRLQ7Z7A1 2325 aa5.56□□□□□ -1.52
SF3B1-209ENST00000479532 LOC400499M0QZD8 3231 aa5.55□□□□□ -1.52
SF3B1-209ENST00000479532 NCKAP5O14513 1909 aa5.55□□□□□ -1.52
SF3B1-209ENST00000479532 A0A1B0GTH9 108 aa5.55□□□□□ -1.52
SF3B1-209ENST00000479532 A0A1B0GVC2 190 aa5.55□□□□□ -1.52
SF3B1-209ENST00000479532 LINC00862A6NCI5 91 aa5.55□□□□□ -1.52
SF3B1-209ENST00000479532 OR6C65A6NJZ3 312 aa5.55□□□□□ -1.52
SF3B1-209ENST00000479532 CLDN24A6NM45 220 aa5.55□□□□□ -1.52
SF3B1-209ENST00000479532 ARPC2O15144 300 aa5.55□□□□□ -1.52
SF3B1-209ENST00000479532 FMO6PO60774 539 aa5.55□□□□□ -1.52
SF3B1-209ENST00000479532 UPK1BO75841 260 aa5.55□□□□□ -1.52
SF3B1-209ENST00000479532 SNAPC5O75971 98 aa5.55□□□□□ -1.52
SF3B1-209ENST00000479532 PRB1P04280 392 aa5.55□□□□□ -1.52
SF3B1-209ENST00000479532 IFNW1P05000 195 aa5.55□□□□□ -1.52
SF3B1-209ENST00000479532 TPOP07202 933 aa5.55□□□□□ -1.52
SF3B1-209ENST00000479532 GKN3PP0CG01 181 aa5.55□□□□□ -1.52
SF3B1-209ENST00000479532 PNMTP11086 282 aa5.55□□□□□ -1.52
SF3B1-209ENST00000479532 GABRA1P14867 456 aa5.55□□□□□ -1.52
SF3B1-209ENST00000479532 ITGA2P17301 1181 aa5.55□□□□□ -1.52
SF3B1-209ENST00000479532 HOXB6P17509 224 aaKnown RBP5.55□□□□□ -1.52
SF3B1-209ENST00000479532 CXCR1P25024 350 aa5.55□□□□□ -1.52
SF3B1-209ENST00000479532 PSMA4P25789 261 aaKnown RBP5.55□□□□□ -1.52
SF3B1-209ENST00000479532 MST1P26927 711 aa5.55□□□□□ -1.52
SF3B1-209ENST00000479532 SLC7A1P30825 629 aa5.55□□□□□ -1.52
SF3B1-209ENST00000479532 RCVRNP35243 200 aa5.55□□□□□ -1.52
SF3B1-209ENST00000479532 ETV6P41212 452 aa5.55□□□□□ -1.52
SF3B1-209ENST00000479532 APOBEC1P41238 236 aaKnown RBP5.55□□□□□ -1.52
SF3B1-209ENST00000479532 SLC1A3P43003 542 aa5.55□□□□□ -1.52
SF3B1-209ENST00000479532 TDGF1P3P51864 188 aa5.55□□□□□ -1.52
SF3B1-209ENST00000479532 POLR2HP52434 150 aaKnown RBP5.55□□□□□ -1.52
SF3B1-209ENST00000479532 ZNF45Q02386 682 aa5.55□□□□□ -1.52
SF3B1-209ENST00000479532 TLE1Q04724 770 aa5.55□□□□□ -1.52
SF3B1-209ENST00000479532 MERTKQ12866 999 aa5.55□□□□□ -1.52
SF3B1-209ENST00000479532 FOXF1Q12946 379 aa5.55□□□□□ -1.52
SF3B1-209ENST00000479532 CEACAM7Q14002 265 aa5.55□□□□□ -1.52
SF3B1-209ENST00000479532 DGUOKQ16854 277 aa5.55□□□□□ -1.52
SF3B1-209ENST00000479532 PRR30Q53SZ7 412 aaPredicted RBP5.55□□□□□ -1.52
SF3B1-209ENST00000479532 FGD3Q5JSP0 725 aa5.55□□□□□ -1.52
SF3B1-209ENST00000479532 RBM48Q5RL73 367 aaKnown RBP5.55□□□□□ -1.52
SF3B1-209ENST00000479532 CLVS2Q5SYC1 327 aa5.55□□□□□ -1.52
SF3B1-209ENST00000479532 FAM205BPQ63HN1 556 aa5.55□□□□□ -1.52
SF3B1-209ENST00000479532 ZNF324BQ6AW86 544 aaPredicted RBP5.55□□□□□ -1.52
SF3B1-209ENST00000479532 C3orf33Q6P1S2 294 aa5.55□□□□□ -1.52
SF3B1-209ENST00000479532 TTC33Q6PID6 262 aaPredicted RBP5.55□□□□□ -1.52
SF3B1-209ENST00000479532 CBLN3Q6UW01 205 aa5.55□□□□□ -1.52
SF3B1-209ENST00000479532 ARSKQ6UWY0 536 aa5.55□□□□□ -1.52
SF3B1-209ENST00000479532 ZNF600Q6ZNG1 722 aa5.55□□□□□ -1.52
SF3B1-209ENST00000479532 PLEKHM3Q6ZWE6 761 aa5.55□□□□□ -1.52
SF3B1-209ENST00000479532 SIAH3Q8IW03 269 aa5.55□□□□□ -1.52
SF3B1-209ENST00000479532 CDH26Q8IXH8 852 aa5.55□□□□□ -1.52
SF3B1-209ENST00000479532 ADGRG5Q8IZF4 528 aa5.55□□□□□ -1.52
SF3B1-209ENST00000479532 LINC00518Q8N0U6 118 aa5.55□□□□□ -1.52
SF3B1-209ENST00000479532 CLIP4Q8N3C7 705 aa5.55□□□□□ -1.52
SF3B1-209ENST00000479532 GTPBP8Q8N3Z3 284 aaPredicted RBP5.55□□□□□ -1.52
SF3B1-209ENST00000479532 LINC01356Q8N9X3 169 aa5.55□□□□□ -1.52
SF3B1-209ENST00000479532 OR6F1Q8NGZ6 308 aa5.55□□□□□ -1.52
SF3B1-209ENST00000479532 VANGL1Q8TAA9 524 aaPredicted RBP5.55□□□□□ -1.52
SF3B1-209ENST00000479532 SLC25A43Q8WUT9 341 aaPredicted RBP5.55□□□□□ -1.52
SF3B1-209ENST00000479532 DNAJA4Q8WW22 397 aaPredicted RBP5.55□□□□□ -1.52
SF3B1-209ENST00000479532 SMPDL3BQ92485 455 aa5.55□□□□□ -1.52
SF3B1-209ENST00000479532 DDIT4LQ96D03 193 aa5.55□□□□□ -1.52
SF3B1-209ENST00000479532 SLC47A1Q96FL8 570 aa5.55□□□□□ -1.52
SF3B1-209ENST00000479532 CLPTM1LQ96KA5 538 aa5.55□□□□□ -1.52
SF3B1-209ENST00000479532 MCHR1Q99705 422 aa5.55□□□□□ -1.52
SF3B1-209ENST00000479532 ARHGDIGQ99819 225 aa5.55□□□□□ -1.52
SF3B1-209ENST00000479532 APOL4Q9BPW4 351 aa5.55□□□□□ -1.52
SF3B1-209ENST00000479532 UGT2B28Q9BY64 529 aa5.55□□□□□ -1.52
SF3B1-209ENST00000479532 BARX1Q9HBU1 254 aaPredicted RBP5.55□□□□□ -1.52
SF3B1-209ENST00000479532 TIGARQ9NQ88 270 aa5.55□□□□□ -1.52
SF3B1-209ENST00000479532 ACOXLQ9NUZ1 547 aa5.55□□□□□ -1.52
SF3B1-209ENST00000479532 DCAF13Q9NV06 445 aaKnown RBP5.55□□□□□ -1.52
SF3B1-209ENST00000479532 RLIMQ9NVW2 624 aa5.55□□□□□ -1.52
SF3B1-209ENST00000479532 PAQR5Q9NXK6 330 aaPredicted RBP5.55□□□□□ -1.52
SF3B1-209ENST00000479532 ING3Q9NXR8 418 aa5.55□□□□□ -1.52
SF3B1-209ENST00000479532 EIF3KQ9UBQ5 218 aaKnown RBP5.55□□□□□ -1.52
SF3B1-209ENST00000479532 PACSIN3Q9UKS6 424 aa5.55□□□□□ -1.52
SF3B1-209ENST00000479532 CAMK2AQ9UQM7 478 aa5.55□□□□□ -1.52
SF3B1-209ENST00000479532 NTNG1Q9Y2I2 539 aa5.55□□□□□ -1.52
SF3B1-209ENST00000479532 MGAQ8IWI9 3026 aa5.55□□□□□ -1.52
SF3B1-209ENST00000479532 CACNA1GO43497 2377 aa5.54□□□□□ -1.52
SF3B1-209ENST00000479532 TMED7-TICAM2A0A0A6YYA0 188 aa5.54□□□□□ -1.52
SF3B1-209ENST00000479532 A0A0B4J203 849 aa5.54□□□□□ -1.52
SF3B1-209ENST00000479532 PNMA8CA0A1B0GUJ8 204 aa5.54□□□□□ -1.52
SF3B1-209ENST00000479532 OR2M5A3KFT3 312 aa5.54□□□□□ -1.52
SF3B1-209ENST00000479532 SH3D21A4FU49 640 aa5.54□□□□□ -1.52
SF3B1-209ENST00000479532 C17orf51A8MQB3 221 aa5.54□□□□□ -1.52
SF3B1-209ENST00000479532 NPIPA2E9PIF3 369 aa5.54□□□□□ -1.52
SF3B1-209ENST00000479532 NPIPA3F8WFD2 350 aa5.54□□□□□ -1.52
SF3B1-209ENST00000479532 hCG_2039718K7EN88 272 aa5.54□□□□□ -1.52
SF3B1-209ENST00000479532 M0R3H8 397 aa5.54□□□□□ -1.52
SF3B1-209ENST00000479532 ADAM10O14672 748 aa5.54□□□□□ -1.52
SF3B1-209ENST00000479532 SLC16A6O15403 523 aa5.54□□□□□ -1.52
SF3B1-209ENST00000479532 FRS3O43559 492 aa5.54□□□□□ -1.52
SF3B1-209ENST00000479532 GATCO43716 136 aaKnown RBP5.54□□□□□ -1.52
SF3B1-209ENST00000479532 ZIC3O60481 467 aa5.54□□□□□ -1.52
SF3B1-209ENST00000479532 TPST1O60507 370 aa5.54□□□□□ -1.52
SF3B1-209ENST00000479532 SLC19A2O60779 497 aa5.54□□□□□ -1.52
Retrieved 100 of 20,778 RNA–protein pairs in 32.2 ms